IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
593	 65.69	0	681150..681557	+	135	148821784	-	TBFG_10593	-	hypothetical protein
594	 63.90	0	681617..682303	-	228	148821785	-	TBFG_10594	-	lipoprotein lpqN
595	 64.65	0	682457..685090	+	877	148821786	-	TBFG_10595	-	hypothetical protein
596	 64.74	0	685113..687500	-	795	148821787	-	TBFG_10596	-	integral membrane protein
597	 62.79	0	687638..688360	+	240	148821788	-	TBFG_10597	-	GntR family transcriptional regulator
598	 64.66	0	688357..689154	+	265	148821789	-	TBFG_10598	-	integral membrane protein YrbE2a
599	 64.19	0	689156..690043	+	295	148821790	-	TBFG_10599	-	integral membrane protein YrbE2b
600	 60.66	-1	690049..691263	+	404	148821791	-	TBFG_10600	-	MCE-family protein mce2A
601	 62.92	0	691260..692087	+	275	148821792	-	TBFG_10601	-	MCE-family protein mce2B
602	 60.00	-1	692036..692290	+	84	148821793	-	TBFG_10602	-	MCE family-like protein
603	 65.28	0	692287..693732	+	481	148821794	-	TBFG_10603	-	MCE-family protein mce2C
604	 62.93	0	693729..695255	+	508	148821795	-	TBFG_10604	-	MCE-family protein mce2D
605	 63.52	0	695252..696460	+	402	148821796	-	TBFG_10605	-	MCE family lipoprotein LprL
606	 63.96	0	696465..698015	+	516	148821797	-	TBFG_10606	-	MCE-family protein mce2F
607	 64.12	0	698067..698459	-	130	148821798	-	TBFG_10607	-	hypothetical protein
608	 64.34	0	698456..698713	-	85	148821799	-	TBFG_10608	-	hypothetical protein
609	 67.15	0	698896..700131	-	411	148821800	-	TBFG_10609	-	hypothetical protein
610	 65.94	0	700382..700795	-	137	148821801	-	TBFG_10610	-	hypothetical protein
611	 61.60	-1	700792..701028	-	78	148821802	-	TBFG_10611	-	hypothetical protein
612	 69.75	+1	701132..702265	-	377	148821803	-	TBFG_10612	-	two component sensor kinase
613	 69.16	+1	702266..703027	-	253	148821804	-	TBFG_10613	-	two component system DNA binding transcriptional regulatory protein tcrA
614	 74.68	+2	703084..703395	+	103	148821805	-	TBFG_10614	-	hypothetical protein
615	 69.61	+1	703467..704417	+	316	148821806	-	TBFG_10615	-	lipoprotein lpqO
616	 63.88	0	704634..705242	+	202	148821807	-	TBFG_10616	-	resolvase
617	 66.53	0	705244..705987	+	247	148821808	-	TBFG_10617	-	transposase
618	 65.61	0	705957..706427	+	156	148821809	-	TBFG_10618	-	hypothetical protein
619	 63.82	0	706472..706717	+	81	148821810	-	TBFG_10619	-	hypothetical protein
620	 64.93	0	706714..707115	+	133	148821811	-	TBFG_10620	-	hypothetical protein
621	 69.00	+1	707980..709137	-	385	148821812	-	TBFG_10621	-	hypothetical protein
622	 63.80	0	709189..709572	-	127	148821814	-	TBFG_10622	-	hypothetical protein
623	 71.12	+1	709552..710157	+	201	148821813	-	TBFG_10623	-	hypothetical protein
624	 71.26	+1	710176..712743	-	855	148821815	-	TBFG_10624	-	hypothetical protein
625	 66.00	0	712827..713576	+	249	148821816	-	TBFG_10625	-	hypothetical protein
626	 68.33	0	713576..713815	+	79	148821817	-	TBFG_10626	-	hypothetical protein
627	 65.17	0	713812..714078	-	88	148821818	-	TBFG_10627	-	hypothetical protein
628	 64.93	0	714234..714635	+	133	148821819	-	TBFG_10628	-	hypothetical protein
629	 70.26	+1	714764..715459	+	231	148821820	-	TBFG_10629	-	galactose-1-phosphate uridylyltransferase galTa
630	 63.27	0	715477..715947	+	156	148821821	-	TBFG_10630	-	galactose-1-phosphate uridylyltransferase galTb
631	 72.62	+2	715944..717035	+	363	148821822	-	TBFG_10631	-	galactokinase
632	 69.74	+1	717421..718494	+	357	148821823	-	TBFG_10632	-	hypothetical protein
633	 63.92	0	718598..719545	+	315	148821824	-	TBFG_10633	-	hypothetical protein
634	 69.02	+1	719638..719892	+	84	148821825	-	TBFG_10634	-	hypothetical protein
635	 64.39	0	719892..720287	+	131	148821826	-	TBFG_10635	-	hypothetical protein
636	 69.64	+1	720381..721121	-	246	148821827	-	TBFG_10636	-	transmembrane protein
637	 70.11	+1	721253..721513	+	86	148821828	-	TBFG_10637	-	hypothetical protein
638	 68.87	+1	721510..721917	+	135	148821829	-	TBFG_10638	-	hypothetical protein
639	 72.22	+1	721989..723140	-	383	148821830	-	TBFG_10639	-	hypothetical protein
640	 69.97	+1	723233..724960	-	575	148821831	-	TBFG_10640	-	exonuclease V alpha subunit recD
641	 70.17	+1	724957..728241	-	1094	148821832	-	TBFG_10641	-	exonuclease V beta subunit recB
642	 71.52	+1	728241..731534	-	1097	148821833	-	TBFG_10642	-	exonuclease V gamma subunit recC
643	 63.65	0	731811..732506	-	231	148821834	-	TBFG_10643	-	enoyl-CoA hydratase
644	 66.07	0	732555..733394	-	279	148821835	-	TBFG_10644	-	hypothetical protein
645	 61.62	-1	733548..734261	-	237	148821836	-	TBFG_10645	-	glyoxalase II
646	 61.11	-1	734341..734592	+	83	148821837	-	TBFG_10646	-	hypothetical protein
647	 58.93	-1	734940..735107	+	55	148821838	rpmG	TBFG_10647	-	50S ribosomal protein L33
648	 59.75	-1	735158..735634	+	158	148821839	-	TBFG_10648	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadA
649	 62.47	0	735621..736049	+	142	148821840	-	TBFG_10649	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadB
650	 60.48	-1	736053..736553	+	166	148821841	-	TBFG_10650	-	(3R)-hydroxyacyl-ACP dehydratase subunit HadC
651	 64.61	0	736965..737450	+	161	148821842	secE	TBFG_10651	-	preprotein translocase subunit SecE
652	 63.88	0	737482..738198	+	238	148821843	nusG	TBFG_10652	-	transcription antitermination protein NusG
653	 63.17	0	738250..738678	+	142	148821844	rplK	TBFG_10653	-	50S ribosomal protein L11
654	 64.69	0	738745..739452	+	235	148821845	rplA	TBFG_10654	-	50S ribosomal protein L1
655	 60.31	-1	739526..740422	-	298	148821846	-	TBFG_10655	-	methoxy mycolic acid synthase 4 mmaA4
656	 59.28	-1	740496..741389	-	297	148821847	-	TBFG_10656	-	methoxy mycolic acid synthase 3 mmaA3
657	 62.50	0	741525..742436	-	303	148821848	-	TBFG_10657	-	methoxy mycolic acid synthase 2 mmaA2
658	 60.04	-1	742555..743445	-	296	148821849	-	TBFG_10658	-	methoxy mycolic acid synthase 1 mmaA1
659	 67.88	0	743462..744367	-	301	148821850	-	TBFG_10659	-	lipase/esterase lipG
660	 65.85	0	744379..745845	-	488	148821851	-	TBFG_10660	-	hypothetical protein
661	 71.69	+1	745931..750127	+	1398	148821852	-	TBFG_10661	-	alpha-mannosidase
662	 77.04	+2	750124..750798	+	224	148821853	-	TBFG_10662	-	malonyl CoA-acyl carrier protein transacylase fabD2
663	 75.14	+2	750798..751706	+	302	148821854	-	TBFG_10663	-	sugar kinase
664	 67.04	0	752037..752573	+	178	148821855	rplJ	TBFG_10664	-	50S ribosomal protein L10
665	 67.43	0	752610..753002	+	130	148821856	rplL	TBFG_10665	-	50S ribosomal protein L7/L12
666	 67.10	0	752995..753690	-	231	148821857	-	TBFG_10666	-	TetR family transcriptional regulator
667	 66.80	0	753761..755266	+	501	148821858	-	TBFG_10667	-	dioxygenase
668	 63.15	0	755278..756357	+	359	148821859	-	TBFG_10668	-	ribonucleotide transport ATP-binding protein ABC transporter mkl
669	 65.62	0	756745..757128	-	127	148821860	-	TBFG_10669	-	hypothetical protein
670	 64.74	0	757223..757378	-	51	148821861	-	TBFG_10670	-	hypothetical protein
671	 65.41	0	757454..758170	-	238	148821862	-	TBFG_10671	-	integral membrane protein
672	 63.43	0	758446..758754	-	102	148821863	-	TBFG_10672	-	hypothetical protein
673	 71.54	+1	758741..758986	-	81	148821864	-	TBFG_10673	-	hypothetical protein
674	 68.26	0	759096..759533	-	145	148821865	-	TBFG_10674	-	hypothetical protein
675	 68.29	0	759530..759898	-	122	148821866	-	TBFG_10675	-	hypothetical protein
676	 64.26	0	759898..762261	+	787	148821867	-	TBFG_10676	-	arylsulfatase atsD (aryl-sulfate sulphohydrolase)
677	 65.57	0	762293..762565	+	90	148821868	-	TBFG_10677	-	hypothetical protein
678	 64.90	0	762562..762900	+	112	148821869	-	TBFG_10678	-	hypothetical protein
679	 63.22	0	762897..763070	+	57	148821870	-	TBFG_10679	-	hypothetical protein
680	 60.61	-1	763055..763285	+	76	148821871	-	TBFG_10680	-	hypothetical protein
681	 64.26	0	763550..767086	+	1178	148821872	rpoB	TBFG_10681	-	DNA-directed RNA polymerase subunit beta
682	 65.17	0	767131..771081	+	1316	148821873	-	TBFG_10682	-	DNA-directed RNA polymerase subunit beta'
683	 65.20	0	771445..773358	-	637	148821874	-	TBFG_10683	-	hydrolase
684	 66.14	0	773553..774311	+	252	148821875	-	TBFG_10684	-	endonuclease IV
685	 66.07	0	774343..775185	+	280	148821876	-	TBFG_10685	-	lipoprotein lpqP
686	 66.91	0	775245..776873	+	542	148821877	-	TBFG_10686	-	acyl-CoA dehydrogenase fadE8
687	 67.20	0	776884..777822	+	312	148821878	-	TBFG_10687	-	enoyl-CoA hydratase
688	 66.80	0	777825..778547	+	240	148821879	-	TBFG_10688	-	hypothetical protein
689	 69.70	+1	778544..779335	+	263	148821880	-	TBFG_10689	-	enoyl-CoA hydratase
690	 63.52	0	779347..782241	-	964	148821881	-	TBFG_10690	-	transmembrane transport protein mmpL5
691	 61.54	-1	782238..782666	-	142	148821882	-	TBFG_10691	-	membrane protein mmpS5
692	 65.26	0	782751..783248	+	165	148821883	-	TBFG_10692	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.