IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3295	 67.59	0	3677533..3677964	+	143	148824486	-	TBFG_13313	-	hypothetical protein
3296	 67.94	0	3678072..3679874	+	600	148824487	-	TBFG_13314	-	bifunctional protein acetyl-/propionyl-coenzyme A carboxylase alpha subunit accA3: biotin carboxylase + biotin carboxyl carrier protein
3297	 64.50	0	3679884..3680669	-	261	148824488	-	TBFG_13315	-	RNA polymerase sigma factor SigF
3298	 65.07	0	3680666..3681292	-	208	148824489	-	TBFG_13316	-	anti-sigma factor rsbW (sigma negative effector)
3299	 61.84	-1	3681301..3681714	-	137	148824490	-	TBFG_13317	-	hypothetical protein
3300	 67.72	0	3681749..3682126	-	125	148824491	-	TBFG_13318	-	hypothetical protein
3301	 64.74	0	3682160..3683509	-	449	148824492	-	TBFG_13319	-	L-lysine aminotransferase
3302	 61.15	-1	3683560..3684012	-	150	148824493	-	TBFG_13320	-	AsnC family transcriptional regulator
3303	 66.51	0	3684043..3685290	+	415	148824494	-	TBFG_13321	-	hypothetical protein
3304	 69.90	+1	3685317..3686801	+	494	148824495	-	TBFG_13322	-	piperideine-6-carboxilic acid dehydrogenase pcd
3305	 63.46	0	3686901..3687710	-	269	148824496	-	TBFG_13323	-	hypothetical protein
3306	 65.32	0	3687781..3688446	+	221	148824497	-	TBFG_13324	-	TetR family transcriptional regulator
3307	 69.84	+1	3688490..3693031	+	1513	148824498	-	TBFG_13325	-	ATP-dependent helicase lhr
3308	 67.84	0	3693035..3693802	+	255	148824499	-	TBFG_13326	-	endonuclease VIII nei
3309	 66.12	0	3693825..3694739	-	304	148824500	-	TBFG_13327	-	esterase lipoprotein lpqC
3310	 64.92	0	3694766..3697678	-	970	148824501	-	TBFG_13328	-	arylsulfatase atsB (aryl-sulfate sulphohydrolase)
3311	 68.52	0	3697698..3698615	-	305	148824502	-	TBFG_13329	-	hypothetical protein
3312	 60.51	-1	3698627..3699292	-	221	148824503	-	TBFG_13330	-	phosphate-transport system transcriptional regulatory protein phoY1
3313	 66.78	0	3699400..3701157	-	585	148824504	-	TBFG_13331	-	glycerol-3-phosphate dehydrogenase glpD2
3314	 67.66	0	3701238..3702653	-	471	148824505	-	TBFG_13332	-	flavoprotein disulfide reductase
3315	 64.58	0	3702798..3703277	+	159	148824506	-	TBFG_13333	-	hypothetical protein
3316	 66.67	0	3703296..3704465	-	389	148824507	-	TBFG_13334	-	N-acyl-L-amino acid amidohydrolase amiA1
3317	 69.03	+1	3704462..3705646	-	394	148824508	-	TBFG_13335	-	amidohydrolase amiB1 (aminohydrolase)
3318	 71.13	+1	3705711..3706517	+	268	148824509	-	TBFG_13336	-	purine nucleoside phosphorylase
3319	 69.22	+1	3706521..3708125	+	534	148824510	-	TBFG_13337	-	phosphomannomutase pmmB
3320	 67.47	0	3708127..3708750	-	207	148824511	upp	TBFG_13338	-	uracil phosphoribosyltransferase
3321	 61.67	-1	3708855..3709754	+	299	148824512	-	TBFG_13339	-	acid phosphatase
3322	 64.45	0	3709778..3711040	+	420	148824513	-	TBFG_13340	-	hypothetical protein
3323	 67.10	0	3711061..3711987	-	308	148824514	-	TBFG_13341	-	hypothetical protein
3324	 63.74	0	3712013..3712183	-	56	148824515	-	TBFG_13342	-	hypothetical protein
3325	 71.79	+1	3712362..3712673	-	103	148824516	-	TBFG_13343	-	secreted protein antigen
3326	 64.85	0	3712744..3713841	-	365	148824517	-	TBFG_13344	-	adenosine deaminase
3327	 68.30	0	3713841..3715124	-	427	148824518	deoA	TBFG_13345	-	thymidine phosphorylase
3328	 66.92	0	3715121..3715522	-	133	148824519	-	TBFG_13346	-	cytidine deaminase
3329	 60.92	-1	3715663..3716097	+	144	148824520	-	TBFG_13347	-	succinate dehydrogenase cytochrome B-556 subunit sdhC
3330	 59.31	-1	3716094..3716528	+	144	148824521	-	TBFG_13348	-	succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
3331	 65.43	0	3716657..3718429	+	590	148824522	sdhA	TBFG_13349	-	succinate dehydrogenase flavoprotein subunit
3332	 66.29	0	3718429..3719220	+	263	148824523	sdhB	TBFG_13350	-	succinate dehydrogenase iron-sulfur subunit
3333	 61.31	-1	3719299..3719727	-	142	148824524	-	TBFG_13351	-	hypothetical protein
3334	 62.55	0	3719731..3719973	-	80	148824525	-	TBFG_13352	-	hypothetical protein
3335	 67.80	0	3720095..3720709	-	204	148824526	-	TBFG_13353	-	methyltransferase
3336	 59.16	-1	3720706..3721371	-	221	148824527	-	TBFG_13354	-	moaD-moaE fusion protein moaX
3337	 63.30	0	3721372..3721905	-	177	148824528	moaC	TBFG_13355	-	molybdenum cofactor biosynthesis protein C
3338	 58.40	-2	3721902..3722276	-	124	148824529	-	TBFG_13356	-	pterin-4-alpha-carbinolamine dehydratase moaB3
3339	 63.84	0	3722337..3723221	-	294	148824530	-	TBFG_13357	-	transposase
3340	 65.75	0	3723272..3723598	-	108	148824531	-	TBFG_13358	-	transposase
3341	 66.67	0	3724259..3725788	+	509	148824532	-	TBFG_13359	-	transposase
3342	 69.33	+1	3725721..3726659	-	312	148824533	-	TBFG_13360	-	RNA polymerase sigma factor SigJ
3343	 65.60	0	3726719..3728035	+	438	148824534	-	TBFG_13361	-	hypothetical protein
3344	 70.28	+1	3728104..3729321	+	405	148824535	-	TBFG_13362	-	penicillin-binding protein dacB1
3345	 67.59	0	3729417..3730925	+	502	148824536	-	TBFG_13363	-	sugar-transport integral membrane protein sugI
3346	 71.44	+1	3730922..3732073	+	383	148824537	-	TBFG_13364	-	N-acetylglucosamine-6-phosphate deacetylase nagA
3347	 67.26	0	3732264..3733109	-	281	148824539	-	TBFG_13365	-	hypothetical protein
3348	 61.46	-1	3733086..3733565	+	159	148824538	-	TBFG_13366	-	hypothetical protein
3349	 63.04	0	3733584..3734024	+	146	148824540	-	TBFG_13367	-	MerR family transcriptional regulator
3350	 65.06	0	3734058..3734927	-	289	148824541	-	TBFG_13368	-	integral membrane protein
3351	 63.30	0	3734948..3735958	-	336	148824542	-	TBFG_13369	-	tryptophanyl-tRNA synthetase
3352	 67.74	0	3736129..3736875	+	248	148824543	-	TBFG_13370	-	hypothetical protein
3353	 59.76	-1	3736942..3738171	-	409	148824544	-	TBFG_13371	-	isocitrate dehydrogenase
3354	 66.67	0	3738211..3738423	-	70	148824545	-	TBFG_13372	-	hypothetical protein
3355	 66.81	0	3738454..3739803	+	449	148824546	-	TBFG_13373	-	O-acetylhomoserine aminocarboxypropyltransferase
3356	 69.30	+1	3739815..3740954	+	379	148824547	metX	TBFG_13374	-	homoserine O-acetyltransferase
3357	 69.26	+1	3740951..3741682	+	243	148824548	-	TBFG_13375	-	methyltransferase
3358	 61.36	-1	3741691..3749289	-	2532	148824549	-	TBFG_13376	-	PPE family protein
3359	 79.15	+2	3749353..3750369	-	338	148824550	-	TBFG_13377	-	PE-PGRS family protein
3360	 77.42	+2	3750527..3755239	-	1570	148824551	-	TBFG_13378	-	PE-PGRS family protein
3361	 66.28	0	3755663..3755920	-	85	148824552	-	TBFG_13379	-	hypothetical protein
3362	 63.89	0	3756176..3763594	-	2472	148824553	-	TBFG_13380	-	PPE family protein
3363	 63.43	0	3763671..3765614	-	647	148824554	-	TBFG_13381	-	PPE family protein
3364	 59.15	-1	3765688..3766179	-	163	148824555	-	TBFG_13382	-	hypothetical protein
3365	 65.65	0	3766231..3766722	+	163	148824556	-	TBFG_13383	-	transposase
3366	 68.78	0	3766759..3767703	-	314	148824557	-	TBFG_13384	-	transposase
3367	 63.71	0	3767794..3768030	-	78	148824558	-	TBFG_13385	-	transposase
3368	 64.99	0	3768418..3779781	-	3787	148824559	-	TBFG_13386	-	PPE family protein
3369	 64.28	0	3779812..3780606	-	264	148824560	-	TBFG_13387	-	hypothetical protein
3370	 69.35	+1	3780688..3781059	-	123	148824561	-	TBFG_13388	-	oxidoreductase
3371	 65.90	0	3781202..3781462	-	86	148824562	-	TBFG_13389	-	hypothetical protein
3372	 67.44	0	3781577..3781966	+	129	148824563	-	TBFG_13390	-	hypothetical protein
3373	 65.99	0	3781980..3782273	-	97	148824564	-	TBFG_13391	-	hypothetical protein
3374	 68.79	0	3782270..3783115	-	281	148824565	-	TBFG_13392	-	bifunctional protein folD: methylenetetrahydrofolate dehydrogenase + methenyltetrahydrofolate cyclohydrolase
3375	 63.41	0	3783239..3783514	+	91	148824566	-	TBFG_13393	-	hypothetical protein
3376	 60.08	-1	3783511..3783768	+	85	148824567	-	TBFG_13394	-	hypothetical protein
3377	 67.34	0	3783810..3785000	+	396	148824568	-	TBFG_13395	-	oxidoreductase
3378	 63.96	0	3785117..3785485	+	122	148824569	-	TBFG_13396	-	hypothetical protein
3379	 64.67	0	3785482..3786033	-	183	148824570	-	TBFG_13397	-	hypothetical protein
3380	 63.75	0	3786040..3786621	-	193	148824571	-	TBFG_13398	-	ATP/GTP-binding protein
3381	 65.31	0	3786602..3786970	-	122	148824572	-	TBFG_13399	-	hypothetical protein
3382	 67.43	0	3786948..3787340	-	130	148824573	-	TBFG_13400	-	hypothetical protein
3383	 68.34	0	3787337..3789967	-	876	148824574	-	TBFG_13401	-	hypothetical protein
3384	 68.39	0	3790203..3790667	+	154	148824575	-	TBFG_13402	-	tRNA/rRNA methylase spoU
3385	 74.27	+2	3791034..3792809	+	591	148824576	-	TBFG_13403	-	PE-PGRS family protein
3386	 67.44	0	3792810..3793454	-	214	148824578	-	TBFG_13404	-	oxidoreductase
3387	 67.36	0	3793453..3793887	+	144	148824577	-	TBFG_13405	-	hypothetical protein
3388	 70.74	+1	3793976..3797215	-	1079	148824579	dnaE2	TBFG_13406	-	error-prone DNA polymerase
3389	 65.92	0	3797407..3798747	+	446	148824580	-	TBFG_13407	-	hypothetical protein
3390	 68.88	+1	3798789..3799964	+	391	148824581	-	TBFG_13408	-	trehalose 6-phosphate phosphatase otsB2
3391	 67.45	0	3800201..3800842	+	213	148824582	-	TBFG_13409	-	enoyl-CoA hydratase echA18
3392	 65.46	0	3800843..3801091	+	82	148824583	-	TBFG_13410	-	enoyl-CoA hydratase
3393	 66.32	0	3801096..3802523	+	475	148824584	-	TBFG_13411	-	amidase amiD (acylamidase)
3394	 62.84	0	3802631..3803284	+	217	148824585	-	TBFG_13412	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.