IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
516	 67.47	0	598609..599730	-	373	148821707	-	TBFG_10516	-	phosphoserine phosphatase serB1
517	 61.26	-1	599904..600347	+	147	148821708	-	TBFG_10517	-	membrane protein mmpS2
518	 58.10	-2	600344..603250	+	968	148821709	-	TBFG_10518	-	transmembrane transport protein mmpL2
519	 63.61	0	603243..603536	+	97	148821710	-	TBFG_10519	-	hypothetical protein
520	 66.74	0	603586..604992	+	468	148821711	hemA	TBFG_10520	-	glutamyl-tRNA reductase
521	 68.06	0	605002..605931	+	309	148821712	hemC	TBFG_10521	-	porphobilinogen deaminase
522	 70.08	+1	605964..607661	+	565	148821713	-	TBFG_10522	-	uroporphyrin-III C-methyltransferase hemD
523	 67.17	0	607747..608736	+	329	148821714	-	TBFG_10523	-	delta-aminolevulinic acid dehydratase
524	 66.48	0	608749..609297	+	182	148821715	-	TBFG_10524	-	transmembrane protein
525	 70.33	+1	609294..609593	+	99	148821716	-	TBFG_10525	-	hypothetical protein
526	 67.76	0	609740..611206	+	488	148821717	-	TBFG_10526	-	13E12 repeat-containing protein
527	 62.47	0	611203..611679	-	158	148821718	-	TBFG_10527	-	hypothetical protein
528	 64.53	0	611890..613200	+	436	148821719	-	TBFG_10528	-	membrane acyltransferase
529	 65.66	0	613332..614027	+	231	148821720	-	TBFG_10529	-	hypothetical protein
530	 68.77	0	614316..615218	-	300	148821721	-	TBFG_10530	-	hypothetical protein
531	 61.82	-1	615399..615749	+	116	148821722	-	TBFG_10531	-	methyltransferase
532	 62.09	0	615742..616047	+	101	148821723	-	TBFG_10532	-	methyltransferase
533	 62.22	0	616182..617486	+	434	148821724	-	TBFG_10533	-	gaba permease gabP (4-amino butyrate transport carrier)
534	 65.91	0	617470..617865	-	131	148821725	-	TBFG_10534	-	hypothetical protein
535	 69.76	+1	617979..619367	+	462	148821726	-	TBFG_10535	-	glutamate-1-semialdehyde aminotransferase
536	 69.13	+1	619367..619975	+	202	148821727	-	TBFG_10536	-	hypothetical protein
537	 67.74	0	619990..620640	+	216	148821728	-	TBFG_10537	-	thioredoxin
538	 69.23	+1	620637..621416	+	259	148821729	-	TBFG_10538	-	cytochrome C-type biogenesis protein ccdA
539	 70.00	+1	621449..623038	+	529	148821730	-	TBFG_10539	-	transmembrane protein
540	 68.10	0	623035..624009	+	324	148821731	-	TBFG_10540	-	cytochrome C-type biogenesis protein ccsA
541	 69.54	+1	624051..625268	+	405	148821732	-	TBFG_10541	-	hypothetical protein
542	 67.92	0	625473..625790	+	105	148821733	-	TBFG_10542	-	hypothetical protein
543	 76.89	+2	625937..627805	+	622	148821734	-	TBFG_10543	-	PE-PGRS family protein
544	 65.97	0	627701..628708	-	335	148821735	-	TBFG_10544	-	3-oxoacyl-(acyl carrier protein) synthase III
545	 69.74	+1	628790..629668	-	292	148821736	-	TBFG_10545	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
546	 66.67	0	629685..630479	+	264	148821737	-	TBFG_10546	-	5'-methylthioadenosine phosphorylase
547	 70.32	+1	630476..631516	+	346	148821738	-	TBFG_10547	-	UDP-glucose 4-epimerase galE3
548	 66.81	0	631526..632959	-	477	148821739	-	TBFG_10548	-	hypothetical protein
549	 71.04	+1	633268..634914	+	548	148821740	-	TBFG_10549	-	hypothetical protein
550	 70.77	+1	634971..635603	+	210	148821741	-	TBFG_10550	-	dolichyl-phosphate sugar synthase
551	 69.38	+1	635600..636262	+	220	148821742	-	TBFG_10551	-	hypothetical protein
552	 68.59	0	636283..637632	-	449	148821743	-	TBFG_10552	-	integral membrane protein
553	 69.05	+1	637644..638732	-	362	148821744	-	TBFG_10553	-	O-succinylbenzoic acid--CoA ligase
554	 64.69	0	638801..639103	-	100	148821745	-	TBFG_10554	-	hypothetical protein
555	 66.67	0	639163..639441	-	92	148821746	-	TBFG_10555	-	transmembrane protein
556	 67.15	0	639438..640691	-	417	148821747	-	TBFG_10556	-	low affinity inorganic phosphate transporter integral membrane protein pitA
557	 65.37	0	640811..641197	-	128	148821748	-	TBFG_10557	-	hypothetical protein
558	 66.21	0	641260..642144	-	294	148821749	-	TBFG_10558	-	short chain dehydrogenase
559	 65.61	0	642240..643184	-	314	148821750	-	TBFG_10559	-	naphthoate synthase
560	 67.63	0	643456..643869	-	137	148821751	-	TBFG_10560	-	hypothetical protein
561	 65.62	0	644324..646039	-	571	148821752	-	TBFG_10561	-	acyl-CoA synthetase
562	 67.35	0	646108..647721	+	537	148821753	-	TBFG_10562	-	hypothetical protein
563	 70.23	+1	647718..648698	+	326	148821754	-	TBFG_10563	-	O-succinylbenzoate synthase
564	 64.77	0	648695..649483	+	262	148821755	-	TBFG_10564	-	peroxidase bpoC (non-haem peroxidase)
565	 69.73	+1	649526..651190	+	554	148821756	-	TBFG_10565	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
566	 60.66	-1	651187..651702	+	171	148821757	-	TBFG_10566	-	transmembrane protein
567	 66.93	0	651764..652900	+	378	148821758	-	TBFG_10567	-	mannosyltransferase pimB
568	 66.81	0	652917..653621	+	234	148821759	ubiE	TBFG_10568	-	ubiquinone/menaquinone biosynthesis methyltransferase
569	 62.54	0	653635..653973	-	112	148821760	-	TBFG_10569	-	hypothetical protein
570	 64.88	0	654007..654732	-	241	148821761	-	TBFG_10570	-	benzoquinone methyltransferase
571	 68.79	0	654757..655983	-	408	148821762	-	TBFG_10571	-	oxidoreductase
572	 67.76	0	655999..657006	+	335	148821763	-	TBFG_10572	-	polyprenyl-diphosphate synthase grcC1
573	 66.20	0	657107..657967	+	286	148821764	-	TBFG_10573	-	heat shock protein HtpX
574	 65.69	0	658152..659177	-	341	162286715	-	TBFG_10574	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
575	 62.56	0	659238..660698	-	486	148821766	-	TBFG_10575	-	monooxygenase
576	 62.20	0	660776..661267	-	163	148821767	-	TBFG_10576	-	nucleotide-binding protein
577	 63.73	0	661549..662568	+	339	148821768	-	TBFG_10577	-	methyltransferase
578	 68.43	0	662678..664096	+	472	148821769	-	TBFG_10578	-	cytochrome P450 135B1 cyp135B1
579	 63.30	0	664231..664497	+	88	148821770	-	TBFG_10579	-	hypothetical protein
580	 67.39	0	664523..666601	+	692	148821771	-	TBFG_10580	-	ribonucleoside-diphosphate reductase large subunit nrdZ
581	 66.44	0	666715..668046	-	443	148821772	-	TBFG_10581	-	hypothetical protein
582	 59.65	-1	668270..668611	-	113	148821773	-	TBFG_10582	-	hypothetical protein
583	 66.24	0	669079..670470	-	463	148821774	-	TBFG_10583	-	nicotinate phosphoribosyltransferase
584	 64.92	0	670480..671622	-	380	148821775	-	TBFG_10584	-	hypothetical protein
585	 67.10	0	671807..672973	-	388	148821776	-	TBFG_10585	-	hypothetical protein
586	 68.26	0	673067..674380	+	437	148821777	-	TBFG_10586	-	ArsR family transcriptional regulator
587	 64.76	0	674394..675179	+	261	148821778	-	TBFG_10587	-	hypothetical protein
588	 77.91	+2	675224..679144	-	1306	148821780	-	TBFG_10588	-	PE-PGRS family protein
589	 60.83	-1	679059..679538	+	159	148821779	-	TBFG_10589	-	hypothetical protein
590	 65.35	0	679466..680224	+	252	148821781	-	TBFG_10590	-	hypothetical protein
591	 63.39	0	680353..680931	-	192	148821782	-	TBFG_10591	-	hypothetical protein
592	 70.83	+1	680938..681153	+	71	148821783	-	TBFG_10592	-	hypothetical protein
593	 65.69	0	681150..681557	+	135	148821784	-	TBFG_10593	-	hypothetical protein
594	 63.90	0	681617..682303	-	228	148821785	-	TBFG_10594	-	lipoprotein lpqN
595	 64.65	0	682457..685090	+	877	148821786	-	TBFG_10595	-	hypothetical protein
596	 64.74	0	685113..687500	-	795	148821787	-	TBFG_10596	-	integral membrane protein
597	 62.79	0	687638..688360	+	240	148821788	-	TBFG_10597	-	GntR family transcriptional regulator
598	 64.66	0	688357..689154	+	265	148821789	-	TBFG_10598	-	integral membrane protein YrbE2a
599	 64.19	0	689156..690043	+	295	148821790	-	TBFG_10599	-	integral membrane protein YrbE2b
600	 60.66	-1	690049..691263	+	404	148821791	-	TBFG_10600	-	MCE-family protein mce2A
601	 62.92	0	691260..692087	+	275	148821792	-	TBFG_10601	-	MCE-family protein mce2B
602	 60.00	-1	692036..692290	+	84	148821793	-	TBFG_10602	-	MCE family-like protein
603	 65.28	0	692287..693732	+	481	148821794	-	TBFG_10603	-	MCE-family protein mce2C
604	 62.93	0	693729..695255	+	508	148821795	-	TBFG_10604	-	MCE-family protein mce2D
605	 63.52	0	695252..696460	+	402	148821796	-	TBFG_10605	-	MCE family lipoprotein LprL
606	 63.96	0	696465..698015	+	516	148821797	-	TBFG_10606	-	MCE-family protein mce2F
607	 64.12	0	698067..698459	-	130	148821798	-	TBFG_10607	-	hypothetical protein
608	 64.34	0	698456..698713	-	85	148821799	-	TBFG_10608	-	hypothetical protein
609	 67.15	0	698896..700131	-	411	148821800	-	TBFG_10609	-	hypothetical protein
610	 65.94	0	700382..700795	-	137	148821801	-	TBFG_10610	-	hypothetical protein
611	 61.60	-1	700792..701028	-	78	148821802	-	TBFG_10611	-	hypothetical protein
612	 69.75	+1	701132..702265	-	377	148821803	-	TBFG_10612	-	two component sensor kinase
613	 69.16	+1	702266..703027	-	253	148821804	-	TBFG_10613	-	two component system DNA binding transcriptional regulatory protein tcrA
614	 74.68	+2	703084..703395	+	103	148821805	-	TBFG_10614	-	hypothetical protein
615	 69.61	+1	703467..704417	+	316	148821806	-	TBFG_10615	-	lipoprotein lpqO
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.