IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
62	 58.20	0	77089..78057	+	322	59800535	ispH	NGO0072	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
63	 62.88	+1	78813..79472	-	219	59800536	-	NGO0073	-	putative phosphatase
64	 55.14	0	80406..80726	+	106	59800537	-	NGO0076	-	hypothetical protein
65	 59.29	+1	80714..81337	+	207	59800538	-	NGO0077	-	hypothetical protein
66	 57.61	0	81989..85423	-	1144	59800539	-	NGO0078	-	putative DNA polymerase III, alpha subunit
67	 55.13	0	85956..86189	+	77	59800540	-	NGO0079	-	hypothetical protein
68	 60.29	+1	86167..86370	+	67	59800541	-	NGO0080	-	hypothetical protein
69	 59.74	+1	86665..87501	+	278	59800542	-	NGO0081	-	hypothetical protein
70	 57.85	0	87553..88845	-	430	59800543	avtA	NGO0082	-	valine--pyruvate transaminase
71	 57.56	0	88901..90811	-	636	59800544	-	NGO0083	-	pilin glycosylation protein
72	 58.08	0	90859..92034	-	391	59800545	-	NGO0084	-	PglC
73	 57.33	0	92165..93406	-	413	59800546	-	NGO0085	-	PglB
74	 53.21	0	93399..94565	-	388	59800547	-	NGO0086	-	hypothetical protein
75	 56.06	0	94579..95643	-	354	59800548	-	NGO0087	-	hypothetical protein
76	 60.69	+1	95640..97061	-	473	59800549	-	NGO0088	-	hypothetical protein
77	 59.37	+1	97256..98365	-	369	59800550	-	NGO0089	-	putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
78	 62.47	+1	98397..98849	-	150	59800551	-	NGO0090	-	transcriptional regulator NrdR
79	 58.84	0	98878..99720	-	280	59800552	-	NGO0091	-	hypothetical protein
80	 61.39	+1	100459..101538	-	359	59800553	-	NGO0092	-	3-dehydroquinate synthase
81	 57.31	0	101618..102130	-	170	59800554	-	NGO0093	-	shikimate kinase
82	 52.81	0	103398..105569	-	723	59800555	-	NGO0094	-	hypothetical protein
83	 49.63	0	105588..106133	-	181	59800556	-	NGO0095	-	PilP
84	 49.69	0	106151..106798	-	215	59800557	-	NGO0096	-	hypothetical protein
85	 49.50	0	106799..107398	-	199	59800558	-	NGO0097	-	PilN
86	 48.03	0	107401..108516	-	371	59800559	-	NGO0098	-	hypothetical protein
87	 51.06	0	108668..111064	+	798	59800560	-	NGO0099	-	PonA
88	 50.31	0	111184..111819	-	211	59800561	-	NGO0100	-	GTPase EngB
89	 50.80	0	112020..112643	+	207	59800562	-	NGO0101	-	putative cytochrome precursor
90	 50.10	0	112858..114873	+	671	59800563	-	NGO0102	-	putative cytochrome biogenesis protein
91	 52.86	0	114866..116053	+	395	59800564	-	NGO0103	-	putative cytochrome synthesis protein
92	 56.90	0	116169..117233	+	354	59800565	-	NGO0104	-	O-sialoglycoprotein endopeptidase
93	 56.26	0	117278..118171	-	297	59800566	-	NGO0105	-	lipid A biosynthesis lauroyl acyltransferase
94	 57.61	0	118517..119686	+	389	161572979	-	NGO0106	-	S-adenosylmethionine synthetase
95	 57.23	0	119751..121160	-	469	59800568	-	NGO0107	-	putative carboxypeptidase, penicillin binding protein
96	 49.79	0	121405..121890	+	161	59800569	-	NGO0108	-	hypothetical protein
97	 52.91	0	121880..122068	+	62	59800570	-	NGO0109	-	hypothetical protein
98	 53.04	0	122259..123572	+	437	59800571	-	NGO0110	-	putative magnesium citrate secondary transporter
99	 56.43	0	124550..125800	+	416	59800572	-	NGO0112	-	putative two-component system sensor kinase
100	 57.50	0	125835..127328	-	497	59800573	-	NGO0113	-	putative ribonuclease G / cytoplasmic axial filament protein
101	 58.91	0	127547..127804	+	85	59800574	-	NGO0114	-	putative glutaredoxin
102	 54.12	0	127801..128310	-	169	59800575	-	NGO0115	-	hypothetical protein
103	 54.95	0	127825..128268	+	147	59800576	-	NGO0116	-	preprotein translocase subunit SecB
104	 58.69	0	128354..130396	+	680	59800577	-	NGO0117	-	hypothetical protein
105	 62.84	+1	130990..132033	-	347	59800578	argC	NGO0118	-	N-acetyl-gamma-glutamyl-phosphate reductase
106	 54.08	0	132030..132323	-	97	59800579	-	NGO0119	-	hypothetical protein
107	 31.01	-2	132347..132475	+	42	59800580	-	NGO0120	-	hypothetical protein
108	 44.24	-1	132575..133729	+	384	59800581	-	NGO0121	-	hypothetical protein
109	 42.16	-1	133904..134311	+	135	59800582	-	NGO0122	-	hypothetical protein
110	 48.78	0	134372..135646	+	424	59800583	-	NGO0123	-	putative secretion protein
111	 59.20	0	135831..136178	+	115	59800584	-	NGO0124	-	hypothetical protein
112	 45.37	-1	136192..136407	+	71	59800585	-	NGO0125	-	hypothetical protein
113	 56.15	0	137771..138997	-	408	59800586	rbn	NGO0127	-	fused ribonuclease BN/uncharacterized domain-containing protein
114	 56.69	0	139096..139476	+	126	59800587	-	NGO0128	-	hypothetical protein
115	 57.33	0	139485..140159	+	224	59800588	-	NGO0129	-	YbaX
116	 57.95	0	140187..140702	+	171	59800589	-	NGO0130	-	hypothetical protein
117	 53.66	0	140790..141212	+	140	59800590	-	NGO0131	-	putative 6-pyruvoyl-tetrahydropterin synthase
118	 55.85	0	141478..142485	+	335	59800591	-	NGO0132	-	hypothetical protein
119	 52.45	0	142700..142903	+	67	59800592	-	NGO0133	-	hypothetical protein
120	 58.29	0	142978..144063	-	361	59800593	-	NGO0135	-	beta-hexosaminidase
121	 56.41	0	144120..145640	-	506	59800594	-	NGO0136	-	hypothetical protein
122	 36.00	-2	145668..145817	+	49	59800595	-	NGO0137	-	hypothetical protein
123	 56.67	0	145843..147342	-	499	59800596	-	NGO0138	-	putative serine protease
124	 53.33	0	147480..148109	-	209	59800597	-	NGO0139	-	putative endonuclease III
125	 57.91	0	148156..148692	-	178	59800598	-	NGO0140	-	hypothetical protein
126	 39.46	-2	148719..148865	+	48	59800599	-	NGO0141	-	hypothetical protein
127	 52.69	0	148948..150228	+	426	59800600	-	NGO0142	-	putative sugar transporter
128	 54.78	0	150518..151897	+	459	59800601	-	NGO0143	-	hypothetical protein
129	 55.27	0	152040..152864	-	274	59800602	-	NGO0144	-	hypothetical protein
130	 51.26	0	152866..153501	-	211	59800603	-	NGO0145	-	hypothetical protein
131	 56.52	0	153500..154435	+	311	59800604	hemC	NGO0146	-	porphobilinogen deaminase
132	 56.08	0	156345..157430	-	361	59800605	-	NGO0147	-	hypothetical protein
133	 58.80	0	157367..157582	-	71	59800606	-	NGO0148	-	hypothetical protein
134	 58.30	0	157762..159135	-	457	59800607	-	NGO0149	-	putative ATP-dependent RNA helicase
135	 54.50	0	159159..159347	-	62	59800608	-	NGO0150	-	hypothetical protein
136	 60.90	+1	159349..160353	+	334	59800609	-	NGO0151	-	hypothetical protein
137	 50.61	0	160452..160781	+	109	59800610	-	NGO0152	-	hypothetical protein
138	 60.89	+1	160784..161320	+	178	161572978	ruvC	NGO0153	-	Holliday junction resolvase
139	 50.80	0	161371..162240	+	289	59800612	-	NGO0154	-	lipid A biosynthesis lauroyl acyltransferase
140	 54.07	0	162894..163028	+	44	59800613	-	NGO0155	-	hypothetical protein
141	 54.59	0	163144..163938	+	264	59800614	-	NGO0156	-	hypothetical protein
142	 57.45	0	164163..166766	+	867	59800615	-	NGO0158	-	putative aminopeptidase N
143	 41.67	-1	167614..167805	-	63	59800616	-	NGO0160	-	hypothetical protein
144	 25.21	-2	167838..168305	-	155	59800617	-	NGO0161	-	hypothetical protein
145	 40.42	-1	168362..168742	-	126	59800618	-	NGO0162	-	hypothetical protein
146	 30.42	-2	168745..169122	-	125	59800619	-	NGO0163	-	hypothetical protein
147	 36.07	-2	169180..169545	-	121	59800620	-	NGO0164	-	hypothetical protein
148	 47.59	0	169527..170066	-	179	59800621	-	NGO0165	-	hypothetical protein
149	 51.79	0	170109..170975	-	288	59800622	-	NGO0166	-	hypothetical protein
150	 31.48	-2	171011..171226	+	71	59800623	-	NGO0167	-	hypothetical protein
151	 54.48	0	171195..172121	-	308	59800624	-	NGO0168	-	MntC
152	 58.09	0	172198..173025	-	275	59800625	-	NGO0169	-	putative ABC transporter, membrane protein
153	 52.91	0	173108..173863	-	251	59800626	-	NGO0170	-	putative ABC transporter, ATP-binding protein
154	 54.10	0	174154..174519	-	121	59800627	rplS	NGO0171	-	50S ribosomal protein L19
155	 52.53	0	174534..175283	-	249	59800628	-	NGO0172	-	putative tRNA (guanine-N1)-methyltransferase
156	 51.18	0	175283..175792	-	169	59800629	rimM	NGO0173	-	16S rRNA-processing protein
157	 55.69	0	175808..176053	-	81	59800630	rpsP	NGO0174	-	30S ribosomal protein S16
158	 52.67	0	178639..180045	-	468	59800631	-	NGO0176	-	putative two-component system sensor kinase
159	 56.49	0	180058..180735	-	225	59800632	-	NGO0177	-	putative two-component system transcriptional response regulator
160	 56.09	0	180925..182739	-	604	59800633	-	NGO0178	-	hypothetical protein
161	 49.72	0	182729..183082	-	117	59800634	-	NGO0179	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.