IslandPath Analysis: Nanoarchaeum equitans Kin4-M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.10   STD DEV: 2.97
Nanoarchaeum equitans Kin4-M, complete genome - 1..490885
536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
52	 30.36	0	46948..48291	-	447	41614849	-	NEQ053	-	hypothetical protein
53	 30.17	0	48404..48814	-	136	41614850	-	NEQ054	-	hypothetical protein
54	 30.35	0	48853..50226	+	457	41614851	-	NEQ055	-	hypothetical protein
55	 30.24	0	50213..51247	+	344	41614852	-	NEQ057	-	hypothetical protein
56	 27.11	-1	51234..51779	-	181	41614853	-	NEQ056	-	hypothetical protein
57	 37.96	+2	51760..52191	-	143	41614854	rps12P	NEQ058	-	30S ribosomal protein S12P
58	 33.11	0	52238..54031	+	597	41614855	-	NEQ059	-	ATPase
59	 28.47	0	54182..54736	+	184	41614856	-	NEQ060	-	hypothetical protein
60	 29.18	0	55825..56691	+	288	41614857	-	NEQ061	-	hypothetical protein
61	 27.88	-1	56818..58431	-	537	41614858	-	NEQ062	-	hypothetical protein
62	 29.85	0	58428..59030	-	200	41614859	-	NEQ063	-	hypothetical protein
63	 30.28	0	59011..59961	-	316	41614860	-	NEQ064	-	hypothetical protein
64	 32.07	0	59997..60233	+	78	41614861	-	NEQ065	-	hypothetical protein
65	 26.89	-1	60445..61065	-	206	41614862	-	NEQ066	-	hypothetical protein
66	 29.37	0	61050..61805	-	251	41614863	-	NEQ067	-	hypothetical protein
67	 30.43	0	61786..63816	-	676	41614864	-	NEQ068	-	hypothetical protein
68	 43.00	+2	63752..64144	-	130	41614865	rps11p	NEQ069	-	30S ribosomal protein S11P
69	 34.46	+1	64202..64999	+	265	41614866	-	NEQ070	-	hypothetical protein
70	 30.98	0	64996..65676	+	226	41614867	-	NEQ072	-	hypothetical protein
71	 28.77	0	65668..66171	-	167	41614868	-	NEQ071	-	hypothetical protein
72	 28.25	0	66140..66709	-	189	41614869	-	NEQ073	-	hypothetical protein
73	 28.50	0	66875..67453	-	192	41614870	-	NEQ074	-	hypothetical protein
74	 36.22	+1	67483..68070	-	195	41614871	rpl18p	NEQ075	-	50S ribosomal protein L18P
75	 33.96	0	68064..69971	+	635	41614872	-	NEQ076	-	hypothetical protein
76	 35.14	+1	69993..71207	+	404	41614873	-	NEQ077	-	hypothetical protein
77	 31.23	0	71224..72033	+	269	41614874	-	NEQ077a	-	hypothetical protein
78	 35.77	+1	72158..73591	+	477	41614875	-	NEQ078	-	hypothetical protein
79	 34.18	+1	73896..74843	+	315	41614876	-	NEQ079	-	hypothetical protein
80	 33.83	0	74944..76152	+	402	41614877	-	NEQ080	-	hypothetical protein
81	 30.35	0	76183..76785	+	200	41614878	-	NEQ081	-	hypothetical protein
82	 38.25	+2	76817..78118	+	433	41614879	-	NEQ082	-	elongation factor 1-alpha
83	 28.79	0	78118..78447	+	109	41614880	rps10p	NEQ083	-	30S ribosomal protein S10P
84	 30.69	0	78469..79527	+	352	41614881	-	NEQ084	-	hypothetical protein
85	 26.52	-1	79524..80051	+	175	41614882	-	NEQ085	-	hypothetical protein
86	 29.38	0	80035..81528	+	497	41614883	-	NEQ086	-	hypothetical protein
87	 32.94	0	81536..82555	+	339	41614884	-	NEQ088	-	flap endonuclease-1
88	 30.15	0	82536..84323	-	595	41614885	-	NEQ087	-	hypothetical protein
89	 28.88	0	84323..85018	-	231	41614886	-	NEQ089	-	hypothetical protein
90	 27.50	-1	85021..86202	-	393	41614887	-	NEQ090	-	hypothetical protein
91	 31.35	0	86186..87040	-	284	41614888	rplP0	NEQ091	-	acidic ribosomal protein P0
92	 35.57	+1	87069..87470	-	133	41614889	rpl14p	NEQ092	-	50S ribosomal protein L14P
93	 24.80	-2	87733..88353	+	206	41614890	-	NEQ094	-	hypothetical protein
94	 32.94	0	88346..88855	-	169	41614891	rpl5p	NEQ093	-	50S ribosomal protein L5P
95	 28.67	0	88887..89444	+	185	41614892	-	NEQ095	-	hypothetical protein
96	 31.41	0	89466..90296	+	276	41614893	-	NEQ096	-	hypothetical protein
97	 27.83	-1	90266..90919	+	217	41614894	-	NEQ097	-	hypothetical protein
98	 32.49	0	90946..91776	-	276	41614895	-	NEQ098	-	hypothetical protein
99	 37.97	+2	91875..92651	+	258	41614896	-	NEQ099	-	hypothetical protein
100	 35.70	+1	92624..93595	+	323	41614897	-	NEQ100	-	hypothetical protein
101	 38.51	+2	93702..94184	+	160	41614898	-	NEQ101	-	hypothetical protein
102	 33.57	0	94177..95889	+	570	41614899	-	NEQ103	-	V-type ATP synthase subunit A
103	 32.18	0	95849..97063	-	404	41614900	hisS	NEQ102	-	histidyl-tRNA synthetase
104	 29.87	0	97060..98040	-	326	41614901	-	NEQ104	-	hypothetical protein
105	 34.65	+1	98037..98417	-	126	41614902	-	NEQ105	-	30S ribosomal protein S6e
106	 28.66	0	98707..99819	+	370	41614903	-	NEQ107	-	hypothetical protein
107	 29.19	0	99803..100720	+	305	41614904	-	NEQ109	-	hypothetical protein
108	 31.07	0	100695..101753	-	352	41614905	-	NEQ108	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
109	 28.11	-1	101750..103012	-	420	41614906	-	NEQ110	-	hypothetical protein
110	 32.12	0	103009..103665	-	218	41614907	-	NEQ111	-	exosome complex RNA-binding protein Rrp42
111	 31.20	0	103692..104675	-	327	41614908	-	NEQ112	-	hypothetical protein
112	 26.98	-1	104665..105105	-	146	41614909	-	NEQ113	-	hypothetical protein
113	 29.00	0	105115..106176	-	353	41614910	-	NEQ114	-	hypothetical protein
114	 33.07	0	106158..107291	-	377	41614911	-	NEQ115	-	tryptophanyl-tRNA synthetase
115	 28.93	0	107320..107637	+	105	41614912	-	NEQ116	-	hypothetical protein
116	 31.85	0	107634..108647	+	337	41614913	-	NEQ118	-	hypothetical protein
117	 29.85	0	108613..109071	-	152	41614914	-	NEQ117	-	hypothetical protein
118	 32.65	0	109068..109802	-	244	41614915	-	NEQ119	-	hypothetical protein
119	 29.82	0	109843..110610	-	255	41614916	-	NEQ120	-	hypothetical protein
120	 28.69	0	110671..111036	+	121	41614917	-	NEQ121	-	hypothetical protein
121	 34.33	+1	111051..111551	+	166	41614918	-	NEQ123	-	hypothetical protein
122	 32.68	0	111540..112301	-	253	41614919	-	NEQ122	-	hypothetical protein
123	 30.68	0	112319..113563	-	414	41614920	-	NEQ124	-	hypothetical protein
124	 32.76	0	113656..114354	+	232	41614921	-	NEQ125	-	fibrillarin
125	 33.25	0	114348..115526	+	392	41614922	-	NEQ126	-	glutamyl-tRNA(Gln) amidotransferase subunit D
126	 28.39	0	115523..115906	+	127	41614923	-	NEQ126a	-	hypothetical protein
127	 33.60	0	115826..117727	-	633	41614924	-	NEQ127	-	hypothetical protein
128	 28.93	0	117758..118801	-	347	41614925	-	NEQ128	-	hypothetical protein
129	 36.06	+1	118934..119263	+	109	41614926	-	NEQ130	-	translation initiation factor IF-1A
130	 31.66	0	119242..120135	-	297	41614927	-	NEQ129	-	hypothetical protein
131	 30.11	0	120161..120718	+	185	41614928	-	NEQ131	-	hypothetical protein
132	 35.58	+1	120868..121935	+	355	41614929	-	NEQ133	-	cell division protein FtsZ
133	 31.17	0	121928..122527	-	199	41614930	-	NEQ132	-	hypothetical protein
134	 31.01	0	122482..123342	-	286	41614931	-	NEQ134	-	hypothetical protein
135	 29.86	0	123318..124844	-	508	41614932	-	NEQ135	-	hypothetical protein
136	 31.78	0	124805..125575	-	256	41614933	-	NEQ136	-	hypothetical protein
137	 31.29	0	125554..127263	-	569	41614934	-	NEQ137	-	hypothetical protein
138	 26.31	-1	127297..128406	+	369	41614935	-	NEQ139	-	hypothetical protein
139	 29.13	0	128285..128998	-	237	41614936	-	NEQ138	-	hypothetical protein
140	 27.99	-1	128980..129858	-	292	41614937	-	NEQ140	-	hypothetical protein
141	 36.91	+1	129888..131510	-	540	41614938	-	NEQ141	-	hypothetical protein
142	 32.51	0	131657..133360	+	567	41614939	-	NEQ144	-	DNA topoisomerase VI subunit B
143	 31.10	0	133334..133780	-	148	41614940	-	NEQ143	-	hypothetical protein
144	 36.43	+1	133827..134633	+	268	41614941	rpl4lp	NEQ146	-	50S ribosomal protein L4P
145	 30.43	0	134598..135251	-	217	41614942	-	NEQ145	-	hypothetical protein
146	 28.86	0	135374..135775	-	133	41614943	-	NEQ147	-	hypothetical protein
147	 33.26	0	135711..137045	-	444	41614944	-	NEQ148	-	hypothetical protein
148	 29.59	0	137072..137365	+	97	41614945	-	NEQ150	-	hypothetical protein
149	 26.70	-1	137352..137894	-	180	41614946	-	NEQ149	-	hypothetical protein
150	 31.68	0	137891..138193	-	100	41614947	-	NEQ151	-	hypothetical protein
151	 28.92	0	138302..139480	-	392	41614948	-	NEQ152	-	hypothetical protein
31.10	MEAN

2.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.