IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1046	 52.79	0	1091449..1092255	+	268	59801519	-	NGO1152	-	ABC transporter, periplasmic histidine-binding protein precursor
1047	 58.88	0	1094183..1095595	+	470	59801520	trkA	NGO1154	-	potassium transporter peripheral membrane component
1048	 58.61	0	1096079..1096537	-	152	59801521	-	NGO1155	-	hypothetical protein
1049	 52.87	0	1096627..1097481	-	284	59801522	-	NGO1156	-	hypothetical protein
1050	 55.66	0	1097814..1098467	+	217	59801523	-	NGO1157	-	IS1016 transposase
1051	 47.04	0	1098435..1099703	-	422	59801524	-	NGO1158	-	hypothetical protein
1052	 54.25	0	1100191..1100343	-	50	59801525	-	NGO1159	-	hypothetical protein
1053	 57.50	0	1100403..1101209	+	268	59801526	-	NGO1160	-	phosphomethylpyrimidine kinase
1054	 55.40	0	1101267..1102136	-	289	59801527	-	NGO1161	-	tellurite resistance protein TehB
1055	 57.99	0	1102249..1102686	+	145	59801528	-	NGO1162	-	ribonuclease H
1056	 50.94	0	1102723..1102881	+	52	59801529	-	NGO1163	-	hypothetical protein
1057	 46.52	0	1103017..1103979	-	320	59801530	-	NGO1164	-	Irg3
1058	 49.45	0	1104972..1106057	-	361	59801531	-	NGO1165	-	putative phage associated protein
1059	 46.46	0	1106062..1106358	-	98	59801532	-	NGO1166	-	putative phage associated protein
1060	 49.40	0	1106359..1107939	-	526	59801533	-	NGO1167	-	TspB2
1061	 49.12	0	1108606..1108890	-	94	59801534	-	NGO1168	-	putative phage associated protein
1062	 42.93	-1	1108898..1109095	-	65	59801535	-	NGO1169	-	putative phage associated protein
1063	 46.96	0	1109100..1109444	-	114	59801536	-	NGO1170	-	putative phage associated protein
1064	 38.06	-2	1110897..1111319	-	140	59801537	-	NGO1173	-	putative DNA mismatch endonuclease, patch repair protein
1065	 48.30	0	1114327..1114473	+	48	59801538	-	NGO1176	-	hypothetical protein
1066	 37.56	-2	1114850..1115299	-	149	59801539	-	NGO1177	-	hypothetical protein
1067	 58.67	0	1115387..1115686	-	99	59801540	-	NGO1178	-	ComE1
1068	 43.38	-1	1121383..1121601	+	72	59801541	-	NGO1179	-	hypothetical protein
1069	 57.52	0	1123800..1124138	-	112	59801542	-	NGO1182	-	putative nitrogen regulatory protein P-II
1070	 56.61	0	1124290..1128246	+	1318	59801543	-	NGO1183	-	phosphoribosylformylglycinamidine synthase
1071	 51.56	0	1128345..1129463	-	372	59801544	-	NGO1184	-	hypothetical protein
1072	 50.00	0	1129602..1129913	-	103	59801545	-	NGO1185	-	ArsR family transcriptional regulator
1073	 41.03	-1	1129938..1130132	-	64	59801546	-	NGO1186	-	hypothetical protein
1074	 60.29	+1	1130145..1130897	+	250	59801547	-	NGO1187	-	hypothetical protein
1075	 57.87	0	1131131..1132585	+	484	59801548	-	NGO1188	-	MgtE
1076	 58.42	0	1132671..1133579	-	302	59801549	hslO	NGO1189	-	Hsp33-like chaperonin
1077	 61.30	+1	1133860..1134492	+	210	59801550	-	NGO1190	-	GNA2001
1078	 52.51	0	1134511..1134729	+	72	59801551	-	NGO1191	-	hypothetical protein
1079	 58.26	0	1134874..1135218	+	114	59801552	-	NGO1192	-	hypothetical protein
1080	 59.31	+1	1135218..1135910	+	230	59801553	-	NGO1193	-	hypothetical protein
1081	 61.18	+1	1135977..1137197	+	406	59801554	argJ	NGO1194	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1082	 61.42	+1	1137257..1138666	+	469	59801555	-	NGO1195	-	hypothetical protein
1083	 56.47	0	1138854..1140245	+	463	59801556	-	NGO1196	-	putative ATP-dependent DNA helicase related protein
1084	 29.88	-2	1140196..1141815	+	539	59801557	-	NGO1197	-	hypothetical protein
1085	 49.46	0	1142045..1143619	+	524	59801558	-	NGO1198	-	hypothetical protein
1086	 56.58	0	1143685..1146915	+	1076	59801559	-	NGO1199	-	HrpA
1087	 46.63	0	1147035..1147997	-	320	59801560	-	NGO1200	-	Irg4
1088	 36.04	-2	1148343..1148453	-	36	59801561	-	NGO1201	-	hypothetical protein
1089	 53.45	0	1149327..1150355	-	342	59801562	-	NGO1203	-	anthranilate phosphoribosyltransferase
1090	 51.95	0	1150419..1151009	-	196	59801563	-	NGO1204	-	anthranilate synthase component II
1091	 55.73	0	1151402..1153696	+	764	59801564	-	NGO1205	-	putative TonB-dependent receptor protein
1092	 52.82	0	1154088..1154867	-	259	59801565	-	NGO1206	-	phosphatidylserine decarboxylase
1093	 56.98	0	1155021..1157870	+	949	59801566	uvrA	NGO1207	-	excinuclease ABC subunit A
1094	 43.30	-1	1157888..1158529	+	213	59801567	-	NGO1208	-	NgoMIIIM
1095	 41.71	-1	1158533..1159666	+	377	59801568	-	NGO1209	-	DNA cytosine methyltransferase M.NgoMIII
1096	 48.84	0	1159776..1160162	+	128	59801569	-	NGO1210	-	hypothetical protein
1097	 55.05	0	1160159..1160812	-	217	59801570	-	NGO1211	-	IS1016 transposase
1098	 55.66	0	1160954..1162588	-	544	59801571	-	NGO1212	-	CTP synthetase
1099	 52.90	0	1162700..1164370	-	556	59801572	-	NGO1213	-	putative long-chain-fatty-acid--CoA-ligase
1100	 52.95	0	1164441..1165592	-	383	59801573	trmU	NGO1214	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1101	 54.22	0	1165669..1166142	-	157	59801574	-	NGO1215	-	hypothetical protein
1102	 56.51	0	1166274..1166657	-	127	59801575	-	NGO1216	-	diacylglycerol kinase
1103	 54.17	0	1166816..1167775	-	319	59801576	-	NGO1217	-	glutathione synthetase
1104	 54.36	0	1167864..1169585	-	573	59801577	-	NGO1218	-	glutaminyl-tRNA synthetase
1105	 57.49	0	1169664..1170437	-	257	59801578	-	NGO1219	-	DeoR family transcriptional regulator
1106	 56.81	0	1170480..1171382	-	300	59801579	-	NGO1220	-	hypothetical protein
1107	 56.76	0	1171531..1172247	-	238	59801580	-	NGO1221	-	GntR family transcriptional regulator
1108	 55.27	0	1172769..1173119	-	116	59801581	-	NGO1222	-	hypothetical protein
1109	 53.72	0	1173309..1173980	-	223	59801582	-	NGO1223	-	hypothetical protein
1110	 55.50	0	1173996..1174622	-	208	59801583	-	NGO1224	-	putative phosphoribosylglycinamidetransformylase
1111	 54.33	0	1174729..1175547	-	272	59801584	-	NGO1225	-	putative peptidyl-prolylisomerase
1112	 55.78	0	1175807..1176247	-	146	59801585	-	NGO1226	-	HolC
1113	 56.29	0	1176310..1177716	-	468	59801586	-	NGO1227	-	AmpA
1114	 54.12	0	1177890..1179005	+	371	59801587	-	NGO1228	-	hypothetical protein
1115	 55.74	0	1179002..1180072	+	356	59801588	-	NGO1229	-	hypothetical protein
1116	 49.38	0	1180077..1180238	+	53	59801589	-	NGO1230	-	hypothetical protein
1117	 55.72	0	1180387..1182972	+	861	59801590	-	NGO1231	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1118	 54.32	0	1183114..1184109	+	331	59801591	-	NGO1232	-	ornithine carbamoyltransferase
1119	 52.37	0	1184228..1185241	-	337	59801592	-	NGO1233	-	ketol-acid reductoisomerase
1120	 46.94	0	1185321..1185614	-	97	59801593	-	NGO1234	-	hypothetical protein
1121	 49.59	0	1185681..1186172	-	163	59801594	-	NGO1235	-	acetolactate synthase 3 regulatory subunit
1122	 52.03	0	1186183..1187910	-	575	59801595	-	NGO1236	-	IlvI
1123	 54.59	0	1188975..1189628	+	217	59801596	-	NGO1237	-	hypothetical protein
1124	 54.95	0	1189707..1190372	+	221	59801597	hisG	NGO1238	-	ATP phosphoribosyltransferase catalytic subunit
1125	 45.16	-1	1190464..1191351	+	295	59801598	-	NGO1239	-	hypothetical protein
1126	 58.22	0	1191348..1192637	+	429	59801599	hisD	NGO1240	-	histidinol dehydrogenase
1127	 57.13	0	1192683..1193762	+	359	59801600	-	NGO1241	-	histidinol-phosphate aminotransferase
1128	 57.69	0	1193956..1194690	+	244	59801601	hisB	NGO1242	-	imidazoleglycerol-phosphate dehydratase
1129	 56.67	0	1194766..1195635	+	289	59801602	-	NGO1243	-	hypothetical protein
1130	 49.31	0	1195870..1196301	+	143	59801603	-	NGO1244	-	MarR family transcriptional regulator
1131	 53.75	0	1196312..1197178	+	288	59801604	-	NGO1245	-	hypothetical protein
1132	 48.24	0	1197229..1198281	-	350	59801605	-	NGO1246	-	putative periplasmic protease
1133	 49.29	0	1199032..1199595	-	187	59801606	-	NGO1247	-	hypothetical protein
1134	 49.88	0	1199701..1200123	-	140	59801607	-	NGO1248	-	hypothetical protein
1135	 56.25	0	1200302..1200637	-	111	59801608	-	NGO1249	-	hypothetical protein
1136	 53.14	0	1200818..1201660	+	280	59801609	-	NGO1250	-	mtrCDE transcriptional regulator, activator
1137	 48.01	0	1201722..1202300	-	192	59801610	-	NGO1251	-	hypothetical protein
1138	 56.70	0	1202358..1203260	+	300	59801611	-	NGO1252	-	hypothetical protein
1139	 50.93	0	1203301..1204431	-	376	59801612	-	NGO1253	-	putative ABC transporter, periplasmic binding protein, polyamine
1140	 55.31	0	1204635..1207259	+	874	59801613	-	NGO1254	-	hypothetical protein
1141	 35.38	-2	1207321..1207662	+	113	59801614	-	NGO1255	-	hypothetical protein
1142	 54.74	0	1208062..1208715	+	217	59801615	-	NGO1256	-	IS1016 transposase
1143	 45.83	-1	1209532..1209675	-	47	59801616	-	NGO1257	-	hypothetical protein
1144	 54.97	0	1209692..1210375	-	227	59801617	-	NGO1258	-	phosphoglyceromutase
1145	 56.47	0	1210524..1212827	+	767	59801618	-	NGO1259	-	DNA topoisomerase IV subunit A
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.