IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
797	 70.00	+1	880189..880668	-	159	148821988	-	TBFG_10797	-	hypothetical protein
798	 63.59	0	880688..882310	-	540	148821989	-	TBFG_10798	-	multi-drug resistance integral membrane efflux protein emrB
799	 68.27	0	882508..883194	+	228	148821990	-	TBFG_10799	-	hypothetical protein
800	 64.14	0	883210..884910	+	566	148821991	-	TBFG_10800	-	putative FAD-binding dehydrogenase
801	 63.69	0	884945..885583	-	212	148821993	-	TBFG_10801	-	hypothetical protein
802	 67.29	0	885329..886288	+	319	148821992	-	TBFG_10802	-	hypothetical protein
803	 60.83	-1	886394..886633	+	79	148821994	-	TBFG_10803	-	phosphoribosylformylglycinamidine synthase subunit PurS
804	 65.93	0	886630..887304	+	224	148821995	-	TBFG_10804	-	phosphoribosylformylglycinamidine synthase subunit I
805	 64.67	0	887321..887920	-	199	148821996	-	TBFG_10805	-	hypothetical protein
806	 64.88	0	887942..888670	-	242	148821997	-	TBFG_10806	-	hypothetical protein
807	 64.46	0	888667..889710	-	347	148821998	-	TBFG_10807	-	hypothetical protein
808	 64.20	0	889707..890516	-	269	148821999	-	TBFG_10808	-	GntR family transcriptional regulator
809	 66.34	0	890589..890894	+	101	148822000	-	TBFG_10809	-	hypothetical protein
810	 67.40	0	891007..892506	-	499	148822001	-	TBFG_10810	-	oxidoreductase
811	 61.64	-1	892842..893060	+	72	148822002	-	TBFG_10811	-	transposase
812	 67.43	0	893082..893993	+	303	148822003	-	TBFG_10812	-	IS1547 transposase
813	 62.78	0	893983..894780	-	265	148822004	-	TBFG_10813	-	29 kDa antigen cfp29
814	 62.20	0	894777..895784	-	335	148822005	-	TBFG_10814	-	hypothetical protein
815	 69.12	+1	895829..897130	+	433	148822006	-	TBFG_10815	-	putative aminopeptidase 2
816	 64.37	0	897142..897489	+	115	148822007	-	TBFG_10816	-	hypothetical protein
817	 63.62	0	897483..898139	-	218	148822008	-	TBFG_10817	-	hypothetical protein
818	 67.68	0	898331..900595	+	754	148822009	-	TBFG_10818	-	phosphoribosylformylglycinamidine synthase II
819	 71.59	+1	900592..901221	+	209	148822010	-	TBFG_10819	-	hypothetical protein
820	 63.11	0	901342..902298	+	318	148822011	-	TBFG_10820	-	hypothetical protein
821	 60.60	-1	902243..903841	-	532	148822012	-	TBFG_10821	-	UDP-glucose-4-epimerase cpsY
822	 70.26	+1	904146..904535	+	129	148822013	-	TBFG_10822	-	hypothetical protein
823	 67.11	0	904622..906205	+	527	148822014	-	TBFG_10823	-	amidophosphoribosyltransferase
824	 65.11	0	906236..907330	+	364	148822015	-	TBFG_10824	-	phosphoribosylaminoimidazole synthetase
825	 63.93	0	907416..907598	-	60	148822016	-	TBFG_10825	-	hypothetical protein
826	 68.02	0	907745..908851	-	368	148822017	-	TBFG_10826	-	hypothetical protein
827	 66.44	0	908916..909803	+	295	148822018	-	TBFG_10827	-	4-amino-4-deoxychorismate lyase
828	 67.55	0	909849..910529	-	226	148822019	-	TBFG_10828	-	hypothetical protein
829	 68.65	0	910692..910994	-	100	148822020	-	TBFG_10829	-	hypothetical protein
830	 61.75	-1	910996..911829	-	277	148822021	-	TBFG_10830	-	thiosulfate sulfurtransferase cysA2
831	 67.61	0	912122..912544	-	140	148822022	-	TBFG_10831	-	thioredoxin thiX
832	 64.58	0	912541..913353	-	270	148822023	-	TBFG_10832	-	hypothetical protein
833	 67.58	0	913483..914250	+	255	148822024	-	TBFG_10833	-	transcriptional regulatory protein
834	 68.57	0	914247..915194	+	315	148822025	-	TBFG_10834	-	hypothetical protein
835	 61.65	-1	915237..916013	+	258	148822026	-	TBFG_10835	-	phosphate-transport system ATP-binding protein ABC transporter phoT
836	 62.62	0	916069..916710	-	213	148822027	-	TBFG_10836	-	phosphate-transport system transcriptional regulatory protein phoY2
837	 65.30	0	916768..918822	-	684	148822028	-	TBFG_10837	-	hypothetical protein
838	 67.18	0	918988..920157	-	389	148822029	-	TBFG_10838	-	transcriptional regulator
839	 61.65	-1	920245..921261	-	338	148822030	-	TBFG_10839	-	acyl-[acyl-carrier protein] desaturase desA1
840	 64.64	0	921423..922064	-	213	148822031	-	TBFG_10840	-	hypothetical protein
841	 66.19	0	922145..923200	+	351	148822032	-	TBFG_10841	-	hypothetical protein
842	 64.38	0	923252..923644	-	130	148822033	-	TBFG_10842	-	transcriptional regulator
843	 63.83	0	923702..924124	-	140	148822035	-	TBFG_10843	-	deaminase
844	 65.98	0	924086..924376	+	96	148822034	-	TBFG_10844	-	transposase
845	 63.13	0	924481..925386	+	301	148822036	-	TBFG_10845	-	hypothetical protein
846	 60.42	-1	925405..926220	-	271	148822037	-	TBFG_10846	-	hypothetical protein
847	 72.22	+1	927462..927875	+	137	148822038	-	TBFG_10847	-	PE-PGRS family protein
848	 81.22	+2	927872..930076	+	734	148822039	-	TBFG_10848	-	PE-PGRS family protein
849	 76.97	+2	930303..932942	-	879	148822040	-	TBFG_10849	-	PE-PGRS family protein
850	 61.86	-1	933410..934054	+	214	148822041	-	TBFG_10850	-	lipoprotein lpqQ
851	 59.78	-1	934035..934586	-	183	148822042	-	TBFG_10851	-	hypothetical protein
852	 63.84	0	934704..935588	-	294	148822043	-	TBFG_10852	-	transposase
853	 65.75	0	935639..935965	-	108	148822044	-	TBFG_10853	-	transposase
854	 67.60	0	936094..936840	-	248	148822045	-	TBFG_10854	-	hypothetical protein
855	 65.21	0	936818..937846	-	342	148822046	-	TBFG_10855	-	hypothetical protein
856	 68.09	0	938535..939305	+	256	148822047	-	TBFG_10856	-	lipoprotein lpqR
857	 65.93	0	939392..940204	+	270	148822048	-	TBFG_10857	-	hypothetical protein
858	 60.98	-1	940272..941132	-	286	148822049	-	TBFG_10858	-	proline iminopeptidase pip
859	 67.34	0	941891..943219	+	442	148822050	-	TBFG_10859	-	integral membrane protein
860	 64.58	0	943203..944207	+	334	148822051	-	TBFG_10860	-	dehydrogenase
861	 67.74	0	944271..944921	-	216	148822052	-	TBFG_10861	-	nitrate/nitrite response transcriptional regulatory protein narL
862	 62.75	0	945005..946282	+	425	148822053	-	TBFG_10862	-	two component sensor kinase
863	 64.82	0	946495..948009	-	504	148822054	-	TBFG_10863	-	oxidase
864	 69.54	+1	948134..948550	+	138	148822055	-	TBFG_10864	-	lipoprotein lpqS
865	 65.50	0	948753..949871	+	372	148822056	-	TBFG_10865	-	cysteine synthase A cysK2
866	 63.81	0	949871..951130	+	419	148822057	-	TBFG_10866	-	integral membrane transport protein
867	 61.26	-1	951127..951459	+	110	148822058	-	TBFG_10867	-	transposase
868	 66.06	0	951456..952283	-	275	148822059	-	TBFG_10868	-	short chain dehydrogenase
869	 61.65	-1	952374..953210	+	278	148822060	-	TBFG_10869	-	fatty-acid-CoA ligase fadD16
870	 66.07	0	953251..954933	-	560	148822061	-	TBFG_10870	-	pyruvate or indole-3-pyruvate decarboxylase pdc
871	 59.23	-1	954998..955441	+	147	148822062	-	TBFG_10871	-	hypothetical protein
872	 66.76	0	955447..956526	+	359	148822063	-	TBFG_10872	-	fatty-acid-CoA racemase far
873	 60.92	-1	956610..957044	+	144	148822064	-	TBFG_10873	-	hypothetical protein
874	 61.60	-1	957072..957545	+	157	148822065	-	TBFG_10874	-	hypothetical protein
875	 67.92	0	957542..958735	-	397	148822066	-	TBFG_10875	-	aminotransferase
876	 66.67	0	958865..960103	+	412	148822067	-	TBFG_10876	-	acetyl-CoA acetyltransferase
877	 65.79	0	960108..962270	+	720	148822068	-	TBFG_10877	-	fatty acid oxidation protein fadB
878	 64.46	0	962338..963966	-	542	148822069	-	TBFG_10878	-	DNA helicase ercc3
879	 68.74	0	964157..966427	-	756	148822071	-	TBFG_10879	-	hypothetical protein
880	 59.93	-1	966414..966695	+	93	148822070	-	TBFG_10880	-	hypothetical protein
881	 65.08	0	966705..967208	+	167	148822072	moaC	TBFG_10881	-	molybdenum cofactor biosynthesis protein C
882	 66.25	0	967205..967687	+	160	148822073	-	TBFG_10882	-	molybdopterin biosynthesis protein mog
883	 67.14	0	967684..968109	+	141	148822074	-	TBFG_10883	-	molybdenum cofactor biosynthesis protein E2 moaE2
884	 72.96	+2	968127..969350	-	407	148822075	-	TBFG_10884	-	resuscitation-promoting factor rpfA
885	 65.59	0	969798..970076	-	92	148822076	-	TBFG_10885	-	molybdenum cofactor biosynthesis protein D 2 moaD2
886	 69.71	+1	970080..971162	-	360	148822077	moaA	TBFG_10886	-	molybdenum cofactor biosynthesis protein A
887	 61.79	-1	971159..971548	-	129	148822078	-	TBFG_10887	-	hypothetical protein
888	 67.15	0	971704..972120	+	138	148822079	-	TBFG_10888	-	cold shock protein B cspB
889	 75.08	+2	972239..974068	-	609	148822080	-	TBFG_10889	-	PE-PGRS family protein
890	 63.03	0	974329..976281	+	650	148822081	-	TBFG_10890	-	acyl-CoA dehydrogenase fadE10
891	 70.46	+1	976370..977530	-	386	148822082	-	TBFG_10891	-	hypothetical protein
892	 64.83	0	977630..978118	-	162	148822083	-	TBFG_10892	-	hypothetical protein
893	 65.88	0	978115..979761	-	548	148822084	-	TBFG_10893	-	transmembrane protein
894	 67.55	0	979899..980687	+	262	148822085	-	TBFG_10894	-	hypothetical protein
895	 64.14	0	980682..982028	-	448	148822086	-	TBFG_10895	-	PPE family protein
896	 67.75	0	982306..982581	-	91	148822087	-	TBFG_10896	-	transmembrane protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.