IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
729	 60.69	-1	815611..815928	+	105	148821920	rplX	TBFG_10729	-	50S ribosomal protein L24
730	 63.12	0	815928..816491	+	187	148821921	rplE	TBFG_10730	-	50S ribosomal protein L5
731	 65.05	0	816496..816681	+	61	148821922	rpsN	TBFG_10731	-	30S ribosomal protein S14
732	 63.16	0	816845..817243	+	132	148821923	rpsH	TBFG_10732	-	30S ribosomal protein S8
733	 61.67	-1	817267..817806	+	179	148821924	rplF	TBFG_10733	-	50S ribosomal protein L6
734	 68.29	0	817809..818177	+	122	148821925	rplR	TBFG_10734	-	50S ribosomal protein L18
735	 67.87	0	818197..818859	+	220	148821926	rpsE	TBFG_10735	-	30S ribosomal protein S5
736	 62.12	0	818862..819059	+	65	148821927	rpmD	TBFG_10736	-	50S ribosomal protein L30
737	 67.12	0	819059..819499	+	146	148821928	rplO	TBFG_10737	-	50S ribosomal protein L15
738	 66.99	0	819532..821403	+	623	148821929	-	TBFG_10738	-	protease IV sppA
739	 64.02	0	821408..822313	-	301	148821930	-	TBFG_10739	-	hypothetical protein
740	 62.68	0	822406..823509	-	367	148821931	-	TBFG_10740	-	hypothetical protein
741	 67.58	0	823712..824368	-	218	148821932	-	TBFG_10741	-	L-fuculose-phosphate aldolase
742	 69.62	+1	824365..825345	-	326	148821933	-	TBFG_10742	-	D-3-phosphoglycerate dehydrogenase serA2
743	 70.30	+1	825376..826722	+	448	148821934	-	TBFG_10743	-	D-xylulose kinase xylB
744	 65.43	0	826735..827463	+	242	148821935	-	TBFG_10744	-	hypothetical protein
745	 67.08	0	827552..828508	-	318	148821936	-	TBFG_10745	-	hypothetical protein
746	 59.65	-1	828669..829994	+	441	148821937	secY	TBFG_10746	-	preprotein translocase subunit SecY
747	 63.74	0	829991..830536	+	181	148821938	adk	TBFG_10747	-	adenylate kinase
748	 68.41	0	830539..831339	+	266	148821939	-	TBFG_10748	-	methionine aminopeptidase
749	 66.48	0	831412..831945	+	177	148821940	-	TBFG_10749	-	RNA polymerase sigma factor SigL
750	 68.26	0	832009..832761	+	250	148821941	-	TBFG_10750	-	hypothetical protein
751	 66.47	0	833076..833573	+	165	148821942	-	TBFG_10751	-	transcriptional regulator
752	 71.40	+1	833931..834479	+	182	148821943	-	TBFG_10752	-	hypothetical protein
753	 64.18	0	834727..835530	+	267	148821944	-	TBFG_10753	-	hypothetical protein
754	 63.55	0	835564..836172	+	202	148821945	-	TBFG_10754	-	hypothetical protein
755	 65.08	0	836403..836717	+	104	148821946	-	TBFG_10755	-	transposase
756	 76.30	+2	836859..837377	+	172	148821947	-	TBFG_10756	-	PE-PGRS family protein
757	 62.72	0	837755..838312	-	185	148821948	-	TBFG_10757	-	hypothetical protein
758	 64.89	0	838309..838815	-	168	148821949	-	TBFG_10758	-	transcriptional regulator
759	 68.56	0	839023..839550	+	175	148821950	-	TBFG_10759	-	hypothetical protein
760	 79.21	+2	839570..841921	+	783	148821951	-	TBFG_10760	-	PE-PGRS family protein
761	 78.97	+2	842320..844725	+	801	148821952	-	TBFG_10761	-	PE-PGRS family protein
762	 67.44	0	844816..845073	+	85	148821953	-	TBFG_10762	-	hypothetical protein
763	 64.10	0	845097..845525	+	142	148821954	-	TBFG_10763	-	hypothetical protein
764	 65.45	0	845902..846147	+	81	148821955	-	TBFG_10764	-	hypothetical protein
765	 68.81	0	846216..847100	-	294	148821956	-	TBFG_10765	-	3-hydroxyisobutyrate dehydrogenase mmsB
766	 66.84	0	847111..848283	-	390	148821957	-	TBFG_10766	-	acyl-CoA dehydrogenase fadE9
767	 67.06	0	848290..849822	-	510	148821958	-	TBFG_10767	-	methylmalonate-semialdehyde dehydrogenase mmsA
768	 68.49	0	850028..851782	+	584	148821959	-	TBFG_10768	-	PE-PGRS family protein
769	 58.67	-2	851972..853909	-	645	148821960	-	TBFG_10769	-	PPE family protein
770	 58.06	-2	854211..854396	-	61	148821961	-	TBFG_10770	-	transposase
771	 69.15	+1	854610..855335	-	241	148821962	-	TBFG_10771	-	hypothetical protein
772	 62.63	0	855477..856220	+	247	148821963	-	TBFG_10772	-	two component system response transcriptional positive regulator phoP
773	 67.08	0	856265..857722	+	485	148821964	-	TBFG_10773	-	two component system response sensor kinase membrane associated phoR
774	 61.44	-1	857694..858095	-	133	148821965	-	TBFG_10774	-	hypothetical protein
775	 61.19	-1	858135..858554	-	139	148821966	-	TBFG_10775	-	hypothetical protein
776	 64.10	0	858567..859694	-	375	148821967	-	TBFG_10776	-	zinc-type alcohol dehydrogenase NAD dependent adhB
777	 62.64	0	859793..860338	-	181	148821968	-	TBFG_10777	-	hypothetical protein
778	 64.73	0	860341..860547	-	68	148821969	-	TBFG_10778	-	ferredoxin
779	 63.35	0	860550..861905	-	451	148821970	-	TBFG_10779	-	cytochrome P450 51 cyp51
780	 67.15	0	861905..862732	-	275	148821971	-	TBFG_10780	-	short chain dehydrogenase
781	 63.69	0	862732..863940	-	402	148821972	-	TBFG_10781	-	cytochrome P450 123 cyp123
782	 67.76	0	863937..864578	-	213	148821973	-	TBFG_10782	-	hypothetical protein
783	 65.51	0	864780..866249	+	489	148821974	-	TBFG_10783	-	aldehyde dehydrogenase NAD dependent aldA
784	 61.71	-1	866280..867026	+	248	148821975	-	TBFG_10784	-	short chain dehydrogenase
785	 65.99	0	867124..868011	+	295	148821976	-	TBFG_10785	-	dehydrogenase/reductase
786	 60.88	-1	868011..868442	+	143	148821977	-	TBFG_10786	-	4-carboxymuconolactone decarboxylase
787	 67.06	0	868454..869722	+	422	148821978	-	TBFG_10787	-	phosphoribosylamine--glycine ligase
788	 64.91	0	869719..871257	-	512	148821979	-	TBFG_10788	-	bifunctional acylase ggtA: cephalosporin acylase + gamma-glutamyltranspeptidase
789	 68.97	+1	871308..872219	-	303	148821980	-	TBFG_10789	-	hypothetical protein
790	 68.27	0	872275..872898	+	207	148821981	-	TBFG_10790	-	hypothetical protein
791	 68.59	0	872852..873631	-	259	148821982	-	TBFG_10791	-	hypothetical protein
792	 65.61	0	873876..875294	+	472	148821983	-	TBFG_10792	-	adenylosuccinate lyase
793	 63.61	0	875299..876543	+	414	148821984	-	TBFG_10793	-	cytochrome P450 126 cyp126
794	 70.76	+1	876540..877223	-	227	148821986	-	TBFG_10794	-	transmembrane protein
795	 63.76	0	877211..878104	+	297	148821985	-	TBFG_10795	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
796	 61.90	-1	878101..880260	+	719	148821987	-	TBFG_10796	-	protease II ptrBb (oligopeptidase B)
797	 70.00	+1	880189..880668	-	159	148821988	-	TBFG_10797	-	hypothetical protein
798	 63.59	0	880688..882310	-	540	148821989	-	TBFG_10798	-	multi-drug resistance integral membrane efflux protein emrB
799	 68.27	0	882508..883194	+	228	148821990	-	TBFG_10799	-	hypothetical protein
800	 64.14	0	883210..884910	+	566	148821991	-	TBFG_10800	-	putative FAD-binding dehydrogenase
801	 63.69	0	884945..885583	-	212	148821993	-	TBFG_10801	-	hypothetical protein
802	 67.29	0	885329..886288	+	319	148821992	-	TBFG_10802	-	hypothetical protein
803	 60.83	-1	886394..886633	+	79	148821994	-	TBFG_10803	-	phosphoribosylformylglycinamidine synthase subunit PurS
804	 65.93	0	886630..887304	+	224	148821995	-	TBFG_10804	-	phosphoribosylformylglycinamidine synthase subunit I
805	 64.67	0	887321..887920	-	199	148821996	-	TBFG_10805	-	hypothetical protein
806	 64.88	0	887942..888670	-	242	148821997	-	TBFG_10806	-	hypothetical protein
807	 64.46	0	888667..889710	-	347	148821998	-	TBFG_10807	-	hypothetical protein
808	 64.20	0	889707..890516	-	269	148821999	-	TBFG_10808	-	GntR family transcriptional regulator
809	 66.34	0	890589..890894	+	101	148822000	-	TBFG_10809	-	hypothetical protein
810	 67.40	0	891007..892506	-	499	148822001	-	TBFG_10810	-	oxidoreductase
811	 61.64	-1	892842..893060	+	72	148822002	-	TBFG_10811	-	transposase
812	 67.43	0	893082..893993	+	303	148822003	-	TBFG_10812	-	IS1547 transposase
813	 62.78	0	893983..894780	-	265	148822004	-	TBFG_10813	-	29 kDa antigen cfp29
814	 62.20	0	894777..895784	-	335	148822005	-	TBFG_10814	-	hypothetical protein
815	 69.12	+1	895829..897130	+	433	148822006	-	TBFG_10815	-	putative aminopeptidase 2
816	 64.37	0	897142..897489	+	115	148822007	-	TBFG_10816	-	hypothetical protein
817	 63.62	0	897483..898139	-	218	148822008	-	TBFG_10817	-	hypothetical protein
818	 67.68	0	898331..900595	+	754	148822009	-	TBFG_10818	-	phosphoribosylformylglycinamidine synthase II
819	 71.59	+1	900592..901221	+	209	148822010	-	TBFG_10819	-	hypothetical protein
820	 63.11	0	901342..902298	+	318	148822011	-	TBFG_10820	-	hypothetical protein
821	 60.60	-1	902243..903841	-	532	148822012	-	TBFG_10821	-	UDP-glucose-4-epimerase cpsY
822	 70.26	+1	904146..904535	+	129	148822013	-	TBFG_10822	-	hypothetical protein
823	 67.11	0	904622..906205	+	527	148822014	-	TBFG_10823	-	amidophosphoribosyltransferase
824	 65.11	0	906236..907330	+	364	148822015	-	TBFG_10824	-	phosphoribosylaminoimidazole synthetase
825	 63.93	0	907416..907598	-	60	148822016	-	TBFG_10825	-	hypothetical protein
826	 68.02	0	907745..908851	-	368	148822017	-	TBFG_10826	-	hypothetical protein
827	 66.44	0	908916..909803	+	295	148822018	-	TBFG_10827	-	4-amino-4-deoxychorismate lyase
828	 67.55	0	909849..910529	-	226	148822019	-	TBFG_10828	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.