IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
648	 59.75	-1	735158..735634	+	158	148821839	-	TBFG_10648	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadA
649	 62.47	0	735621..736049	+	142	148821840	-	TBFG_10649	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadB
650	 60.48	-1	736053..736553	+	166	148821841	-	TBFG_10650	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadC
651	 64.61	0	736965..737450	+	161	148821842	secE	TBFG_10651	-	preprotein translocase subunit SecE
652	 63.88	0	737482..738198	+	238	148821843	nusG	TBFG_10652	-	transcription antitermination protein NusG
653	 63.17	0	738250..738678	+	142	148821844	rplK	TBFG_10653	-	50S ribosomal protein L11
654	 64.69	0	738745..739452	+	235	148821845	rplA	TBFG_10654	-	50S ribosomal protein L1
655	 60.31	-1	739526..740422	-	298	148821846	-	TBFG_10655	-	methoxy mycolic acid synthase 4 mmaA4
656	 59.28	-1	740496..741389	-	297	148821847	-	TBFG_10656	-	methoxy mycolic acid synthase 3 mmaA3
657	 62.50	0	741525..742436	-	303	148821848	-	TBFG_10657	-	methoxy mycolic acid synthase 2 mmaA2
658	 60.04	-1	742555..743445	-	296	148821849	-	TBFG_10658	-	methoxy mycolic acid synthase 1 mmaA1
659	 67.88	0	743462..744367	-	301	148821850	-	TBFG_10659	-	lipase/esterase lipG
660	 65.85	0	744379..745845	-	488	148821851	-	TBFG_10660	-	hypothetical protein
661	 71.69	+1	745931..750127	+	1398	148821852	-	TBFG_10661	-	alpha-mannosidase
662	 77.04	+2	750124..750798	+	224	148821853	-	TBFG_10662	-	malonyl CoA-acyl carrier protein transacylase fabD2
663	 75.14	+2	750798..751706	+	302	148821854	-	TBFG_10663	-	sugar kinase
664	 67.04	0	752037..752573	+	178	148821855	rplJ	TBFG_10664	-	50S ribosomal protein L10
665	 67.43	0	752610..753002	+	130	148821856	rplL	TBFG_10665	-	50S ribosomal protein L7/L12
666	 67.10	0	752995..753690	-	231	148821857	-	TBFG_10666	-	TetR family transcriptional regulator
667	 66.80	0	753761..755266	+	501	148821858	-	TBFG_10667	-	dioxygenase
668	 63.15	0	755278..756357	+	359	148821859	-	TBFG_10668	-	ribonucleotide transport ATP-binding protein ABC transporter mkl
669	 65.62	0	756745..757128	-	127	148821860	-	TBFG_10669	-	hypothetical protein
670	 64.74	0	757223..757378	-	51	148821861	-	TBFG_10670	-	hypothetical protein
671	 65.41	0	757454..758170	-	238	148821862	-	TBFG_10671	-	integral membrane protein
672	 63.43	0	758446..758754	-	102	148821863	-	TBFG_10672	-	hypothetical protein
673	 71.54	+1	758741..758986	-	81	148821864	-	TBFG_10673	-	hypothetical protein
674	 68.26	0	759096..759533	-	145	148821865	-	TBFG_10674	-	hypothetical protein
675	 68.29	0	759530..759898	-	122	148821866	-	TBFG_10675	-	hypothetical protein
676	 64.26	0	759898..762261	+	787	148821867	-	TBFG_10676	-	arylsulfatase atsD (aryl-sulfate sulphohydrolase)
677	 65.57	0	762293..762565	+	90	148821868	-	TBFG_10677	-	hypothetical protein
678	 64.90	0	762562..762900	+	112	148821869	-	TBFG_10678	-	hypothetical protein
679	 63.22	0	762897..763070	+	57	148821870	-	TBFG_10679	-	hypothetical protein
680	 60.61	-1	763055..763285	+	76	148821871	-	TBFG_10680	-	hypothetical protein
681	 64.26	0	763550..767086	+	1178	148821872	rpoB	TBFG_10681	-	DNA-directed RNA polymerase subunit beta
682	 65.17	0	767131..771081	+	1316	148821873	-	TBFG_10682	-	DNA-directed RNA polymerase subunit beta'
683	 65.20	0	771445..773358	-	637	148821874	-	TBFG_10683	-	hydrolase
684	 66.14	0	773553..774311	+	252	148821875	-	TBFG_10684	-	endonuclease IV
685	 66.07	0	774343..775185	+	280	148821876	-	TBFG_10685	-	lipoprotein lpqP
686	 66.91	0	775245..776873	+	542	148821877	-	TBFG_10686	-	acyl-CoA dehydrogenase fadE8
687	 67.20	0	776884..777822	+	312	148821878	-	TBFG_10687	-	enoyl-CoA hydratase
688	 66.80	0	777825..778547	+	240	148821879	-	TBFG_10688	-	hypothetical protein
689	 69.70	+1	778544..779335	+	263	148821880	-	TBFG_10689	-	enoyl-CoA hydratase
690	 63.52	0	779347..782241	-	964	148821881	-	TBFG_10690	-	transmembrane transport protein mmpL5
691	 61.54	-1	782238..782666	-	142	148821882	-	TBFG_10691	-	membrane protein mmpS5
692	 65.26	0	782751..783248	+	165	148821883	-	TBFG_10692	-	hypothetical protein
693	 64.46	0	783304..783801	-	165	148821884	-	TBFG_10693	-	threonine rich protein
694	 63.20	0	783803..784177	-	124	148821885	-	TBFG_10694	-	transmembrane protein
695	 66.21	0	784416..785072	+	218	148821886	-	TBFG_10695	-	TetR family transcriptional regulator
696	 62.67	0	785321..785695	+	124	148821887	rpsL	TBFG_10696	-	30S ribosomal protein S12
697	 63.48	0	785695..786165	+	156	148821888	-	TBFG_10697	-	30S ribosomal protein S7
698	 62.35	0	786246..788351	+	701	148821889	-	TBFG_10698	-	elongation factor G
699	 64.15	0	788582..789772	+	396	148821890	-	TBFG_10699	-	elongation factor Tu
700	 61.03	-1	789910..790707	+	265	148821891	-	TBFG_10700	-	hypothetical protein
701	 64.13	0	790860..791687	+	275	148821892	fabG	TBFG_10701	-	3-ketoacyl-(acyl-carrier-protein) reductase
702	 64.86	0	791701..792921	+	406	148821893	-	TBFG_10702	-	ferredoxin reductase
703	 73.33	+2	792918..793172	-	84	148821894	-	TBFG_10703	-	hypothetical protein
704	 67.24	0	793785..794834	-	349	148821895	-	TBFG_10704	-	hypothetical protein
705	 60.47	-1	794831..795427	-	198	148821896	-	TBFG_10705	-	transcriptional regulator
706	 63.64	0	795592..795921	+	109	148821897	-	TBFG_10706	-	hypothetical protein
707	 65.99	0	795918..797093	+	391	148821898	-	TBFG_10707	-	coenzyme PQQ synthesis protein E pqqE
708	 65.32	0	797096..798286	+	396	148821899	-	TBFG_10708	-	L-lactate dehydrogenase (cytochrome) lldD1
709	 68.78	0	798476..799231	+	251	148821900	-	TBFG_10709	-	hypothetical protein
710	 66.31	0	799280..800692	+	470	148821901	-	TBFG_10710	-	membrane sugar transferase
711	 63.61	0	800694..802133	+	479	148821902	-	TBFG_10711	-	dehydrogenase
712	 64.38	0	802594..803205	+	203	148821903	-	TBFG_10712	-	hypothetical protein
713	 65.74	0	802921..803568	-	215	148821904	-	TBFG_10713	-	hypothetical protein
714	 60.78	-1	804248..804553	+	101	148821905	rpsJ	TBFG_10714	-	30S ribosomal protein S10
715	 64.07	0	804570..805223	+	217	148821906	rplC	TBFG_10715	-	50S ribosomal protein L3
716	 67.41	0	805223..805894	+	223	148821907	rplD	TBFG_10716	-	50S ribosomal protein L4
717	 62.05	-1	805894..806196	+	100	148821908	rplW	TBFG_10717	-	50S ribosomal protein L23
718	 65.12	0	806397..807239	+	280	148821909	rplB	TBFG_10718	-	50S ribosomal protein L2
719	 58.16	-2	807280..807561	+	93	148821910	rpsS	TBFG_10719	-	30S ribosomal protein S19
720	 68.52	0	807558..808151	+	197	148821911	rplV	TBFG_10720	-	50S ribosomal protein L22
721	 67.39	0	808151..808975	+	274	148821912	rpsC	TBFG_10721	-	30S ribosomal protein S3
722	 61.39	-1	808979..809395	+	138	148821913	rplP	TBFG_10722	-	50S ribosomal protein L16
723	 61.97	-1	809395..809628	+	77	148821914	-	TBFG_10723	-	50S ribosomal protein L29
724	 62.99	0	809628..810035	+	135	148821915	rpsQ	TBFG_10724	-	30S ribosomal protein S17
725	 63.03	0	810204..812567	+	787	148821916	-	TBFG_10725	-	arylsulfatase atsA (aryl-sulfate sulphohydrolase)
726	 67.00	0	812615..813514	+	299	148821917	-	TBFG_10726	-	hypothetical protein
727	 61.89	-1	813815..814756	+	313	148821918	-	TBFG_10727	-	transmembrane protein
728	 63.41	0	815242..815610	+	122	148821919	rplN	TBFG_10728	-	50S ribosomal protein L14
729	 60.69	-1	815611..815928	+	105	148821920	rplX	TBFG_10729	-	50S ribosomal protein L24
730	 63.12	0	815928..816491	+	187	148821921	rplE	TBFG_10730	-	50S ribosomal protein L5
731	 65.05	0	816496..816681	+	61	148821922	rpsN	TBFG_10731	-	30S ribosomal protein S14
732	 63.16	0	816845..817243	+	132	148821923	rpsH	TBFG_10732	-	30S ribosomal protein S8
733	 61.67	-1	817267..817806	+	179	148821924	rplF	TBFG_10733	-	50S ribosomal protein L6
734	 68.29	0	817809..818177	+	122	148821925	rplR	TBFG_10734	-	50S ribosomal protein L18
735	 67.87	0	818197..818859	+	220	148821926	rpsE	TBFG_10735	-	30S ribosomal protein S5
736	 62.12	0	818862..819059	+	65	148821927	rpmD	TBFG_10736	-	50S ribosomal protein L30
737	 67.12	0	819059..819499	+	146	148821928	rplO	TBFG_10737	-	50S ribosomal protein L15
738	 66.99	0	819532..821403	+	623	148821929	-	TBFG_10738	-	protease IV sppA
739	 64.02	0	821408..822313	-	301	148821930	-	TBFG_10739	-	hypothetical protein
740	 62.68	0	822406..823509	-	367	148821931	-	TBFG_10740	-	hypothetical protein
741	 67.58	0	823712..824368	-	218	148821932	-	TBFG_10741	-	L-fuculose-phosphate aldolase
742	 69.62	+1	824365..825345	-	326	148821933	-	TBFG_10742	-	D-3-phosphoglycerate dehydrogenase serA2
743	 70.30	+1	825376..826722	+	448	148821934	-	TBFG_10743	-	D-xylulose kinase xylB
744	 65.43	0	826735..827463	+	242	148821935	-	TBFG_10744	-	hypothetical protein
745	 67.08	0	827552..828508	-	318	148821936	-	TBFG_10745	-	hypothetical protein
746	 59.65	-1	828669..829994	+	441	148821937	secY	TBFG_10746	-	preprotein translocase subunit SecY
747	 63.74	0	829991..830536	+	181	148821938	adk	TBFG_10747	-	adenylate kinase
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.