IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3670	 70.54	+1	4109140..4109940	-	266	148824861	-	TBFG_13688	-	transmembrane protein
3671	 68.65	0	4109937..4110995	-	352	148824862	-	TBFG_13689	-	hypothetical protein
3672	 70.66	+1	4111097..4112149	-	350	148824863	-	TBFG_13690	-	hypothetical protein
3673	 65.97	0	4112648..4113511	+	287	148824864	-	TBFG_13691	-	hypothetical protein
3674	 72.50	+2	4114266..4115036	-	256	148824865	-	TBFG_13692	-	hypothetical protein
3675	 66.91	0	4115033..4116679	-	548	148824866	-	TBFG_13693	-	dipeptide-transport ATP-binding protein ABC transporter dppD
3676	 64.04	0	4116676..4117476	-	266	148824867	-	TBFG_13694	-	dipeptide-transport integral membrane protein ABC transporter dppC
3677	 63.75	0	4117532..4118458	-	308	148824868	-	TBFG_13695	-	dipeptide-transport integral membrane protein ABC transporter dppB
3678	 64.94	0	4118460..4120085	-	541	148824869	-	TBFG_13696	-	periplasmic dipeptide-binding lipoprotein dppA
3679	 65.24	0	4120461..4120670	+	69	148824870	-	TBFG_13697	-	hypothetical protein
3680	 65.34	0	4120793..4122748	+	651	148824871	-	TBFG_13698	-	acetyl-CoA synthetase
3681	 66.67	0	4122784..4123482	-	232	148824872	-	TBFG_13699	-	protease
3682	 61.08	-1	4123828..4124346	+	172	148824873	-	TBFG_13700	-	transmembrane protein
3683	 67.99	0	4124347..4125330	+	327	148824874	-	TBFG_13701	-	epoxide hydrolase ephE
3684	 66.25	0	4125323..4126516	-	397	148824875	-	TBFG_13702	-	membrane-associated serine protease
3685	 68.61	0	4126522..4127343	-	273	148824876	-	TBFG_13703	-	hypothetical protein
3686	 69.74	+1	4127475..4128158	-	227	148824877	-	TBFG_13704	-	membrane-anchored thioredoxin-like protein
3687	 64.91	0	4128158..4128895	-	245	148824878	-	TBFG_13705	-	endonuclease III nth
3688	 62.43	0	4129003..4129380	+	125	148824879	-	TBFG_13706	-	hypothetical protein
3689	 64.74	0	4129479..4130153	+	224	148824880	-	TBFG_13707	-	Cpr/FNR family transcriptional regulator
3690	 65.03	0	4130259..4131053	-	264	148824881	-	TBFG_13708	-	hydrolase
3691	 67.11	0	4131060..4131515	-	151	148824882	-	TBFG_13709	-	hypothetical protein
3692	 63.93	0	4131777..4132799	+	340	148824883	-	TBFG_13710	-	anion transporter ATPase
3693	 64.17	0	4132796..4133956	+	386	148824884	-	TBFG_13711	-	anion transporter ATPase
3694	 62.46	0	4134199..4134555	-	118	148824885	-	TBFG_13712	-	transcriptional regulatory protein whib-like whiB4
3695	 65.31	0	4134917..4137349	+	810	148824886	-	TBFG_13713	-	bifunctional membrane-associated penicillin-binding protein 1A/1B ponA2: penicillin-insensitive transglycosylase + penicillin-sensitive transpeptidase
3696	 67.08	0	4137418..4138377	+	319	148824887	-	TBFG_13714	-	hypothetical protein
3697	 65.85	0	4138374..4139480	+	368	148824888	-	TBFG_13715	-	lyase
3698	 65.97	0	4140296..4141726	-	476	148824889	-	TBFG_13716	-	cytochrome P450 137 cyp137
3699	 67.55	0	4141752..4142090	-	112	148824890	-	TBFG_13717	-	hypothetical protein
3700	 58.27	-2	4142324..4142692	-	122	148824891	-	TBFG_13718	-	anti-anti-sigma factor rsfB
3701	 63.87	0	4142894..4143358	-	154	148824893	-	TBFG_13719	-	hypothetical protein
3702	 67.26	0	4143358..4144713	+	451	148824892	-	TBFG_13720	-	transmembrane protein
3703	 64.22	0	4144740..4145393	+	217	148824894	-	TBFG_13721	-	hypothetical protein
3704	 65.93	0	4145441..4146520	+	359	148824895	-	TBFG_13722	-	hypothetical protein
3705	 66.48	0	4146517..4147593	+	358	148824896	-	TBFG_13723	-	methanol dehydrogenase transcriptional regulatory protein moxR2
3706	 69.60	+1	4147685..4149049	+	454	148824897	-	TBFG_13724	-	hypothetical protein
3707	 64.55	0	4149123..4150115	-	330	148824898	-	TBFG_13725	-	transmembrane protein
3708	 67.31	0	4150207..4151139	+	310	148824899	-	TBFG_13726	-	hypothetical protein
3709	 64.29	0	4151203..4152756	-	517	148824900	glpK	TBFG_13727	-	glycerol kinase
3710	 62.33	0	4152806..4153243	-	145	148824901	-	TBFG_13728	-	hypothetical protein
3711	 63.20	0	4153494..4155023	+	509	148824902	-	TBFG_13729	-	hypothetical protein
3712	 65.53	0	4155045..4155746	+	233	148824903	-	TBFG_13730	-	hypothetical protein
3713	 70.42	+1	4155749..4156921	-	390	148824904	-	TBFG_13731	-	hypothetical protein
3714	 63.56	0	4156952..4157917	-	321	148824905	-	TBFG_13732	-	hypothetical protein
3715	 66.81	0	4157914..4158615	-	233	148824906	-	TBFG_13733	-	hypothetical protein
3716	 68.78	0	4158615..4159892	-	425	148824907	-	TBFG_13734	-	hypothetical protein
3717	 68.21	0	4159889..4161187	-	432	148824908	-	TBFG_13735	-	glutamate-cysteine ligase gshA
3718	 65.89	0	4161319..4161963	-	214	148824909	-	TBFG_13736	-	hypothetical protein
3719	 69.49	+1	4162092..4162481	-	129	148824910	-	TBFG_13737	-	proline rich protein
3720	 67.29	0	4162592..4162912	-	106	148824911	-	TBFG_13738	-	proline rich protein
3721	 68.55	0	4163031..4164041	-	336	148824912	-	TBFG_13739	-	hypothetical protein
3722	 68.69	0	4164181..4165218	-	345	148824913	-	TBFG_13740	-	aspartate-semialdehyde dehydrogenase
3723	 66.03	0	4165219..4166484	-	421	148824914	-	TBFG_13741	-	aspartate kinase
3724	 66.10	0	4166741..4168675	+	644	148824915	-	TBFG_13742	-	2-isopropylmalate synthase
3725	 67.47	0	4168741..4169730	-	329	148824916	-	TBFG_13743	-	DNA polymerase III subunit epsilon
3726	 70.45	+1	4169982..4171223	+	413	148824917	-	TBFG_13744	-	ligase
3727	 69.40	+1	4171228..4171923	+	231	148824918	-	TBFG_13745	-	cobyric acid synthase cobQ2
3728	 65.43	0	4171932..4172822	-	296	148824919	-	TBFG_13746	-	hypothetical protein
3729	 65.69	0	4172890..4173501	-	203	148824920	recR	TBFG_13747	-	recombination protein RecR
3730	 67.97	0	4173513..4173896	-	127	148824921	-	TBFG_13748	-	hypothetical protein
3731	 66.39	0	4174049..4174774	+	241	148824922	-	TBFG_13749	-	hypothetical protein
3732	 63.51	0	4174816..4175259	-	147	148824923	-	TBFG_13750	-	hypothetical protein
3733	 61.96	-1	4175319..4176719	+	466	148824924	-	TBFG_13751	-	hypothetical protein
3734	 63.90	0	4176737..4177999	+	420	148824925	-	TBFG_13752	-	fatty acid synthase
3735	 68.57	0	4177996..4179732	-	578	148824926	-	TBFG_13753	-	DNA polymerase III subunits gamma and tau
3736	 63.15	0	4179822..4181129	-	435	148824927	-	TBFG_13754	-	hypothetical protein
3737	 67.19	0	4181537..4182301	+	254	148824928	-	TBFG_13755	-	transmembrane protein
3738	 64.58	0	4182547..4183170	+	207	148824929	-	TBFG_13756	-	cutinase cut5
3739	 63.66	0	4183215..4184144	+	309	148824930	-	TBFG_13757	-	oxidoreductase
3740	 65.24	0	4184422..4185615	+	397	148824931	-	TBFG_13758	-	dehydrogenase
3741	 60.81	-1	4185956..4187764	+	602	148824932	-	TBFG_13759	-	oxidoreductase
3742	 69.04	+1	4187874..4191071	+	1065	148824933	-	TBFG_13760	-	hypothetical protein
3743	 65.12	0	4191286..4193616	+	776	148824934	-	TBFG_13761	-	transferase
3744	 66.38	0	4193681..4194721	-	346	148824935	-	TBFG_13762	-	hypothetical protein
3745	 64.72	0	4194759..4195835	+	358	148824936	ligC	TBFG_13763	-	ATP-dependent DNA ligase
3746	 64.59	0	4195935..4196993	+	352	148824937	-	TBFG_13764	-	hypothetical protein
3747	 66.27	0	4197013..4197513	-	166	148824938	-	TBFG_13765	-	hypothetical protein
3748	 62.27	0	4197527..4198891	-	454	148824939	-	TBFG_13766	-	hypothetical protein
3749	 63.39	0	4199090..4199578	+	162	148824940	-	TBFG_13767	-	hypothetical protein
3750	 64.03	0	4199635..4200696	+	353	148824941	-	TBFG_13768	-	AraC family transcriptional regulator
3751	 68.81	0	4200700..4202289	+	529	148824942	-	TBFG_13769	-	transmembrane protein
3752	 64.24	0	4202286..4203233	-	315	148824943	-	TBFG_13770	-	PPE family protein
3753	 67.52	0	4203285..4203518	-	77	148824944	-	TBFG_13771	-	PPE family protein
3754	 65.40	0	4203834..4205180	-	448	148824945	-	TBFG_13772	-	hypothetical protein
3755	 65.04	0	4205180..4205854	-	224	148824946	-	TBFG_13773	-	oxidoreductase
3756	 63.64	0	4205851..4206246	-	131	148824947	-	TBFG_13774	-	oxidoreductase
3757	 67.07	0	4206392..4208374	-	660	148824948	-	TBFG_13775	-	cation transporter ATPase ctpJ
3758	 61.03	-1	4208396..4208803	+	135	148824949	-	TBFG_13776	-	ArsR family transcriptional regulator
3759	 65.73	0	4208887..4209099	-	70	148824950	-	TBFG_13777	-	hypothetical protein
3760	 66.67	0	4209172..4209507	-	111	148824951	-	TBFG_13778	-	PE family protein
3761	 61.20	-1	4209725..4210108	+	127	148824952	-	TBFG_13779	-	hypothetical protein
3762	 66.39	0	4210238..4210597	+	119	148824953	-	TBFG_13780	-	hypothetical protein
3763	 59.02	-1	4210630..4211139	-	169	148824954	-	TBFG_13781	-	hypothetical protein
3764	 59.29	-1	4211207..4211599	-	130	148824955	-	TBFG_13782	-	excisionase
3765	 61.11	-1	4211875..4212090	+	71	148824956	-	TBFG_13783	-	integrase
3766	 72.98	+2	4212248..4212706	-	152	148824957	-	TBFG_13784	-	cytidine/deoxycytidylate deaminase
3767	 65.90	0	4212722..4213243	-	173	148824958	-	TBFG_13785	-	hypothetical protein
3768	 67.39	0	4213356..4214327	+	323	148824959	-	TBFG_13786	-	prephenate dehydrogenase
3769	 61.17	-1	4214290..4214889	-	199	148824960	-	TBFG_13787	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.