IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
858	 60.98	-1	940272..941132	-	286	148822049	-	TBFG_10858	-	proline iminopeptidase pip
859	 67.34	0	941891..943219	+	442	148822050	-	TBFG_10859	-	integral membrane protein
860	 64.58	0	943203..944207	+	334	148822051	-	TBFG_10860	-	dehydrogenase
861	 67.74	0	944271..944921	-	216	148822052	-	TBFG_10861	-	nitrate/nitrite response transcriptional regulatory protein narL
862	 62.75	0	945005..946282	+	425	148822053	-	TBFG_10862	-	two component sensor kinase
863	 64.82	0	946495..948009	-	504	148822054	-	TBFG_10863	-	oxidase
864	 69.54	+1	948134..948550	+	138	148822055	-	TBFG_10864	-	lipoprotein lpqS
865	 65.50	0	948753..949871	+	372	148822056	-	TBFG_10865	-	cysteine synthase A cysK2
866	 63.81	0	949871..951130	+	419	148822057	-	TBFG_10866	-	integral membrane transport protein
867	 61.26	-1	951127..951459	+	110	148822058	-	TBFG_10867	-	transposase
868	 66.06	0	951456..952283	-	275	148822059	-	TBFG_10868	-	short chain dehydrogenase
869	 61.65	-1	952374..953210	+	278	148822060	-	TBFG_10869	-	fatty-acid-CoA ligase fadD16
870	 66.07	0	953251..954933	-	560	148822061	-	TBFG_10870	-	pyruvate or indole-3-pyruvate decarboxylase pdc
871	 59.23	-1	954998..955441	+	147	148822062	-	TBFG_10871	-	hypothetical protein
872	 66.76	0	955447..956526	+	359	148822063	-	TBFG_10872	-	fatty-acid-CoA racemase far
873	 60.92	-1	956610..957044	+	144	148822064	-	TBFG_10873	-	hypothetical protein
874	 61.60	-1	957072..957545	+	157	148822065	-	TBFG_10874	-	hypothetical protein
875	 67.92	0	957542..958735	-	397	148822066	-	TBFG_10875	-	aminotransferase
876	 66.67	0	958865..960103	+	412	148822067	-	TBFG_10876	-	acetyl-CoA acetyltransferase
877	 65.79	0	960108..962270	+	720	148822068	-	TBFG_10877	-	fatty acid oxidation protein fadB
878	 64.46	0	962338..963966	-	542	148822069	-	TBFG_10878	-	DNA helicase ercc3
879	 68.74	0	964157..966427	-	756	148822071	-	TBFG_10879	-	hypothetical protein
880	 59.93	-1	966414..966695	+	93	148822070	-	TBFG_10880	-	hypothetical protein
881	 65.08	0	966705..967208	+	167	148822072	moaC	TBFG_10881	-	molybdenum cofactor biosynthesis protein C
882	 66.25	0	967205..967687	+	160	148822073	-	TBFG_10882	-	molybdopterin biosynthesis protein mog
883	 67.14	0	967684..968109	+	141	148822074	-	TBFG_10883	-	molybdenum cofactor biosynthesis protein E2 moaE2
884	 72.96	+2	968127..969350	-	407	148822075	-	TBFG_10884	-	resuscitation-promoting factor rpfA
885	 65.59	0	969798..970076	-	92	148822076	-	TBFG_10885	-	molybdenum cofactor biosynthesis protein D 2 moaD2
886	 69.71	+1	970080..971162	-	360	148822077	moaA	TBFG_10886	-	molybdenum cofactor biosynthesis protein A
887	 61.79	-1	971159..971548	-	129	148822078	-	TBFG_10887	-	hypothetical protein
888	 67.15	0	971704..972120	+	138	148822079	-	TBFG_10888	-	cold shock protein B cspB
889	 75.08	+2	972239..974068	-	609	148822080	-	TBFG_10889	-	PE-PGRS family protein
890	 63.03	0	974329..976281	+	650	148822081	-	TBFG_10890	-	acyl-CoA dehydrogenase fadE10
891	 70.46	+1	976370..977530	-	386	148822082	-	TBFG_10891	-	hypothetical protein
892	 64.83	0	977630..978118	-	162	148822083	-	TBFG_10892	-	hypothetical protein
893	 65.88	0	978115..979761	-	548	148822084	-	TBFG_10893	-	transmembrane protein
894	 67.55	0	979899..980687	+	262	148822085	-	TBFG_10894	-	hypothetical protein
895	 64.14	0	980682..982028	-	448	148822086	-	TBFG_10895	-	PPE family protein
896	 67.75	0	982306..982581	-	91	148822087	-	TBFG_10896	-	transmembrane protein
897	 66.90	0	982759..983190	+	143	148822088	-	TBFG_10897	-	MarR family transcriptional regulator
898	 66.21	0	983187..984053	+	288	148822089	-	TBFG_10898	-	rRNA methyltransferase
899	 69.82	+1	984050..984334	+	94	148822090	-	TBFG_10899	-	hypothetical protein
900	 68.64	0	984331..985092	-	253	148822091	-	TBFG_10900	-	hypothetical protein
901	 65.78	0	985249..986379	-	376	148822092	-	TBFG_10901	-	phosphoserine aminotransferase
902	 63.44	0	986587..987609	+	340	148822093	-	TBFG_10902	-	hypothetical protein
903	 67.77	0	987628..989355	+	575	148822094	-	TBFG_10903	-	NADPH:adrenodoxin oxidoreductase fprB
904	 64.13	0	989338..989850	-	170	148822095	-	TBFG_10904	-	hypothetical protein
905	 61.80	-1	990094..990360	+	88	148822096	-	TBFG_10905	-	hypothetical protein
906	 60.00	-1	990499..990648	+	49	148822097	-	TBFG_10906	-	hypothetical protein
907	 63.14	0	991028..992530	+	500	148822098	-	TBFG_10907	-	hypothetical protein
908	 68.63	0	992565..993686	-	373	148822099	-	TBFG_10908	-	citrate synthase 2
909	 64.74	0	993773..996421	-	882	148822100	-	TBFG_10909	-	LuxR family transcriptional regulator
910	 60.14	-1	996423..997280	-	285	148822101	-	TBFG_10910	-	transcriptional regulator
911	 58.82	-1	997636..999165	+	509	148822102	-	TBFG_10911	-	monooxygenase
912	 60.63	-1	999143..1000120	-	325	148822103	-	TBFG_10912	-	hypothetical protein
913	 60.74	-1	1000349..1001530	+	393	148822104	-	TBFG_10913	-	LuxR family transcriptional regulator
914	 67.26	0	1001607..1003124	+	505	148822105	-	TBFG_10914	-	hypothetical protein
915	 62.42	0	1003297..1004592	+	431	148822106	gltA	TBFG_10915	-	type II citrate synthase
916	 68.28	0	1004633..1006240	-	535	148822107	-	TBFG_10916	-	oxidoreductase
917	 66.29	0	1006266..1006529	-	87	148822108	-	TBFG_10917	-	hypothetical protein
918	 60.75	-1	1006637..1007617	+	326	148822109	-	TBFG_10918	-	outer membrane protein A ompA
919	 67.42	0	1007782..1008309	+	175	148822110	-	TBFG_10919	-	hypothetical protein
920	 68.53	0	1008326..1009666	-	446	148822111	-	TBFG_10920	-	two component system sensor histidine kinase prrB
921	 66.81	0	1009677..1010387	-	236	148822112	-	TBFG_10921	-	two component system response transcriptional regulatory protein prrA
922	 69.42	+1	1010518..1012005	-	495	148822113	-	TBFG_10922	-	acetyl-CoA carboxylase carboxyl transferase beta subunit accD3
923	 64.75	0	1012032..1012763	+	243	148822114	-	TBFG_10923	-	enoyl-CoA hydratase
924	 68.45	0	1012769..1013887	+	372	148822115	-	TBFG_10924	-	hypothetical protein
925	 63.65	0	1013872..1015560	+	562	148822116	-	TBFG_10925	-	hypothetical protein
926	 63.53	0	1015557..1017950	+	797	148822117	-	TBFG_10926	-	metal cation transporter P-type ATPase ctpE
927	 56.67	-2	1018507..1018686	+	59	148822118	-	TBFG_10927	-	hypothetical protein
928	 62.07	-1	1018692..1019126	+	144	148822119	-	TBFG_10928	-	hypothetical protein
929	 63.44	0	1019224..1019997	+	257	148822120	-	TBFG_10929	-	hypothetical protein
930	 67.56	0	1020062..1020511	+	149	148822121	-	TBFG_10930	-	transmembrane protein
931	 60.90	-1	1021043..1022551	-	502	148822122	-	TBFG_10931	-	dioxygenase
932	 67.23	0	1022553..1023791	-	412	148822123	-	TBFG_10932	-	acetyl-CoA acetyltransferase
933	 69.50	+1	1023884..1025155	-	423	148822124	-	TBFG_10933	-	PPE family protein
934	 66.33	0	1025170..1025469	-	99	148822125	-	TBFG_10934	-	PE family protein
935	 61.56	-1	1025913..1027694	+	593	148822126	-	TBFG_10935	-	glycine betaine transport integral membrane protein betP
936	 66.46	0	1028037..1028513	+	158	148822127	-	TBFG_10936	-	hypothetical protein
937	 63.47	0	1028510..1029010	+	166	148822128	-	TBFG_10937	-	hypothetical protein
938	 63.48	0	1029323..1030642	-	439	148822129	-	TBFG_10938	-	transposase
939	 67.35	0	1030930..1031511	+	193	148822130	-	TBFG_10939	-	resolvase
940	 67.27	0	1031511..1033163	+	550	148822131	-	TBFG_10940	-	transposase
941	 68.92	+1	1033339..1034403	-	354	148822132	-	TBFG_10941	-	hypothetical protein
942	 65.27	0	1034404..1035693	-	429	148822133	-	TBFG_10942	-	manganese transport protein MntH
943	 63.14	0	1035722..1036459	-	245	148822134	-	TBFG_10943	-	hypothetical protein
944	 64.53	0	1036536..1037612	-	358	148822135	-	TBFG_10944	-	hypothetical protein
945	 67.55	0	1037666..1038457	-	263	148822136	-	TBFG_10945	-	short chain dehydrogenase
946	 62.44	0	1038729..1039841	+	370	148822137	-	TBFG_10946	-	periplasmic phosphate-binding lipoprotein pstS3
947	 63.28	0	1039854..1040828	+	324	148822138	-	TBFG_10947	-	phosphate-transport system integral membrane ABC transporter pstC2
948	 63.39	0	1040825..1041739	+	304	148822139	-	TBFG_10948	-	phosphate-transport system integral membrane ABC transporter pstA1
949	 65.21	0	1041746..1043740	-	664	148822140	-	TBFG_10949	-	transmembrane serine/threonine-protein kinase D pknD
950	 61.37	-1	1043762..1044874	-	370	148822141	-	TBFG_10950	-	periplasmic phosphate-binding lipoprotein pstS2
951	 63.06	0	1045090..1045920	+	276	148822142	-	TBFG_10951	-	phosphate-transport system ATP-binding protein ABC transporter pstB
952	 64.44	0	1045941..1047065	+	374	148822143	-	TBFG_10952	-	periplasmic phosphate-binding lipoprotein pstS1
953	 65.39	0	1047125..1048141	+	338	148822144	-	TBFG_10953	-	phosphate-transport system integral membrane ABC transporter pstC1
954	 63.02	0	1048143..1049048	+	301	148822145	-	TBFG_10954	-	phosphate-transport system integral membrane ABC transporter pstA2
955	 61.92	-1	1049025..1049846	-	273	148822146	-	TBFG_10955	-	hypothetical protein
956	 65.57	0	1049962..1052241	+	759	148822147	-	TBFG_10956	-	ATP-dependent DNA ligase
957	 67.18	0	1052238..1054172	+	644	148822148	-	TBFG_10957	-	bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/cyclase/dehydrase
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.