IslandPath Analysis: Nanoarchaeum equitans Kin4-M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.10   STD DEV: 2.97
Nanoarchaeum equitans Kin4-M, complete genome - 1..490885
536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
352	 39.33	+2	313666..313932	-	88	41615149	rps28e	NEQ359	-	30S ribosomal protein S28e
353	 39.47	+2	313982..314698	+	238	41615150	rpl2p	NEQ361	-	50S ribosomal protein L2P
354	 32.64	0	314673..315971	-	432	41615151	-	NEQ360	-	hypothetical protein
355	 29.44	0	316076..316846	+	256	41615152	-	NEQ362	-	hypothetical protein
356	 35.16	+1	316877..317149	+	90	41615153	-	NEQ363	-	chromatin protein
357	 30.83	0	317151..317390	-	79	41615154	-	NEQ364	-	hypothetical protein
358	 29.50	0	317694..318866	-	390	41615155	-	NEQ365	-	hypothetical protein
359	 30.86	0	318940..319626	-	228	41615156	-	NEQ366	-	hypothetical protein
360	 28.40	0	319619..320206	-	195	41615157	-	NEQ367	-	hypothetical protein
361	 34.35	+1	320437..321318	+	293	41615158	-	NEQ368	-	hypothetical protein
362	 30.19	0	321315..322937	+	540	41615159	-	NEQ369	-	hypothetical protein
363	 29.30	0	323064..323609	-	181	41615160	-	NEQ370	-	DNA-directed RNA polymerase subunit E'
364	 32.16	0	323644..324240	+	198	41615161	-	NEQ372	-	hypothetical protein
365	 29.25	0	324233..325015	-	260	41615162	-	NEQ371	-	hypothetical protein
366	 39.91	+2	325116..325343	-	75	41615163	-	NEQ373	-	hypothetical protein
367	 31.43	0	325602..326285	+	227	41615164	-	NEQ375	-	30S ribosomal protein S3Ae
368	 29.73	0	326455..326982	+	175	41615165	-	NEQ376	-	hypothetical protein
369	 33.33	0	327013..327333	+	106	41615166	-	NEQ377	-	hypothetical protein
370	 33.02	0	328225..328872	-	215	41615167	-	NEQ378	-	hypothetical protein
371	 34.46	+1	328987..329430	+	147	41615168	rpl19e	NEQ379	-	50S ribosomal protein L19e
372	 27.27	-1	329427..330944	+	505	41615169	-	NEQ380	-	hypothetical protein
373	 33.06	0	330966..331703	+	245	41615170	-	NEQ381	-	hypothetical protein
374	 29.93	0	331796..332881	+	361	41615171	-	NEQ383	-	hypothetical protein
375	 30.89	0	332847..333908	-	353	41615172	-	NEQ382	-	tRNA-modifying enzyme
376	 30.47	0	333862..334560	+	232	41615173	-	NEQ384	-	hypothetical protein
377	 34.17	+1	334635..334991	+	118	41615174	-	NEQ386	-	hypothetical protein
378	 30.60	0	334965..335330	-	121	41615175	-	NEQ385	-	hypothetical protein
379	 30.04	0	335454..337457	+	667	41615176	-	NEQ387	-	Hef nuclease
380	 34.77	+1	337497..338192	-	231	41615177	rps5p	NEQ388	-	30S ribosomal protein S5P
381	 31.74	0	338223..339353	-	376	41615178	-	NEQ389	-	tyrosyl-tRNA synthetase
382	 28.16	0	339701..340183	+	160	41615179	-	NEQ392	-	hypothetical protein
383	 29.58	0	340103..343141	-	1012	41615180	-	NEQ391	-	hypothetical protein
384	 34.68	+1	343170..343613	-	147	41615181	-	NEQ393	-	translation initiation factor IF-5A
385	 28.77	0	343651..344637	+	328	41615182	-	NEQ396	-	hypothetical protein
386	 31.05	0	344626..345807	-	393	41615183	-	NEQ395	-	hypothetical protein
387	 33.33	0	345800..346312	-	170	41615184	-	NEQ397	-	50S ribosomal protein L21e
388	 31.46	0	346125..346763	+	212	41615185	-	NEQ398	-	hypothetical protein
389	 33.45	0	346764..347618	+	284	41615186	-	NEQ399	-	methionine aminopeptidase
390	 33.13	0	347905..348897	+	330	41615187	-	NEQ401	-	hypothetical protein
391	 29.65	0	349065..349715	+	216	41615188	-	NEQ403	-	hypothetical protein
392	 32.36	0	349712..350635	-	307	41615189	-	NEQ402	-	putative deoxyhypusine synthase
393	 28.99	0	350635..353787	-	1050	41615190	-	NEQ404	-	hypothetical protein
394	 30.58	0	353756..354517	-	253	41615191	-	NEQ405	-	translation initiation factor IF-2 subunit alpha
395	 28.17	0	354514..355404	-	296	41615192	-	NEQ406	-	hypothetical protein
396	 31.03	0	355436..355912	+	158	41615193	-	NEQ408	-	hypothetical protein
397	 25.04	-2	355903..356505	-	200	41615194	-	NEQ407	-	hypothetical protein
398	 28.48	0	356596..357378	-	260	41615195	-	NEQ409	-	hypothetical protein
399	 28.65	0	357366..358754	-	462	41615196	-	NEQ410	-	hypothetical protein
400	 29.09	0	359117..359446	+	109	41615197	-	NEQ411	-	hypothetical protein
401	 33.33	0	359467..360798	-	443	41615198	-	NEQ412	-	hypothetical protein
402	 31.62	0	360845..361135	+	96	41615199	-	NEQ413	-	hypothetical protein
403	 31.44	0	361132..361713	+	193	41615200	-	NEQ415	-	hypothetical protein
404	 31.90	0	361698..362396	-	232	41615201	-	NEQ414	-	hypothetical protein
405	 30.68	0	362393..362731	-	112	41615202	-	NEQ416	-	hypothetical protein
406	 32.75	0	362782..364320	-	512	41615203	-	NEQ417	-	glycyl-tRNA synthetase
407	 31.12	0	364338..365603	-	421	41615204	-	NEQ418	-	hypothetical protein
408	 33.41	0	365708..369439	+	1243	41615205	-	NEQ420	-	DNA polymerase II large subunit
409	 27.96	-1	369426..369965	-	179	41615206	-	NEQ419	-	hypothetical protein
410	 31.89	0	370202..370894	+	230	41615207	-	NEQ421	-	hypothetical protein
411	 29.51	0	370891..371544	+	217	41615208	-	NEQ422	-	diphthine synthase
412	 31.48	0	371519..371896	+	125	41615209	-	NEQ424	-	hypothetical protein
413	 28.88	0	371886..373187	-	433	41615210	-	NEQ423	-	hypothetical protein
414	 30.86	0	373177..375321	-	714	41615211	-	NEQ425	-	hypothetical protein
415	 37.22	+2	375398..376375	-	325	41615212	radA	NEQ426	-	DNA repair and recombination protein RadA
416	 32.18	0	376397..377521	-	374	41615213	-	NEQ427	-	DNA-directed RNA polymerase subunit A''
417	 30.16	0	377727..378041	-	104	41615214	-	NEQ428	-	hypothetical protein
418	 30.26	0	378010..378465	-	151	41615215	-	NEQ429	-	hypothetical protein
419	 32.17	0	378494..379786	+	430	41615216	-	NEQ430	-	replication factor C large subunit
420	 34.00	0	379770..380366	+	198	41615217	-	NEQ431	-	hypothetical protein
421	 34.58	+1	380753..381718	+	321	41615218	rpl3p	NEQ433	-	50S ribosomal protein L3P
422	 27.07	-1	381715..382305	-	196	41615219	-	NEQ432	-	hypothetical protein
423	 30.79	0	382482..384209	-	575	41615220	-	NEQ434	-	hypothetical protein
424	 31.12	0	384271..384993	-	240	41615221	-	NEQ435	-	hypothetical protein
425	 30.54	0	384998..386395	-	465	41615222	-	NEQ436	-	hypothetical protein
426	 29.50	0	386392..387147	-	251	41615223	-	NEQ437	-	preprotein translocase subunit SecF
427	 27.93	-1	387180..388178	+	332	41615224	-	NEQ438	-	hypothetical protein
428	 31.42	0	388175..389062	+	295	41615225	-	NEQ440	-	hypothetical protein
429	 32.39	0	389084..391411	+	775	41615226	-	NEQ442	-	hypothetical protein
430	 35.54	+1	391408..391950	-	180	41615227	-	NEQ441	-	hypothetical protein
431	 26.14	-1	391916..392485	-	189	41615228	-	NEQ443	-	hypothetical protein
432	 35.47	+1	392551..393300	+	249	41615229	-	NEQ444	-	hypothetical protein
433	 31.41	0	393310..393882	+	190	41615230	-	NEQ445	-	hypothetical protein
434	 35.52	+1	397016..397426	+	136	41615231	rps9p	NEQ446	-	30S ribosomal protein S9P
435	 27.78	-1	397402..397779	+	125	41615232	-	NEQ448	-	hypothetical protein
436	 28.45	0	397739..398209	-	156	41615233	-	NEQ447	-	hypothetical protein
437	 31.72	0	398172..398666	-	164	41615234	-	NEQ449	-	hypothetical protein
438	 36.19	+1	398719..399279	-	186	41615235	rpl10e	NEQ450	-	50S ribosomal protein L10e
439	 29.43	0	399328..399840	+	170	41615236	-	NEQ451	-	hypothetical protein
440	 32.02	0	399847..400530	+	227	41615237	-	NEQ452	-	hypothetical protein
441	 30.33	0	400523..401254	+	243	41615238	-	NEQ453	-	hypothetical protein
442	 34.38	+1	401263..402309	-	348	41615239	-	NEQ454	-	H/ACA RNA-protein complex component Cbf5p
443	 27.68	-1	402648..403460	+	270	41615240	-	NEQ455	-	hypothetical protein
444	 30.93	0	403546..405876	+	776	41615241	-	NEQ457	-	hypothetical protein
445	 30.77	0	405851..406591	-	246	41615242	-	NEQ456	-	hypothetical protein
446	 29.82	0	406638..407576	+	312	41615243	-	NEQ458	-	hypothetical protein
447	 33.47	0	407680..408399	-	239	41615244	-	NEQ459	-	hypothetical protein
448	 30.28	0	408446..409198	+	250	41615245	-	NEQ460	-	hypothetical protein
449	 31.68	0	409289..409771	-	160	41615246	-	NEQ461	-	hypothetical protein
450	 34.27	+1	409864..411900	+	678	41615247	-	NEQ462	-	hypothetical protein
451	 30.84	0	411930..412772	+	280	41615248	-	NEQ464	-	hypothetical protein
31.10	MEAN

2.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.