IslandPath Analysis: Nanoarchaeum equitans Kin4-M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.10   STD DEV: 2.97
Nanoarchaeum equitans Kin4-M, complete genome - 1..490885
536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
88	 30.15	0	82536..84323	-	595	41614885	-	NEQ087	-	hypothetical protein
89	 28.88	0	84323..85018	-	231	41614886	-	NEQ089	-	hypothetical protein
90	 27.50	-1	85021..86202	-	393	41614887	-	NEQ090	-	hypothetical protein
91	 31.35	0	86186..87040	-	284	41614888	rplP0	NEQ091	-	acidic ribosomal protein P0
92	 35.57	+1	87069..87470	-	133	41614889	rpl14p	NEQ092	-	50S ribosomal protein L14P
93	 24.80	-2	87733..88353	+	206	41614890	-	NEQ094	-	hypothetical protein
94	 32.94	0	88346..88855	-	169	41614891	rpl5p	NEQ093	-	50S ribosomal protein L5P
95	 28.67	0	88887..89444	+	185	41614892	-	NEQ095	-	hypothetical protein
96	 31.41	0	89466..90296	+	276	41614893	-	NEQ096	-	hypothetical protein
97	 27.83	-1	90266..90919	+	217	41614894	-	NEQ097	-	hypothetical protein
98	 32.49	0	90946..91776	-	276	41614895	-	NEQ098	-	hypothetical protein
99	 37.97	+2	91875..92651	+	258	41614896	-	NEQ099	-	hypothetical protein
100	 35.70	+1	92624..93595	+	323	41614897	-	NEQ100	-	hypothetical protein
101	 38.51	+2	93702..94184	+	160	41614898	-	NEQ101	-	hypothetical protein
102	 33.57	0	94177..95889	+	570	41614899	-	NEQ103	-	V-type ATP synthase subunit A
103	 32.18	0	95849..97063	-	404	41614900	hisS	NEQ102	-	histidyl-tRNA synthetase
104	 29.87	0	97060..98040	-	326	41614901	-	NEQ104	-	hypothetical protein
105	 34.65	+1	98037..98417	-	126	41614902	-	NEQ105	-	30S ribosomal protein S6e
106	 28.66	0	98707..99819	+	370	41614903	-	NEQ107	-	hypothetical protein
107	 29.19	0	99803..100720	+	305	41614904	-	NEQ109	-	hypothetical protein
108	 31.07	0	100695..101753	-	352	41614905	-	NEQ108	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
109	 28.11	-1	101750..103012	-	420	41614906	-	NEQ110	-	hypothetical protein
110	 32.12	0	103009..103665	-	218	41614907	-	NEQ111	-	exosome complex RNA-binding protein Rrp42
111	 31.20	0	103692..104675	-	327	41614908	-	NEQ112	-	hypothetical protein
112	 26.98	-1	104665..105105	-	146	41614909	-	NEQ113	-	hypothetical protein
113	 29.00	0	105115..106176	-	353	41614910	-	NEQ114	-	hypothetical protein
114	 33.07	0	106158..107291	-	377	41614911	-	NEQ115	-	tryptophanyl-tRNA synthetase
115	 28.93	0	107320..107637	+	105	41614912	-	NEQ116	-	hypothetical protein
116	 31.85	0	107634..108647	+	337	41614913	-	NEQ118	-	hypothetical protein
117	 29.85	0	108613..109071	-	152	41614914	-	NEQ117	-	hypothetical protein
118	 32.65	0	109068..109802	-	244	41614915	-	NEQ119	-	hypothetical protein
119	 29.82	0	109843..110610	-	255	41614916	-	NEQ120	-	hypothetical protein
120	 28.69	0	110671..111036	+	121	41614917	-	NEQ121	-	hypothetical protein
121	 34.33	+1	111051..111551	+	166	41614918	-	NEQ123	-	hypothetical protein
122	 32.68	0	111540..112301	-	253	41614919	-	NEQ122	-	hypothetical protein
123	 30.68	0	112319..113563	-	414	41614920	-	NEQ124	-	hypothetical protein
124	 32.76	0	113656..114354	+	232	41614921	-	NEQ125	-	fibrillarin
125	 33.25	0	114348..115526	+	392	41614922	-	NEQ126	-	glutamyl-tRNA(Gln) amidotransferase subunit D
126	 28.39	0	115523..115906	+	127	41614923	-	NEQ126a	-	hypothetical protein
127	 33.60	0	115826..117727	-	633	41614924	-	NEQ127	-	hypothetical protein
128	 28.93	0	117758..118801	-	347	41614925	-	NEQ128	-	hypothetical protein
129	 36.06	+1	118934..119263	+	109	41614926	-	NEQ130	-	translation initiation factor IF-1A
130	 31.66	0	119242..120135	-	297	41614927	-	NEQ129	-	hypothetical protein
131	 30.11	0	120161..120718	+	185	41614928	-	NEQ131	-	hypothetical protein
132	 35.58	+1	120868..121935	+	355	41614929	-	NEQ133	-	cell division protein FtsZ
133	 31.17	0	121928..122527	-	199	41614930	-	NEQ132	-	hypothetical protein
134	 31.01	0	122482..123342	-	286	41614931	-	NEQ134	-	hypothetical protein
135	 29.86	0	123318..124844	-	508	41614932	-	NEQ135	-	hypothetical protein
136	 31.78	0	124805..125575	-	256	41614933	-	NEQ136	-	hypothetical protein
137	 31.29	0	125554..127263	-	569	41614934	-	NEQ137	-	hypothetical protein
138	 26.31	-1	127297..128406	+	369	41614935	-	NEQ139	-	hypothetical protein
139	 29.13	0	128285..128998	-	237	41614936	-	NEQ138	-	hypothetical protein
140	 27.99	-1	128980..129858	-	292	41614937	-	NEQ140	-	hypothetical protein
141	 36.91	+1	129888..131510	-	540	41614938	-	NEQ141	-	hypothetical protein
142	 32.51	0	131657..133360	+	567	41614939	-	NEQ144	-	DNA topoisomerase VI subunit B
143	 31.10	0	133334..133780	-	148	41614940	-	NEQ143	-	hypothetical protein
144	 36.43	+1	133827..134633	+	268	41614941	rpl4lp	NEQ146	-	50S ribosomal protein L4P
145	 30.43	0	134598..135251	-	217	41614942	-	NEQ145	-	hypothetical protein
146	 28.86	0	135374..135775	-	133	41614943	-	NEQ147	-	hypothetical protein
147	 33.26	0	135711..137045	-	444	41614944	-	NEQ148	-	hypothetical protein
148	 29.59	0	137072..137365	+	97	41614945	-	NEQ150	-	hypothetical protein
149	 26.70	-1	137352..137894	-	180	41614946	-	NEQ149	-	hypothetical protein
150	 31.68	0	137891..138193	-	100	41614947	-	NEQ151	-	hypothetical protein
151	 28.92	0	138302..139480	-	392	41614948	-	NEQ152	-	hypothetical protein
152	 29.08	0	139480..139761	-	93	41614949	-	NEQ153	-	hypothetical protein
153	 33.07	0	139792..140172	-	126	41614950	-	NEQ154	-	hypothetical protein
154	 29.45	0	140260..143145	-	961	41614951	-	NEQ155	-	hypothetical protein
155	 35.49	+1	143109..144920	-	603	41614952	-	NEQ156	-	DNA-directed RNA polymerase subunit B'
156	 29.38	0	144973..145932	-	319	41614953	-	NEQ157	-	hypothetical protein
157	 30.93	0	146043..146624	+	193	41614954	-	NEQ158	-	hypothetical protein
158	 34.26	+1	146728..147267	-	179	41614955	-	NEQ159	-	hypothetical protein
159	 29.73	0	147299..148270	+	323	41614956	-	NEQ160	-	hypothetical protein
160	 31.30	0	148267..149250	+	327	41614957	-	NEQ162	-	hypothetical protein
161	 33.33	0	149202..149369	-	55	41614958	-	NEQ161	-	hypothetical protein
162	 27.45	-1	149411..149716	-	101	41614959	-	NEQ163	-	hypothetical protein
163	 29.91	0	149706..150581	-	291	41614960	-	NEQ164	-	hypothetical protein
164	 29.82	0	150796..151422	-	208	41614961	-	NEQ165	-	hypothetical protein
165	 27.81	-1	151349..151945	-	198	41614962	-	NEQ166	-	hypothetical protein
166	 31.94	0	152110..153540	+	476	41614963	-	NEQ168	-	preprotein translocase subunit SecY
167	 34.37	+1	153568..154536	+	322	41614964	rfc	NEQ170	-	replication factor C small subunit
168	 34.09	+1	154526..156382	-	618	41614965	-	NEQ169	-	hypothetical protein
169	 28.09	-1	156422..157489	-	355	41614966	-	NEQ171	-	hypothetical protein
170	 30.27	0	157465..158379	-	304	41614967	-	NEQ172	-	hypothetical protein
171	 31.92	0	158308..159789	+	493	41614968	-	NEQ173	-	DNA-directed RNA polymerase subunit beta''
172	 30.80	0	159773..160918	+	381	41614969	-	NEQ175	-	hypothetical protein
173	 38.13	+2	160915..161685	-	256	41614970	-	NEQ174	-	hypothetical protein
174	 33.87	0	161733..161918	+	61	41614971	-	NEQ176	-	hypothetical protein
175	 31.39	0	162031..163932	-	633	41614972	-	NEQ177	-	threonyl-tRNA synthetase
176	 33.91	0	164310..164654	+	114	41614973	-	NEQ178	-	50S ribosomal protein L14e
177	 29.89	0	164686..164946	+	86	41614974	-	NEQ179	-	hypothetical protein
178	 32.12	0	164948..165358	+	136	41614975	-	NEQ180	-	hypothetical protein
179	 26.80	-1	165355..165645	+	96	41614976	-	NEQ182	-	hypothetical protein
180	 36.82	+1	165635..166207	-	190	41614977	-	NEQ181	-	50S ribosomal protein L15e
181	 34.25	+1	166244..166570	+	108	41614978	-	NEQ183	-	hypothetical protein
182	 31.16	0	166567..167163	+	198	41614979	-	NEQ184	-	exosome complex RNA-binding protein Rrp4
183	 31.41	0	167163..168512	+	449	41614980	gatB	NEQ185	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
184	 33.51	0	168505..169614	+	369	41614981	-	NEQ186	-	proteasome-activating nucleotidase
185	 27.73	-1	169614..169934	+	106	41614982	-	NEQ188	-	hypothetical protein
186	 35.00	+1	169924..170403	-	159	161511236	-	NEQ187	-	30S ribosomal protein S19e
187	 31.88	0	170432..171328	+	298	41614984	-	NEQ190	-	hypothetical protein
31.10	MEAN

2.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.