IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3825	 62.42	0	4285277..4286476	-	399	148825016	-	TBFG_13843	-	UDP-galactopyranose mutase glf
3826	 68.30	0	4286740..4287594	+	284	148825017	-	TBFG_13844	-	exported repetitive protein precursor pirG (cell surface protein)
3827	 66.05	0	4287799..4289418	+	539	148825018	-	TBFG_13845	-	hypothetical protein
3828	 64.09	0	4289572..4291086	+	504	148825019	-	TBFG_13846	-	PE-PGRS family protein
3829	 67.27	0	4291395..4292216	-	273	148825020	-	TBFG_13847	-	hypothetical protein
3830	 63.87	0	4292231..4293016	-	261	148825021	-	TBFG_13848	-	acyltransferase
3831	 67.59	0	4293034..4293789	-	251	148825022	-	TBFG_13849	-	acyltransferase
3832	 66.03	0	4293793..4294572	-	259	148825023	-	TBFG_13850	-	acyltransferase
3833	 70.11	+1	4294648..4295403	+	251	148825024	-	TBFG_13851	-	phosphotransferase
3834	 61.83	-1	4295450..4297000	+	516	148825025	-	TBFG_13852	-	hypothetical protein
3835	 61.26	-1	4297000..4297332	+	110	148825026	-	TBFG_13853	-	hypothetical protein
3836	 58.56	-2	4297420..4298826	-	468	148825027	-	TBFG_13854	-	polyketide synthase associated protein papA2
3837	 63.45	0	4298974..4299687	+	237	148825028	-	TBFG_13855	-	integral membrane protein
3838	 61.89	-1	4299722..4300936	+	404	148825029	-	TBFG_13856	-	hypothetical protein
3839	 60.61	-1	4301261..4304530	-	1089	148825030	-	TBFG_13857	-	integral membrane transport protein mmpL8
3840	 57.42	-2	4304640..4306175	-	511	148825031	-	TBFG_13858	-	polyketide synthase associated protein papA1
3841	 65.51	0	4306226..4312606	-	2126	148825032	-	TBFG_13859	-	polyketide synthase pks2
3842	 57.55	-2	4312813..4314567	+	584	148825033	-	TBFG_13860	-	acyl-CoA synthetase
3843	 66.18	0	4314564..4315787	-	407	148825034	-	TBFG_13861	-	transposase
3844	 63.24	0	4315787..4316398	-	203	148825035	-	TBFG_13862	-	resolvase
3845	 64.25	0	4316399..4318009	-	536	148825036	-	TBFG_13863	-	dehydrogenase
3846	 64.60	0	4318057..4318686	-	209	148825037	-	TBFG_13864	-	TetR family transcriptional regulator
3847	 62.11	0	4318758..4319240	+	160	148825038	-	TBFG_13865	-	hypothetical protein
3848	 65.45	0	4319237..4319812	-	191	148825039	-	TBFG_13866	-	hypothetical protein
3849	 65.40	0	4319868..4320659	+	263	148825040	-	TBFG_13867	-	AraC family transcriptional regulator
3850	 67.78	0	4320656..4321915	-	419	148825041	-	TBFG_13868	-	seryl-tRNA synthetase
3851	 69.85	+1	4322048..4323397	+	449	148825042	-	TBFG_13869	-	hypothetical protein
3852	 64.18	0	4323414..4323815	+	133	148825043	-	TBFG_13870	-	hypothetical protein
3853	 67.10	0	4324010..4324708	-	232	148825044	-	TBFG_13871	-	phosphoglycerate mutase
3854	 68.94	+1	4324705..4325670	-	321	148825045	-	TBFG_13872	-	prephenate dehydratase
3855	 66.92	0	4325766..4326542	+	258	148825046	-	TBFG_13873	-	hypothetical protein
3856	 64.25	0	4326568..4326981	+	137	148825047	-	TBFG_13874	-	transcriptional regulator
3857	 59.52	-1	4327179..4327724	+	181	148825048	-	TBFG_13875	-	bacterioferritin bfrB
3858	 66.67	0	4327739..4328563	-	274	148825049	-	TBFG_13876	-	glycerophosphoryl diester phosphodiesterase glpQ1
3859	 66.96	0	4328569..4329597	-	342	148825050	-	TBFG_13877	-	transmembrane protein
3860	 61.50	-1	4330686..4330898	-	70	148825051	-	TBFG_13878	-	hypothetical protein
3861	 59.02	-1	4331248..4331757	-	169	148825052	-	TBFG_13879	-	hypothetical protein
3862	 65.65	0	4331776..4332267	+	163	148825053	-	TBFG_13880	-	transposase
3863	 68.61	0	4332282..4332641	+	119	148825054	-	TBFG_13881	-	hypothetical protein
3864	 59.29	-1	4333705..4334328	+	207	148825055	-	TBFG_13882	-	superoxide dismutase [Fe] sodA
3865	 61.61	-1	4334539..4335072	+	177	148825056	-	TBFG_13883	-	hypothetical protein
3866	 67.11	0	4335327..4336235	+	302	148825057	-	TBFG_13884	-	transmembrane protein
3867	 64.91	0	4336500..4336898	+	132	148825058	-	TBFG_13885	-	hypothetical protein
3868	 68.49	0	4337016..4337672	+	218	148825059	-	TBFG_13886	-	hypothetical protein
3869	 70.18	+1	4337684..4337968	+	94	148825060	-	TBFG_13887	-	hypothetical protein
3870	 65.19	0	4338075..4338479	+	134	148825061	-	TBFG_13888	-	histone-like protein hns
3871	 64.98	0	4338496..4338969	+	157	148825062	-	TBFG_13889	-	ribonuclease activity regulator protein RraA
3872	 61.99	-1	4338977..4340473	-	498	148825063	-	TBFG_13890	-	monooxygenase ethA
3873	 65.28	0	4340549..4341199	+	216	148825064	-	TBFG_13891	-	TetR family transcriptional regulator
3874	 67.06	0	4341401..4342408	-	335	148825065	-	TBFG_13892	-	hypothetical protein
3875	 60.61	-1	4342417..4342614	-	65	148825066	-	TBFG_13893	-	hypothetical protein
3876	 65.17	0	4343039..4344505	-	488	148825067	gltD	TBFG_13894	-	glutamate synthase subunit beta
3877	 64.01	0	4344498..4349081	-	1527	148825068	-	TBFG_13895	-	ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB
3878	 67.01	0	4349778..4350950	+	390	148825069	-	TBFG_13896	-	hypothetical protein
3879	 65.81	0	4351172..4351522	-	116	148825070	-	TBFG_13897	-	transcriptional regulatory protein whiB-like whiB6
3880	 65.73	0	4351849..4353027	+	392	148825071	-	TBFG_13898	-	hypothetical protein
3881	 62.12	0	4353270..4354478	+	402	148825072	-	TBFG_13899	-	hypothetical protein
3882	 57.05	-2	4354566..4354877	+	103	148825073	-	TBFG_13900	-	hypothetical protein
3883	 66.67	0	4354880..4355731	+	283	148825074	-	TBFG_13901	-	hypothetical protein
3884	 63.77	0	4355770..4356321	+	183	148825075	-	TBFG_13902	-	hypothetical protein
3885	 64.40	0	4356314..4358035	+	573	148825076	-	TBFG_13903	-	hypothetical protein
3886	 64.52	0	4358039..4359481	+	480	148825077	-	TBFG_13904	-	hypothetical protein
3887	 63.10	0	4359481..4361724	+	747	148825078	-	TBFG_13905	-	transmembrane protein
3888	 63.06	0	4361827..4363602	+	591	148825079	-	TBFG_13906	-	hypothetical protein
3889	 65.32	0	4363745..4364041	+	98	148825080	-	TBFG_13907	-	PE family protein
3890	 67.48	0	4364075..4365181	+	368	148825081	-	TBFG_13908	-	PPE family protein
3891	 63.37	0	4365274..4365576	+	100	148825082	-	TBFG_13909	-	10 kDa culture filtrate antigen EsxB
3892	 61.11	-1	4365609..4365896	+	95	148825083	-	TBFG_13910	-	6 kDa early secretory antigenic target esxA (Esat-6)
3893	 66.27	0	4366010..4368010	+	666	148825084	-	TBFG_13911	-	proline and alanine rich protein
3894	 64.10	0	4368103..4369542	+	479	148825085	-	TBFG_13912	-	transmembrane protein
3895	 66.79	0	4369693..4370535	+	280	148825086	-	TBFG_13913	-	hypothetical protein
3896	 67.49	0	4370593..4372782	-	729	148825087	-	TBFG_13914	-	hypothetical protein
3897	 64.37	0	4373199..4373546	-	115	148825088	-	TBFG_13915	-	hypothetical protein
3898	 65.15	0	4373543..4374925	-	460	148825089	-	TBFG_13916	-	hypothetical protein
3899	 66.23	0	4375032..4376420	-	462	148825090	-	TBFG_13917	-	hypothetical protein
3900	 68.27	0	4376417..4377787	-	456	148825091	-	TBFG_13918	-	membrane-anchored mycosin mycP1
3901	 62.69	0	4377979..4379838	-	619	148825092	-	TBFG_13919	-	hypothetical protein
3902	 65.80	0	4379908..4381521	-	537	148825093	-	TBFG_13920	-	hypothetical protein
3903	 67.71	0	4381518..4383236	-	572	148825094	-	TBFG_13921	-	alanine and proline rich membrane-anchored mycosin mycP2
3904	 64.90	0	4383155..4384684	-	509	148825095	-	TBFG_13922	-	transmembrane protein
3905	 60.04	-1	4384681..4385706	-	341	148825096	-	TBFG_13923	-	hypothetical protein
3906	 67.15	0	4385800..4386630	-	276	148825097	-	TBFG_13924	-	hypothetical protein
3907	 61.11	-1	4386726..4387013	-	95	148825098	-	TBFG_13925	-	Esat-6 like protein esxC (Esat-6 like protein 11)
3908	 60.80	-1	4387049..4387372	-	107	148825099	-	TBFG_13926	-	Esat-6 like protein esxD
3909	 70.92	+1	4387484..4388683	-	399	148825100	-	TBFG_13927	-	PPE family protein
3910	 67.09	0	4388762..4388995	-	77	148825101	-	TBFG_13928	-	PE family protein
3911	 64.16	0	4389262..4393452	-	1396	148825102	-	TBFG_13929	-	hypothetical protein
3912	 69.62	+1	4393453..4394940	-	495	148825103	-	TBFG_13930	-	hypothetical protein
3913	 67.99	0	4394943..4395851	-	302	148825104	-	TBFG_13931	-	hypothetical protein
3914	 69.92	+1	4396001..4396645	-	214	148825105	-	TBFG_13932	-	hypothetical protein
3915	 65.77	0	4396658..4396990	-	110	148825106	-	TBFG_13933	-	hypothetical protein
3916	 71.05	+1	4397152..4398246	-	364	148825107	-	TBFG_13934	-	hypothetical protein
3917	 63.89	0	4398378..4399313	-	311	148825108	-	TBFG_13935	-	hypothetical protein
3918	 64.44	0	4399370..4399819	-	149	148825109	-	TBFG_13936	-	hypothetical protein
3919	 51.60	-2	4400370..4400900	-	176	148825110	-	TBFG_13937	-	hypothetical protein
3920	 66.08	0	4400897..4403437	-	846	148825111	-	TBFG_13938	-	hypothetical protein
3921	 67.03	0	4403442..4403714	-	90	148825112	-	TBFG_13939	-	Esat-6 like protein esxE
3922	 68.27	0	4403725..4404036	-	103	148825113	-	TBFG_13940	-	Esat-6 like protein esxF
3923	 67.65	0	4404102..4404611	-	169	148825114	-	TBFG_13941	-	hypothetical protein
3924	 66.53	0	4404636..4406078	-	480	148825115	-	TBFG_13942	-	poly(A) polymerase pcnA
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.