IslandPath Analysis: Nanoarchaeum equitans Kin4-M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.10   STD DEV: 2.97
Nanoarchaeum equitans Kin4-M, complete genome - 1..490885
536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
7	 30.92	0	5759..7000	+	413	41614804	-	NEQ008	-	hypothetical protein
8	 27.27	-1	7105..7401	-	98	41614805	-	NEQ009	-	hypothetical protein
9	 27.97	-1	7398..8423	-	341	41614806	-	NEQ010	-	hypothetical protein
10	 35.15	+1	8399..8728	-	109	41614807	-	NEQ011	-	hypothetical protein
11	 30.36	0	8775..9815	+	346	41614808	-	NEQ012	-	hypothetical protein
12	 30.55	0	9793..10833	+	346	41614809	-	NEQ013	-	hypothetical protein
13	 29.32	0	11037..11984	-	315	41614810	-	NEQ014	-	hypothetical protein
14	 29.75	0	12031..13089	+	352	41614811	-	NEQ015	-	hypothetical protein
15	 29.35	0	14872..15147	-	91	41614812	-	NEQ016	-	hypothetical protein
16	 27.05	-1	15157..16158	+	333	41614813	-	NEQ017	-	hypothetical protein
17	 30.20	0	16354..17631	+	425	41614814	-	NEQ018	-	hypothetical protein
18	 32.71	0	17628..18596	+	322	41614815	-	NEQ019	-	hypothetical protein
19	 30.64	0	18593..19297	+	234	41614816	-	NEQ020	-	hypothetical protein
20	 28.40	0	19294..21561	+	755	41614817	-	NEQ022	-	hypothetical protein
21	 28.01	-1	21555..22061	-	168	41614818	-	NEQ021	-	hypothetical protein
22	 29.19	0	22304..23197	+	297	41614819	-	NEQ023	-	hypothetical protein
23	 32.79	0	23219..24316	+	365	41614820	-	NEQ024	-	hypothetical protein
24	 29.84	0	24345..25118	+	257	41614821	-	NEQ025	-	hypothetical protein
25	 34.30	+1	25199..25507	+	102	41614822	-	NEQ026	-	hypothetical protein
26	 26.98	-1	25482..26426	+	314	41614823	-	NEQ028	-	hypothetical protein
27	 32.42	0	26403..27497	-	364	41614824	-	NEQ027	-	hypothetical protein
28	 28.68	0	27544..28059	-	171	41614825	-	NEQ029	-	hypothetical protein
29	 29.56	0	28056..28691	-	211	41614826	-	NEQ030	-	hypothetical protein
30	 31.38	0	28722..29234	-	170	41614827	-	NEQ031	-	putative RNA-processing protein
31	 32.20	0	29432..30583	+	383	41614828	-	NEQ032	-	hypothetical protein
32	 30.65	0	30576..32363	+	595	41614829	-	NEQ033	-	hypothetical protein
33	 28.62	0	32363..32998	+	211	41614830	-	NEQ034	-	hypothetical protein
34	 31.48	0	33020..34420	+	466	41614831	-	NEQ035	-	hypothetical protein
35	 28.42	0	34449..34733	+	94	41614832	-	NEQ036	-	hypothetical protein
36	 36.02	+1	34755..35015	+	86	41614833	rpl37ae	NEQ038	-	50S ribosomal protein L37Ae
37	 30.85	0	34999..35199	-	66	41614834	-	NEQ037	-	hypothetical protein
38	 34.25	+1	35478..36131	+	217	41614835	-	NEQ039	-	transcription factor
39	 29.01	0	36124..36771	+	215	41614836	-	NEQ041	-	hypothetical protein
40	 29.83	0	36739..37566	-	275	41614837	-	NEQ040	-	hypothetical protein
41	 30.85	0	37563..39014	-	483	41614838	-	NEQ042	-	hypothetical protein
42	 34.90	+1	39040..39294	-	84	41614839	-	NEQ043	-	hypothetical protein
43	 28.79	0	39323..39916	-	197	41614840	-	NEQ044	-	hypothetical protein
44	 30.81	0	39873..41099	-	408	41614841	-	NEQ045	-	hypothetical protein
45	 29.07	0	41032..41406	-	124	41614842	-	NEQ046	-	hypothetical protein
46	 29.90	0	41393..42061	+	222	41614843	-	NEQ047	-	hypothetical protein
47	 28.32	0	42006..42803	+	265	41614844	-	NEQ048	-	hypothetical protein
48	 32.16	0	42814..44436	+	540	41614845	-	NEQ050	-	hypothetical protein
49	 30.88	0	44420..45112	-	230	41614846	-	NEQ049	-	hypothetical protein
50	 31.78	0	45112..45753	-	213	41614847	-	NEQ051	-	hypothetical protein
51	 32.96	0	45858..46934	+	358	41614848	-	NEQ052	-	peptide chain release factor 1
52	 30.36	0	46948..48291	-	447	41614849	-	NEQ053	-	hypothetical protein
53	 30.17	0	48404..48814	-	136	41614850	-	NEQ054	-	hypothetical protein
54	 30.35	0	48853..50226	+	457	41614851	-	NEQ055	-	hypothetical protein
55	 30.24	0	50213..51247	+	344	41614852	-	NEQ057	-	hypothetical protein
56	 27.11	-1	51234..51779	-	181	41614853	-	NEQ056	-	hypothetical protein
57	 37.96	+2	51760..52191	-	143	41614854	rps12P	NEQ058	-	30S ribosomal protein S12P
58	 33.11	0	52238..54031	+	597	41614855	-	NEQ059	-	ATPase
59	 28.47	0	54182..54736	+	184	41614856	-	NEQ060	-	hypothetical protein
60	 29.18	0	55825..56691	+	288	41614857	-	NEQ061	-	hypothetical protein
61	 27.88	-1	56818..58431	-	537	41614858	-	NEQ062	-	hypothetical protein
62	 29.85	0	58428..59030	-	200	41614859	-	NEQ063	-	hypothetical protein
63	 30.28	0	59011..59961	-	316	41614860	-	NEQ064	-	hypothetical protein
64	 32.07	0	59997..60233	+	78	41614861	-	NEQ065	-	hypothetical protein
65	 26.89	-1	60445..61065	-	206	41614862	-	NEQ066	-	hypothetical protein
66	 29.37	0	61050..61805	-	251	41614863	-	NEQ067	-	hypothetical protein
67	 30.43	0	61786..63816	-	676	41614864	-	NEQ068	-	hypothetical protein
68	 43.00	+2	63752..64144	-	130	41614865	rps11p	NEQ069	-	30S ribosomal protein S11P
69	 34.46	+1	64202..64999	+	265	41614866	-	NEQ070	-	hypothetical protein
70	 30.98	0	64996..65676	+	226	41614867	-	NEQ072	-	hypothetical protein
71	 28.77	0	65668..66171	-	167	41614868	-	NEQ071	-	hypothetical protein
72	 28.25	0	66140..66709	-	189	41614869	-	NEQ073	-	hypothetical protein
73	 28.50	0	66875..67453	-	192	41614870	-	NEQ074	-	hypothetical protein
74	 36.22	+1	67483..68070	-	195	41614871	rpl18p	NEQ075	-	50S ribosomal protein L18P
75	 33.96	0	68064..69971	+	635	41614872	-	NEQ076	-	hypothetical protein
76	 35.14	+1	69993..71207	+	404	41614873	-	NEQ077	-	hypothetical protein
77	 31.23	0	71224..72033	+	269	41614874	-	NEQ077a	-	hypothetical protein
78	 35.77	+1	72158..73591	+	477	41614875	-	NEQ078	-	hypothetical protein
79	 34.18	+1	73896..74843	+	315	41614876	-	NEQ079	-	hypothetical protein
80	 33.83	0	74944..76152	+	402	41614877	-	NEQ080	-	hypothetical protein
81	 30.35	0	76183..76785	+	200	41614878	-	NEQ081	-	hypothetical protein
82	 38.25	+2	76817..78118	+	433	41614879	-	NEQ082	-	elongation factor 1-alpha
83	 28.79	0	78118..78447	+	109	41614880	rps10p	NEQ083	-	30S ribosomal protein S10P
84	 30.69	0	78469..79527	+	352	41614881	-	NEQ084	-	hypothetical protein
85	 26.52	-1	79524..80051	+	175	41614882	-	NEQ085	-	hypothetical protein
86	 29.38	0	80035..81528	+	497	41614883	-	NEQ086	-	hypothetical protein
87	 32.94	0	81536..82555	+	339	41614884	-	NEQ088	-	flap endonuclease-1
88	 30.15	0	82536..84323	-	595	41614885	-	NEQ087	-	hypothetical protein
89	 28.88	0	84323..85018	-	231	41614886	-	NEQ089	-	hypothetical protein
90	 27.50	-1	85021..86202	-	393	41614887	-	NEQ090	-	hypothetical protein
91	 31.35	0	86186..87040	-	284	41614888	rplP0	NEQ091	-	acidic ribosomal protein P0
92	 35.57	+1	87069..87470	-	133	41614889	rpl14p	NEQ092	-	50S ribosomal protein L14P
93	 24.80	-2	87733..88353	+	206	41614890	-	NEQ094	-	hypothetical protein
94	 32.94	0	88346..88855	-	169	41614891	rpl5p	NEQ093	-	50S ribosomal protein L5P
95	 28.67	0	88887..89444	+	185	41614892	-	NEQ095	-	hypothetical protein
96	 31.41	0	89466..90296	+	276	41614893	-	NEQ096	-	hypothetical protein
97	 27.83	-1	90266..90919	+	217	41614894	-	NEQ097	-	hypothetical protein
98	 32.49	0	90946..91776	-	276	41614895	-	NEQ098	-	hypothetical protein
99	 37.97	+2	91875..92651	+	258	41614896	-	NEQ099	-	hypothetical protein
100	 35.70	+1	92624..93595	+	323	41614897	-	NEQ100	-	hypothetical protein
101	 38.51	+2	93702..94184	+	160	41614898	-	NEQ101	-	hypothetical protein
102	 33.57	0	94177..95889	+	570	41614899	-	NEQ103	-	V-type ATP synthase subunit A
103	 32.18	0	95849..97063	-	404	41614900	hisS	NEQ102	-	histidyl-tRNA synthetase
104	 29.87	0	97060..98040	-	326	41614901	-	NEQ104	-	hypothetical protein
105	 34.65	+1	98037..98417	-	126	41614902	-	NEQ105	-	30S ribosomal protein S6e
106	 28.66	0	98707..99819	+	370	41614903	-	NEQ107	-	hypothetical protein
31.10	MEAN

2.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.