IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1001	 57.45	0	1065246..1065614	+	122	59801474	-	NGO1107	-	putative phage associated protein
1002	 59.39	+1	1065652..1066146	-	164	59801475	-	NGO1108	-	putative phage associated protein
1003	 58.95	0	1066185..1066469	-	94	59801476	-	NGO1109	-	putative phage associated protein
1004	 54.48	0	1066486..1067847	-	453	59801477	-	NGO1110	-	putative replicative DNA helicase, putative phage associated protein
1005	 52.08	0	1067844..1068974	-	376	59801478	-	NGO1111	-	putative phage associated protein
1006	 46.05	-1	1069092..1069319	-	75	59801479	-	NGO1112	-	putative phage associated protein
1007	 49.21	0	1069492..1069680	+	62	59801480	-	NGO1113	-	putative phage associated protein
1008	 49.36	0	1069657..1069812	-	51	59801481	-	NGO1114	-	putative phage associated protein
1009	 38.10	-2	1069893..1070081	-	62	59801482	-	NGO1115	-	putative phage associated protein
1010	 55.71	0	1070260..1070907	+	215	59801483	-	NGO1116	-	putative phage repressor protein, putative phage associated protein
1011	 52.04	0	1071067..1071606	+	179	59801484	-	NGO1117	-	putative phage associated protein
1012	 48.61	0	1071607..1071966	+	119	59801485	-	NGO1118	-	putative phage associated protein
1013	 58.45	0	1071983..1072201	-	72	59801486	-	NGO1119	-	putative phage associated protein
1014	 42.79	-1	1072684..1072884	+	66	59801487	-	NGO1120	-	putative phage associated protein
1015	 50.94	0	1072917..1073393	+	158	59801488	-	NGO1121	-	putative phage associated protein
1016	 65.22	+1	1073390..1073665	+	91	59801489	-	NGO1122	-	putative phage associated protein
1017	 55.86	0	1073806..1074138	+	110	59801490	-	NGO1123	-	putative phage associated protein
1018	 59.77	+1	1074307..1074567	+	86	59801491	-	NGO1124	-	putative phage associated protein
1019	 51.85	0	1074564..1074725	+	53	59801492	-	NGO1125	-	putative phage associated protein
1020	 55.60	0	1074794..1075480	+	228	59801493	-	NGO1126	-	putative phage associated protein
1021	 56.28	0	1075620..1075802	+	60	59801494	-	NGO1127	-	putative phage associated protein
1022	 52.44	0	1075799..1076290	+	163	59801495	-	NGO1128	-	putative phage associated protein
1023	 32.87	-2	1076342..1076557	+	71	59801496	-	NGO1129	-	putative phage associated protein
1024	 57.62	0	1076668..1077651	+	327	59801497	-	NGO1130	-	putative phage associated protein
1025	 60.39	+1	1077648..1078061	+	137	59801498	-	NGO1131	-	putative phage associated protein
1026	 46.67	0	1078087..1078281	+	64	59801499	-	NGO1132	-	putative phage associated protein
1027	 54.22	0	1078572..1079246	+	224	59801500	-	NGO1133	-	hypothetical protein
1028	 54.21	0	1079239..1079832	+	197	59801501	-	NGO1134	-	putative GTP cyclohydrolase II
1029	 45.51	-1	1079913..1080224	-	103	59801502	-	NGO1135	-	hypothetical protein
1030	 44.76	-1	1079991..1080200	+	69	59801503	-	NGO1136	-	hypothetical protein
1031	 46.42	0	1080185..1081147	+	320	59801504	-	NGO1137	-	Irg2
1032	 49.45	0	1082262..1083347	-	361	59801505	-	NGO1138	-	putative phage associated protein
1033	 46.46	0	1083352..1083648	-	98	59801506	-	NGO1139	-	putative phage associated protein
1034	 50.20	0	1083649..1085172	-	507	59801507	-	NGO1140	-	TspB1
1035	 34.53	-2	1085156..1085488	-	110	59801508	-	NGO1141	-	putative phage associated protein
1036	 47.31	0	1085601..1085879	-	92	59801509	-	NGO1142	-	putative phage associated protein
1037	 51.14	0	1085886..1086104	-	72	59801510	-	NGO1143	-	putative phage associated protein
1038	 38.73	-2	1086190..1086393	-	67	59801511	-	NGO1144	-	putative phage associated protein
1039	 44.55	-1	1086407..1086718	-	103	59801512	-	NGO1145	-	putative phage associated protein
1040	 45.44	-1	1086789..1088060	-	423	59801513	-	NGO1146	-	putative phage associated protein
1041	 37.78	-2	1088047..1088271	-	74	59801514	-	NGO1147	-	hypothetical protein
1042	 42.03	-1	1088667..1088873	-	68	59801515	-	NGO1148	-	hypothetical protein
1043	 57.80	0	1088968..1090128	-	386	59801516	-	NGO1149	-	putative O-succinylhomoserine sulfhydrolase
1044	 54.35	0	1090274..1091044	-	256	59801517	-	NGO1150	-	hypothetical protein
1045	 52.38	0	1091146..1091397	+	83	59801518	-	NGO1151	-	hypothetical protein
1046	 52.79	0	1091449..1092255	+	268	59801519	-	NGO1152	-	ABC transporter, periplasmic histidine-binding protein precursor
1047	 58.88	0	1094183..1095595	+	470	59801520	trkA	NGO1154	-	potassium transporter peripheral membrane component
1048	 58.61	0	1096079..1096537	-	152	59801521	-	NGO1155	-	hypothetical protein
1049	 52.87	0	1096627..1097481	-	284	59801522	-	NGO1156	-	hypothetical protein
1050	 55.66	0	1097814..1098467	+	217	59801523	-	NGO1157	-	IS1016 transposase
1051	 47.04	0	1098435..1099703	-	422	59801524	-	NGO1158	-	hypothetical protein
1052	 54.25	0	1100191..1100343	-	50	59801525	-	NGO1159	-	hypothetical protein
1053	 57.50	0	1100403..1101209	+	268	59801526	-	NGO1160	-	phosphomethylpyrimidine kinase
1054	 55.40	0	1101267..1102136	-	289	59801527	-	NGO1161	-	tellurite resistance protein TehB
1055	 57.99	0	1102249..1102686	+	145	59801528	-	NGO1162	-	ribonuclease H
1056	 50.94	0	1102723..1102881	+	52	59801529	-	NGO1163	-	hypothetical protein
1057	 46.52	0	1103017..1103979	-	320	59801530	-	NGO1164	-	Irg3
1058	 49.45	0	1104972..1106057	-	361	59801531	-	NGO1165	-	putative phage associated protein
1059	 46.46	0	1106062..1106358	-	98	59801532	-	NGO1166	-	putative phage associated protein
1060	 49.40	0	1106359..1107939	-	526	59801533	-	NGO1167	-	TspB2
1061	 49.12	0	1108606..1108890	-	94	59801534	-	NGO1168	-	putative phage associated protein
1062	 42.93	-1	1108898..1109095	-	65	59801535	-	NGO1169	-	putative phage associated protein
1063	 46.96	0	1109100..1109444	-	114	59801536	-	NGO1170	-	putative phage associated protein
1064	 38.06	-2	1110897..1111319	-	140	59801537	-	NGO1173	-	putative DNA mismatch endonuclease, patch repair protein
1065	 48.30	0	1114327..1114473	+	48	59801538	-	NGO1176	-	hypothetical protein
1066	 37.56	-2	1114850..1115299	-	149	59801539	-	NGO1177	-	hypothetical protein
1067	 58.67	0	1115387..1115686	-	99	59801540	-	NGO1178	-	ComE1
1068	 43.38	-1	1121383..1121601	+	72	59801541	-	NGO1179	-	hypothetical protein
1069	 57.52	0	1123800..1124138	-	112	59801542	-	NGO1182	-	putative nitrogen regulatory protein P-II
1070	 56.61	0	1124290..1128246	+	1318	59801543	-	NGO1183	-	phosphoribosylformylglycinamidine synthase
1071	 51.56	0	1128345..1129463	-	372	59801544	-	NGO1184	-	hypothetical protein
1072	 50.00	0	1129602..1129913	-	103	59801545	-	NGO1185	-	ArsR family transcriptional regulator
1073	 41.03	-1	1129938..1130132	-	64	59801546	-	NGO1186	-	hypothetical protein
1074	 60.29	+1	1130145..1130897	+	250	59801547	-	NGO1187	-	hypothetical protein
1075	 57.87	0	1131131..1132585	+	484	59801548	-	NGO1188	-	MgtE
1076	 58.42	0	1132671..1133579	-	302	59801549	hslO	NGO1189	-	Hsp33-like chaperonin
1077	 61.30	+1	1133860..1134492	+	210	59801550	-	NGO1190	-	GNA2001
1078	 52.51	0	1134511..1134729	+	72	59801551	-	NGO1191	-	hypothetical protein
1079	 58.26	0	1134874..1135218	+	114	59801552	-	NGO1192	-	hypothetical protein
1080	 59.31	+1	1135218..1135910	+	230	59801553	-	NGO1193	-	hypothetical protein
1081	 61.18	+1	1135977..1137197	+	406	59801554	argJ	NGO1194	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1082	 61.42	+1	1137257..1138666	+	469	59801555	-	NGO1195	-	hypothetical protein
1083	 56.47	0	1138854..1140245	+	463	59801556	-	NGO1196	-	putative ATP-dependent DNA helicase related protein
1084	 29.88	-2	1140196..1141815	+	539	59801557	-	NGO1197	-	hypothetical protein
1085	 49.46	0	1142045..1143619	+	524	59801558	-	NGO1198	-	hypothetical protein
1086	 56.58	0	1143685..1146915	+	1076	59801559	-	NGO1199	-	HrpA
1087	 46.63	0	1147035..1147997	-	320	59801560	-	NGO1200	-	Irg4
1088	 36.04	-2	1148343..1148453	-	36	59801561	-	NGO1201	-	hypothetical protein
1089	 53.45	0	1149327..1150355	-	342	59801562	-	NGO1203	-	anthranilate phosphoribosyltransferase
1090	 51.95	0	1150419..1151009	-	196	59801563	-	NGO1204	-	anthranilate synthase component II
1091	 55.73	0	1151402..1153696	+	764	59801564	-	NGO1205	-	putative TonB-dependent receptor protein
1092	 52.82	0	1154088..1154867	-	259	59801565	-	NGO1206	-	phosphatidylserine decarboxylase
1093	 56.98	0	1155021..1157870	+	949	59801566	uvrA	NGO1207	-	excinuclease ABC subunit A
1094	 43.30	-1	1157888..1158529	+	213	59801567	-	NGO1208	-	NgoMIIIM
1095	 41.71	-1	1158533..1159666	+	377	59801568	-	NGO1209	-	DNA cytosine methyltransferase M.NgoMIII
1096	 48.84	0	1159776..1160162	+	128	59801569	-	NGO1210	-	hypothetical protein
1097	 55.05	0	1160159..1160812	-	217	59801570	-	NGO1211	-	IS1016 transposase
1098	 55.66	0	1160954..1162588	-	544	59801571	-	NGO1212	-	CTP synthetase
1099	 52.90	0	1162700..1164370	-	556	59801572	-	NGO1213	-	putative long-chain-fatty-acid--CoA-ligase
1100	 52.95	0	1164441..1165592	-	383	59801573	trmU	NGO1214	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.