IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3332	 66.29	0	3718429..3719220	+	263	148824523	sdhB	TBFG_13350	-	succinate dehydrogenase iron-sulfur subunit
3333	 61.31	-1	3719299..3719727	-	142	148824524	-	TBFG_13351	-	hypothetical protein
3334	 62.55	0	3719731..3719973	-	80	148824525	-	TBFG_13352	-	hypothetical protein
3335	 67.80	0	3720095..3720709	-	204	148824526	-	TBFG_13353	-	methyltransferase
3336	 59.16	-1	3720706..3721371	-	221	148824527	-	TBFG_13354	-	moaD-moaE fusion protein moaX
3337	 63.30	0	3721372..3721905	-	177	148824528	moaC	TBFG_13355	-	molybdenum cofactor biosynthesis protein C
3338	 58.40	-2	3721902..3722276	-	124	148824529	-	TBFG_13356	-	pterin-4-alpha-carbinolamine dehydratase moaB3
3339	 63.84	0	3722337..3723221	-	294	148824530	-	TBFG_13357	-	transposase
3340	 65.75	0	3723272..3723598	-	108	148824531	-	TBFG_13358	-	transposase
3341	 66.67	0	3724259..3725788	+	509	148824532	-	TBFG_13359	-	transposase
3342	 69.33	+1	3725721..3726659	-	312	148824533	-	TBFG_13360	-	RNA polymerase sigma factor SigJ
3343	 65.60	0	3726719..3728035	+	438	148824534	-	TBFG_13361	-	hypothetical protein
3344	 70.28	+1	3728104..3729321	+	405	148824535	-	TBFG_13362	-	penicillin-binding protein dacB1
3345	 67.59	0	3729417..3730925	+	502	148824536	-	TBFG_13363	-	sugar-transport integral membrane protein sugI
3346	 71.44	+1	3730922..3732073	+	383	148824537	-	TBFG_13364	-	N-acetylglucosamine-6-phosphate deacetylase nagA
3347	 67.26	0	3732264..3733109	-	281	148824539	-	TBFG_13365	-	hypothetical protein
3348	 61.46	-1	3733086..3733565	+	159	148824538	-	TBFG_13366	-	hypothetical protein
3349	 63.04	0	3733584..3734024	+	146	148824540	-	TBFG_13367	-	MerR family transcriptional regulator
3350	 65.06	0	3734058..3734927	-	289	148824541	-	TBFG_13368	-	integral membrane protein
3351	 63.30	0	3734948..3735958	-	336	148824542	-	TBFG_13369	-	tryptophanyl-tRNA synthetase
3352	 67.74	0	3736129..3736875	+	248	148824543	-	TBFG_13370	-	hypothetical protein
3353	 59.76	-1	3736942..3738171	-	409	148824544	-	TBFG_13371	-	isocitrate dehydrogenase
3354	 66.67	0	3738211..3738423	-	70	148824545	-	TBFG_13372	-	hypothetical protein
3355	 66.81	0	3738454..3739803	+	449	148824546	-	TBFG_13373	-	O-acetylhomoserine aminocarboxypropyltransferase
3356	 69.30	+1	3739815..3740954	+	379	148824547	metX	TBFG_13374	-	homoserine O-acetyltransferase
3357	 69.26	+1	3740951..3741682	+	243	148824548	-	TBFG_13375	-	methyltransferase
3358	 61.36	-1	3741691..3749289	-	2532	148824549	-	TBFG_13376	-	PPE family protein
3359	 79.15	+2	3749353..3750369	-	338	148824550	-	TBFG_13377	-	PE-PGRS family protein
3360	 77.42	+2	3750527..3755239	-	1570	148824551	-	TBFG_13378	-	PE-PGRS family protein
3361	 66.28	0	3755663..3755920	-	85	148824552	-	TBFG_13379	-	hypothetical protein
3362	 63.89	0	3756176..3763594	-	2472	148824553	-	TBFG_13380	-	PPE family protein
3363	 63.43	0	3763671..3765614	-	647	148824554	-	TBFG_13381	-	PPE family protein
3364	 59.15	-1	3765688..3766179	-	163	148824555	-	TBFG_13382	-	hypothetical protein
3365	 65.65	0	3766231..3766722	+	163	148824556	-	TBFG_13383	-	transposase
3366	 68.78	0	3766759..3767703	-	314	148824557	-	TBFG_13384	-	transposase
3367	 63.71	0	3767794..3768030	-	78	148824558	-	TBFG_13385	-	transposase
3368	 64.99	0	3768418..3779781	-	3787	148824559	-	TBFG_13386	-	PPE family protein
3369	 64.28	0	3779812..3780606	-	264	148824560	-	TBFG_13387	-	hypothetical protein
3370	 69.35	+1	3780688..3781059	-	123	148824561	-	TBFG_13388	-	oxidoreductase
3371	 65.90	0	3781202..3781462	-	86	148824562	-	TBFG_13389	-	hypothetical protein
3372	 67.44	0	3781577..3781966	+	129	148824563	-	TBFG_13390	-	hypothetical protein
3373	 65.99	0	3781980..3782273	-	97	148824564	-	TBFG_13391	-	hypothetical protein
3374	 68.79	0	3782270..3783115	-	281	148824565	-	TBFG_13392	-	bifunctional protein folD: methylenetetrahydrofolate dehydrogenase + methenyltetrahydrofolate cyclohydrolase
3375	 63.41	0	3783239..3783514	+	91	148824566	-	TBFG_13393	-	hypothetical protein
3376	 60.08	-1	3783511..3783768	+	85	148824567	-	TBFG_13394	-	hypothetical protein
3377	 67.34	0	3783810..3785000	+	396	148824568	-	TBFG_13395	-	oxidoreductase
3378	 63.96	0	3785117..3785485	+	122	148824569	-	TBFG_13396	-	hypothetical protein
3379	 64.67	0	3785482..3786033	-	183	148824570	-	TBFG_13397	-	hypothetical protein
3380	 63.75	0	3786040..3786621	-	193	148824571	-	TBFG_13398	-	ATP/GTP-binding protein
3381	 65.31	0	3786602..3786970	-	122	148824572	-	TBFG_13399	-	hypothetical protein
3382	 67.43	0	3786948..3787340	-	130	148824573	-	TBFG_13400	-	hypothetical protein
3383	 68.34	0	3787337..3789967	-	876	148824574	-	TBFG_13401	-	hypothetical protein
3384	 68.39	0	3790203..3790667	+	154	148824575	-	TBFG_13402	-	tRNA/rRNA methylase spoU
3385	 74.27	+2	3791034..3792809	+	591	148824576	-	TBFG_13403	-	PE-PGRS family protein
3386	 67.44	0	3792810..3793454	-	214	148824578	-	TBFG_13404	-	oxidoreductase
3387	 67.36	0	3793453..3793887	+	144	148824577	-	TBFG_13405	-	hypothetical protein
3388	 70.74	+1	3793976..3797215	-	1079	148824579	dnaE2	TBFG_13406	-	error-prone DNA polymerase
3389	 65.92	0	3797407..3798747	+	446	148824580	-	TBFG_13407	-	hypothetical protein
3390	 68.88	+1	3798789..3799964	+	391	148824581	-	TBFG_13408	-	trehalose 6-phosphate phosphatase otsB2
3391	 67.45	0	3800201..3800842	+	213	148824582	-	TBFG_13409	-	enoyl-CoA hydratase echA18
3392	 65.46	0	3800843..3801091	+	82	148824583	-	TBFG_13410	-	enoyl-CoA hydratase
3393	 66.32	0	3801096..3802523	+	475	148824584	-	TBFG_13411	-	amidase amiD (acylamidase)
3394	 62.84	0	3802631..3803284	+	217	148824585	-	TBFG_13412	-	hypothetical protein
3395	 54.25	-2	3803323..3804828	-	501	148824586	-	TBFG_13413	-	cyclase
3396	 48.71	-2	3804833..3805723	-	296	148824587	-	TBFG_13414	-	hypothetical protein
3397	 64.18	0	3805732..3807342	-	536	148824588	-	TBFG_13415	-	1-deoxy-D-xylulose-5-phosphate synthase
3398	 62.85	0	3807565..3808560	-	331	148824589	-	TBFG_13416	-	lytB-related protein lytB1
3399	 61.35	-1	3808554..3809606	-	350	148824590	-	TBFG_13417	-	polyprenyl synthetase idsB
3400	 68.96	+1	3810360..3810752	-	130	148824591	-	TBFG_13418	-	hypothetical protein
3401	 70.23	+1	3810752..3811060	-	102	148824592	-	TBFG_13419	-	hypothetical protein
3402	 65.96	0	3811209..3811913	+	234	148824593	-	TBFG_13420	-	transposase
3403	 66.22	0	3811903..3812580	+	225	148824594	-	TBFG_13421	-	transposase
3404	 78.51	+2	3812770..3814965	+	731	148824595	-	TBFG_13422	-	PE-PGRS family protein
3405	 68.50	0	3815036..3815908	-	290	148824596	-	TBFG_13423	-	dehydrogenase
3406	 63.01	0	3815982..3816692	+	236	148824597	-	TBFG_13424	-	lipoprotein lpqD
3407	 68.51	0	3816738..3818690	+	650	148824598	-	TBFG_13425	-	short chain dehydrogenase
3408	 60.19	-1	3818691..3819554	-	287	148824599	-	TBFG_13426	-	cyclopropane-fatty-acyl-phospholipid synthase 1 cmaA1
3409	 67.31	0	3819578..3820504	+	308	148824600	-	TBFG_13427	-	nucleoside hydrolase iunH (purine nucleosidase)
3410	 72.79	+2	3820559..3822142	-	527	148824601	-	TBFG_13428	-	hypothetical protein
3411	 69.76	+1	3822139..3822753	-	204	148824603	-	TBFG_13429	-	hypothetical protein
3412	 62.59	0	3822752..3823462	+	236	148824602	-	TBFG_13430	-	hypothetical protein
3413	 67.17	0	3823618..3825195	-	525	148824604	guaA	TBFG_13431	-	bifunctional GMP synthase/glutamine amidotransferase protein
3414	 62.82	0	3825207..3826115	-	302	148824605	-	TBFG_13432	-	phytoene synthase phyA
3415	 65.19	0	3826144..3827223	-	359	148824606	-	TBFG_13433	-	multi-functional geranylgeranyl pyrophosphate synthetase idsA1: dimethylallyltransferase + geranyltranstransferase + farnesyltranstransferase
3416	 63.13	0	3827246..3828292	+	348	148824607	-	TBFG_13434	-	hypothetical protein
3417	 67.43	0	3828356..3829144	+	262	148824608	-	TBFG_13435	-	hydrolase
3418	 67.68	0	3829159..3831519	+	786	148824609	-	TBFG_13436	-	hypothetical protein
3419	 64.49	0	3831945..3833183	-	412	148824610	-	TBFG_13437	-	hypothetical protein
3420	 64.04	0	3833554..3835155	-	533	148824611	-	TBFG_13438	-	hypothetical protein
3421	 59.15	-1	3835172..3835876	-	234	148824612	-	TBFG_13439	-	hypothetical protein
3422	 65.96	0	3835994..3836560	-	188	148824613	-	TBFG_13440	-	transcriptional regulator
3423	 65.99	0	3836622..3837509	+	295	148824614	-	TBFG_13441	-	dioxygenase
3424	 63.26	0	3837840..3838250	+	136	148824615	-	TBFG_13442	-	hypothetical protein
3425	 66.72	0	3838283..3840019	-	578	148824616	-	TBFG_13443	-	cholesterol oxidase precursor choD
3426	 70.48	+1	3840075..3841202	-	375	148824617	-	TBFG_13444	-	inositol-5-monophosphate dehydrogenase
3427	 67.80	0	3841222..3842811	-	529	148824618	-	TBFG_13445	-	inositol-5-monophosphate dehydrogenase
3428	 63.99	0	3843018..3843428	+	136	148824619	-	TBFG_13446	-	hypothetical protein
3429	 68.11	0	3843438..3844337	-	299	148824620	-	TBFG_13447	-	hypothetical protein
3430	 65.73	0	3844330..3844968	-	212	148824621	-	TBFG_13448	-	RNA polymerase sigma factor SigD
3431	 68.84	0	3844986..3845813	-	275	148824622	-	TBFG_13449	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.