IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1183	 55.35	0	1255895..1256548	+	217	59801656	-	NGO1302	-	IS1016 transposase
1184	 58.50	0	1257496..1257789	-	97	59801657	-	NGO1304	-	ComE2
1185	 52.43	0	1263560..1263847	-	95	59801658	-	NGO1306	-	hypothetical protein
1186	 48.35	0	1263920..1265104	+	394	59801659	-	NGO1307	-	putative flavoprotein
1187	 51.32	0	1265171..1267327	-	718	59801660	-	NGO1308	-	putative guanosine-3',5'-bis(diphosphate)3'-pyrophosphohydrolase
1188	 51.69	0	1267420..1267626	-	68	59801661	-	NGO1309	-	hypothetical protein
1189	 54.05	0	1267684..1268301	-	205	59801662	-	NGO1310	-	KguA
1190	 54.67	0	1268429..1269028	+	199	59801663	-	NGO1311	-	adenine phosphoribosyltransferase
1191	 53.83	0	1269074..1269883	-	269	59801664	-	NGO1312	-	hypothetical protein
1192	 45.95	-1	1269916..1270026	+	36	59801665	-	NGO1313	-	hypothetical protein
1193	 54.13	0	1270187..1271542	+	451	59801666	-	NGO1314	-	putative protease
1194	 60.55	+1	1271673..1272146	+	157	59801667	-	NGO1315	-	hypothetical protein
1195	 55.96	0	1274941..1275594	+	217	59801668	-	NGO1317	-	IS1016 transposase
1196	 52.38	0	1275619..1276311	-	230	59801669	-	NGO1318	-	hypothetical protein
1197	 55.94	0	1276589..1277893	+	434	59801670	-	NGO1319	-	PqiA
1198	 52.95	0	1277886..1279547	+	553	59801671	-	NGO1320	-	PqiB
1199	 58.77	0	1279547..1280065	+	172	59801672	-	NGO1321	-	hypothetical protein
1200	 50.72	0	1280069..1280620	+	183	59801673	-	NGO1322	-	putative DNA-3-methyladenineglycosylase I
1201	 55.14	0	1280610..1281251	+	213	59801674	-	NGO1323	-	hypothetical protein
1202	 55.83	0	1281422..1281781	+	119	59801675	-	NGO1324	-	hypothetical protein
1203	 56.54	0	1281812..1284664	+	950	59801676	-	NGO1325	-	glycine dehydrogenase
1204	 32.61	-2	1285805..1285942	+	45	59801677	-	NGO1327	-	hypothetical protein
1205	 55.36	0	1286026..1286865	-	279	59801678	-	NGO1328	-	putative cytochrome
1206	 56.53	0	1287290..1288483	-	397	59801679	-	NGO1329	-	aromatic amino acid aminotransferase
1207	 52.25	0	1288503..1289591	-	362	59801680	-	NGO1330	-	tRNA (uracil-5-)-methyltransferase
1208	 59.85	+1	1289738..1290838	+	366	59801681	-	NGO1331	-	chorismate synthase
1209	 54.46	0	1290929..1291354	+	141	59801682	-	NGO1332	-	hypothetical protein
1210	 57.91	0	1291428..1293413	-	661	59801683	-	NGO1333	-	DNA topoisomerase IV subunit B
1211	 55.34	0	1293480..1294088	-	202	59801684	-	NGO1334	-	dinucleoside polyphosphate hydrolase
1212	 53.32	0	1294170..1295465	+	431	59801685	-	NGO1335	-	seryl-tRNA synthetase
1213	 53.45	0	1295538..1296536	-	332	59801686	-	NGO1336	-	D-lactate dehydrogenase
1214	 58.22	0	1296661..1297737	-	358	59801687	prfA	NGO1337	-	peptide chain release factor 1
1215	 57.07	0	1297827..1298597	-	256	59801688	-	NGO1338	-	hypothetical protein
1216	 60.32	+1	1298600..1299592	-	330	59801689	-	NGO1339	-	AnsA
1217	 55.26	0	1299659..1300342	-	227	59801690	-	NGO1340	-	hypothetical protein
1218	 58.22	0	1300531..1301868	-	445	59801691	-	NGO1341	-	MrsA
1219	 60.23	+1	1301995..1302849	-	284	59801692	-	NGO1342	-	DHPS
1220	 57.38	0	1302989..1303882	-	297	59801693	-	NGO1343	-	hypothetical protein
1221	 56.35	0	1303973..1306075	+	700	59801694	-	NGO1344	-	hypothetical protein
1222	 56.46	0	1306139..1307617	-	492	59801695	-	NGO1345	-	hypothetical protein
1223	 51.74	0	1307637..1308152	-	171	59801696	-	NGO1346	-	hypothetical protein
1224	 53.51	0	1308159..1308500	-	113	59801697	-	NGO1347	-	hypothetical protein
1225	 45.83	-1	1308544..1308711	-	55	59801698	-	NGO1348	-	hypothetical protein
1226	 59.47	+1	1308789..1309538	-	249	59801699	-	NGO1349	-	hypothetical protein
1227	 58.91	0	1309781..1310347	+	188	59801700	-	NGO1350	-	hypothetical protein
1228	 60.80	+1	1311101..1312243	+	380	59801701	-	NGO1352	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase
1229	 45.88	-1	1312530..1313294	+	254	59801702	-	NGO1353	-	hypothetical protein
1230	 48.36	0	1313295..1314359	+	354	59801703	-	NGO1354	-	RfaK
1231	 51.35	0	1314593..1315930	+	445	59801704	-	NGO1355	-	putative sodium dependent ion transport protein
1232	 53.58	0	1317126..1317920	-	264	59801705	thyA	NGO1357	-	thymidylate synthase
1233	 56.93	0	1318344..1319678	+	444	59801706	-	NGO1358	-	glutamate dehydrogenase
1234	 47.84	0	1319675..1319929	-	84	59801707	-	NGO1359	-	hypothetical protein
1235	 53.46	0	1319917..1320696	-	259	59801708	-	NGO1360	-	GntR family transcriptional regulator
1236	 52.78	0	1320974..1321261	+	95	59801709	-	NGO1361	-	hypothetical protein
1237	 51.33	0	1321289..1321438	+	49	59801710	-	NGO1362	-	hypothetical protein
1238	 56.20	0	1321639..1323042	-	467	59801711	-	NGO1363	-	hypothetical protein
1239	 54.09	0	1323095..1326298	-	1067	59801712	-	NGO1364	-	antibiotic resistance efflux pump component
1240	 58.43	0	1326310..1327548	-	412	59801713	-	NGO1365	-	antibiotic resistance efflux pump component
1241	 51.66	0	1327798..1328430	+	210	59801714	-	NGO1366	-	mtrCDE transcriptional regulator, repressor
1242	 28.68	-2	1328523..1328780	-	85	59801715	-	NGO1367	-	hypothetical protein
1243	 48.37	0	1329067..1330635	+	522	59801716	-	NGO1368	-	antibiotic resistance efflux pump component
1244	 56.28	0	1330703..1333909	-	1068	59801717	-	NGO1369	-	putative exodeoxyribonuclease V
1245	 53.55	0	1334010..1335419	-	469	59801718	-	NGO1370	-	hypothetical protein
1246	 50.61	0	1335763..1337082	-	439	59801719	-	NGO1371	-	CcoP
1247	 39.18	-2	1337106..1337276	-	56	59801720	-	NGO1372	-	hypothetical protein
1248	 52.29	0	1337281..1337892	-	203	59801721	-	NGO1373	-	CcoO
1249	 51.66	0	1337919..1339364	-	481	59801722	-	NGO1374	-	CcoN
1250	 51.29	0	1339678..1341426	+	582	59801723	-	NGO1375	-	hypothetical protein
1251	 55.98	0	1341452..1341919	+	155	59801724	-	NGO1376	-	hypothetical protein
1252	 51.72	0	1342420..1342854	-	144	59801725	-	NGO1377	-	hypothetical protein
1253	 54.43	0	1342857..1343567	-	236	59801726	-	NGO1378	-	ExbB
1254	 57.86	0	1343585..1344436	-	283	59801727	-	NGO1379	-	TonB
1255	 56.18	0	1344692..1345330	+	212	59801728	-	NGO1380	-	hypothetical protein
1256	 50.00	0	1345402..1346043	-	213	59801729	-	NGO1381	-	glutaredoxin 2
1257	 58.27	0	1346186..1348399	+	737	59801730	-	NGO1382	-	putative GTP pyrophosphokinase
1258	 36.51	-2	1348463..1348840	-	125	59801731	-	NGO1383	-	hypothetical protein
1259	 33.95	-2	1348909..1349394	-	161	59801732	-	NGO1384	-	hypothetical protein
1260	 44.44	-1	1349345..1349974	-	209	59801733	-	NGO1385	-	hypothetical protein
1261	 45.25	-1	1350801..1351505	-	234	59801734	-	NGO1386	-	hypothetical protein
1262	 35.17	-2	1351641..1352183	-	180	59801735	-	NGO1387	-	hypothetical protein
1263	 34.65	-2	1352310..1352537	-	75	59801736	-	NGO1388	-	hypothetical protein
1264	 32.10	-2	1352596..1352919	-	107	59801737	-	NGO1389	-	hypothetical protein
1265	 37.29	-2	1352909..1353262	-	117	59801738	-	NGO1390	-	hypothetical protein
1266	 38.62	-2	1353559..1354107	-	182	59801739	-	NGO1391	-	hypothetical protein
1267	 54.29	0	1354097..1355914	-	605	59801740	-	NGO1392	-	MafB3
1268	 59.98	+1	1355918..1356859	-	313	59801741	-	NGO1393	-	MafA2
1269	 55.81	0	1356999..1357652	-	217	59801742	-	NGO1394	-	IS1016 transposase
1270	 48.80	0	1357719..1358300	+	193	59801743	-	NGO1395	-	hypothetical protein
1271	 53.45	0	1358282..1360090	+	602	59801744	-	NGO1396	-	putative electron transfer flavoprotein-ubiquinone oxidoreductase
1272	 52.73	0	1360224..1360718	-	164	59801745	-	NGO1397	-	NosL
1273	 54.99	0	1360715..1361545	-	276	59801746	-	NGO1398	-	hypothetical protein
1274	 58.14	0	1361542..1362468	-	308	59801747	-	NGO1399	-	putative ABC transporter, ATP-binding protein
1275	 54.65	0	1368673..1369920	-	415	59801748	hemA	NGO1403	-	glutamyl-tRNA reductase
1276	 56.59	0	1370073..1370459	-	128	59801749	-	NGO1404	-	glycine cleavage system protein H
1277	 44.44	-1	1370511..1371050	-	179	59801750	-	NGO1405	-	hypothetical protein
1278	 55.59	0	1371197..1372297	-	366	59801751	gcvT	NGO1406	-	glycine cleavage system aminomethyltransferase T
1279	 51.55	0	1372809..1373291	+	160	59801752	-	NGO1407	-	AsnC family transcriptional regulator
1280	 50.50	0	1373338..1373943	+	201	59801753	-	NGO1408	-	hypothetical protein
1281	 56.39	0	1373940..1374299	+	119	59801754	-	NGO1410	-	hypothetical protein
1282	 54.62	0	1374586..1376079	+	497	59801755	-	NGO1411	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.