IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3204	 66.56	0	3583367..3584308	-	313	148824395	nudC	TBFG_13222	-	NADH pyrophosphatase
3205	 64.98	0	3584367..3585434	-	355	148824396	-	TBFG_13223	-	transmembrane cation transporter
3206	 69.00	+1	3585496..3588801	-	1101	148824397	-	TBFG_13224	-	ATP-dependent DNA helicase
3207	 70.27	+1	3588798..3591965	-	1055	148824398	-	TBFG_13225	-	ATP-dependent DNA helicase
3208	 66.67	0	3592042..3592260	+	72	148824399	-	TBFG_13226	-	hypothetical protein
3209	 68.70	0	3592291..3593076	+	261	148824400	-	TBFG_13227	-	lipase lipV
3210	 66.34	0	3593079..3593384	+	101	148824401	-	TBFG_13228	-	DNA-methyltransferase
3211	 68.49	0	3593391..3594269	-	292	148824402	-	TBFG_13229	-	hypothetical protein
3212	 63.27	0	3594296..3595474	-	392	148824403	-	TBFG_13230	-	molybdopterin biosynthesis-like protein MoeZ
3213	 63.73	0	3595565..3596551	-	328	148824404	-	TBFG_13231	-	hypothetical protein
3214	 63.90	0	3596768..3597454	+	228	148824405	-	TBFG_13232	-	TetR family transcriptional regulator
3215	 64.84	0	3597441..3597713	-	90	148824406	-	TBFG_13233	-	hypothetical protein
3216	 70.00	+1	3597920..3598249	-	109	148824408	-	TBFG_13234	-	hrpA-like helicase
3217	 66.31	0	3598038..3598598	+	186	148824407	-	TBFG_13235	-	threonine and proline rich protein
3218	 64.66	0	3598608..3599303	-	231	148824409	-	TBFG_13236	-	hypothetical protein
3219	 67.49	0	3599562..3601145	+	527	148824410	-	TBFG_13237	-	ATP-dependent RNA helicase rhlE
3220	 67.89	0	3601158..3602381	+	407	148824411	-	TBFG_13238	-	hypothetical protein
3221	 64.42	0	3602457..3603257	-	266	148824412	-	TBFG_13239	-	hypothetical protein
3222	 64.77	0	3603336..3604022	+	228	148824413	-	TBFG_13240	-	acid phosphatase
3223	 66.40	0	3604019..3605137	+	372	148824414	-	TBFG_13241	-	isochorismate synthase entC
3224	 63.06	0	3605285..3605617	+	110	148824415	-	TBFG_13242	-	acetyltransferase
3225	 69.91	+1	3605569..3606000	-	143	148824416	-	TBFG_13243	-	integral membrane protein
3226	 65.94	0	3606233..3607198	+	321	148824417	-	TBFG_13244	-	hypothetical protein
3227	 63.53	0	3607491..3607745	+	84	148824418	-	TBFG_13245	-	transcriptional regulatory protein whib-like whiB1
3228	 64.67	0	3607807..3609312	-	501	148824419	-	TBFG_13246	-	two component sensor kinase
3229	 60.42	-1	3609329..3609568	-	79	148824420	-	TBFG_13247	-	putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
3230	 66.99	0	3609829..3610134	-	101	148824421	-	TBFG_13248	-	anti-sigma factor
3231	 67.39	0	3610131..3610682	-	183	148824422	-	TBFG_13249	-	hypothetical protein
3232	 61.98	-1	3610679..3611446	-	255	148824423	-	TBFG_13250	-	RNA polymerase sigma factor RpoE
3233	 65.25	0	3611629..3612477	+	282	148824424	-	TBFG_13251	-	short chain dehydrogenase
3234	 69.84	+1	3612413..3612601	+	62	148824425	-	TBFG_13252	-	hypothetical protein
3235	 67.12	0	3612579..3612797	+	72	148824426	-	TBFG_13253	-	hypothetical protein
3236	 66.46	0	3612794..3614218	-	474	148824427	-	TBFG_13254	-	transferase
3237	 67.98	0	3614342..3615100	-	252	148824428	-	TBFG_13255	-	hypothetical protein
3238	 70.44	+1	3615155..3616507	+	450	148824429	-	TBFG_13256	-	3-phosphoshikimate 1-carboxyvinyltransferase
3239	 69.99	+1	3616504..3617496	+	330	148824430	-	TBFG_13257	-	hypothetical protein
3240	 61.84	-1	3617529..3618812	-	427	148824431	-	TBFG_13258	-	linoleoyl-CoA desaturase
3241	 66.84	0	3618890..3620032	-	380	148824432	-	TBFG_13259	-	oxidoreductase
3242	 66.67	0	3620142..3620651	-	169	148824433	-	TBFG_13260	-	hypothetical protein
3243	 58.67	-2	3620648..3621535	-	295	148824434	-	TBFG_13261	-	transcriptional regulatory protein pvdS
3244	 62.52	0	3621559..3622161	-	200	148824435	-	TBFG_13262	-	hypothetical protein
3245	 64.22	0	3622152..3622967	-	271	148824436	-	TBFG_13263	-	hypothetical protein
3246	 70.09	+1	3623078..3623719	+	213	148824437	-	TBFG_13264	-	hypothetical protein
3247	 65.37	0	3623737..3624894	-	385	148824438	-	TBFG_13265	-	integral membrane transport protein
3248	 65.01	0	3624899..3625381	-	160	148824439	-	TBFG_13266	-	hypothetical protein
3249	 61.09	-1	3625442..3626176	-	244	148824440	-	TBFG_13267	-	integral membrane protein
3250	 66.92	0	3626235..3629381	-	1048	148824441	-	TBFG_13268	-	transmembrane transport protein
3251	 64.42	0	3629460..3632309	-	949	148824442	-	TBFG_13269	-	preprotein translocase subunit SecA
3252	 62.95	0	3632388..3633032	-	214	148824443	-	TBFG_13270	-	hypothetical protein
3253	 71.50	+1	3633348..3633989	-	213	148824444	-	TBFG_13271	-	hypothetical protein
3254	 66.90	0	3634027..3634869	-	280	148824445	-	TBFG_13272	-	hypothetical protein
3255	 67.58	0	3634937..3636688	-	583	148824446	-	TBFG_13273	-	lipoprotein LpqB
3256	 66.61	0	3636688..3638391	-	567	148824447	-	TBFG_13274	-	two component system sensor transduction histidine kinase mtrB
3257	 62.01	-1	3638441..3639127	-	228	148824448	-	TBFG_13275	-	two component system sensor transduction transcriptional regulatory protein mtrA
3258	 68.06	0	3639197..3639841	-	214	148824449	-	TBFG_13276	-	thymidylate kinase
3259	 63.78	0	3639938..3641425	-	495	148824450	-	TBFG_13277	-	S-adenosyl-L-homocysteine hydrolase
3260	 64.62	0	3641530..3642165	-	211	148824451	-	TBFG_13278	-	TetR family transcriptional regulator
3261	 61.75	-1	3642162..3642344	-	60	148824452	-	TBFG_13279	-	rubredoxin rubB
3262	 62.50	0	3642349..3642516	-	55	148824453	-	TBFG_13280	-	rubredoxin rubA
3263	 64.11	0	3642516..3643766	-	416	148824454	-	TBFG_13281	-	transmembrane alkane 1-monooxygenase alkB
3264	 64.65	0	3643875..3645362	-	495	148824455	-	TBFG_13282	-	cationic amino acid transport integral membrane protein
3265	 64.94	0	3645453..3646841	+	462	148824456	-	TBFG_13283	-	hypothetical protein
3266	 66.83	0	3646819..3648045	-	408	148824457	-	TBFG_13284	-	mannose-6-phosphate isomerase manA
3267	 71.37	+1	3648053..3649093	-	346	148824458	-	TBFG_13285	-	hypothetical protein
3268	 64.81	0	3649090..3650487	-	465	148824459	manB	TBFG_13286	-	phosphomannomutase/phosphoglucomutase
3269	 71.75	+1	3650589..3651080	-	163	148824460	-	TBFG_13287	-	hypothetical protein
3270	 66.48	0	3651095..3651622	+	175	148824461	-	TBFG_13288	-	hypothetical protein
3271	 62.37	0	3651650..3652021	-	123	148824462	-	TBFG_13289	-	transcriptional regulatory protein whib-like whiB2
3272	 67.07	0	3652321..3653316	+	331	148824463	-	TBFG_13290	-	LPPG:FO 2-phospho-L-lactate transferase
3273	 68.67	0	3653313..3654659	+	448	148824464	-	TBFG_13291	-	F420-0--gamma-glutamyl ligase
3274	 63.24	0	3654955..3656616	+	553	148824465	-	TBFG_13292	-	DNA methylase
3275	 65.28	0	3656676..3657755	-	359	148824466	-	TBFG_13293	-	D-alpha-D-mannose-1-phosphate guanylyltransferase manB
3276	 67.66	0	3657757..3658662	-	301	148824467	-	TBFG_13294	-	dTDP-RHA:A-D-GlcNAc-diphosphoryl polyprenol-A-3-L-rhamnosyl transferase wbbL1
3277	 69.07	+1	3658673..3659587	-	304	148824468	-	TBFG_13295	-	dTDP-6-deoxy-L-lyxo-4-hexulose reductase rmlD
3278	 66.80	0	3659666..3661159	+	497	148824469	-	TBFG_13296	-	CPSA-related protein
3279	 68.41	0	3661198..3661887	+	229	148824470	-	TBFG_13297	-	hypothetical protein
3280	 64.89	0	3662012..3662293	+	93	148824471	-	TBFG_13298	-	hypothetical protein
3281	 68.71	0	3662304..3664460	+	718	148824472	-	TBFG_13299	-	metal cation transporter P-type ATPase C ctpC
3282	 69.06	+1	3664457..3665125	-	222	148824473	-	TBFG_13300	-	integral membrane protein
3283	 65.23	0	3665226..3666410	+	394	148824474	-	TBFG_13301	-	hypothetical protein
3284	 64.23	0	3666415..3668709	+	764	148824475	-	TBFG_13302	-	transmembrane carbonic anhydrase
3285	 64.19	0	3668698..3669867	-	389	148824476	-	TBFG_13303	-	acyl-CoA dehydrogenase fadE25
3286	 71.05	+1	3669892..3670416	-	174	148824477	-	TBFG_13304	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
3287	 68.53	0	3670413..3671702	-	429	148824479	-	TBFG_13305	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3288	 61.78	-1	3671656..3672474	+	272	148824478	-	TBFG_13306	-	transmembrane protein
3289	 60.31	-1	3672429..3672947	-	172	148824480	-	TBFG_13307	-	transmembrane protein
3290	 67.67	0	3672990..3673790	-	266	148824481	-	TBFG_13308	-	bifunctional protein birA: biotin operon repressor + biotin-[acetyl-CoA-carboxylase] synthetase
3291	 64.30	0	3673840..3675486	+	548	148824482	-	TBFG_13309	-	propionyl-CoA carboxylase beta subunit 5 accD5
3292	 61.57	-1	3675467..3675937	+	156	148824483	-	TBFG_13310	-	hypothetical protein
3293	 65.02	0	3675934..3676602	+	222	148824484	-	TBFG_13311	-	Maf-like protein
3294	 64.21	0	3676643..3677536	+	297	148824485	-	TBFG_13312	-	thiosulfate sulfurtransferase sseA
3295	 67.59	0	3677533..3677964	+	143	148824486	-	TBFG_13313	-	hypothetical protein
3296	 67.94	0	3678072..3679874	+	600	148824487	-	TBFG_13314	-	bifunctional protein acetyl-/propionyl-coenzyme A carboxylase alpha subunit accA3: biotin carboxylase + biotin carboxyl carrier protein
3297	 64.50	0	3679884..3680669	-	261	148824488	-	TBFG_13315	-	RNA polymerase sigma factor SigF
3298	 65.07	0	3680666..3681292	-	208	148824489	-	TBFG_13316	-	anti-sigma factor rsbW (sigma negative effector)
3299	 61.84	-1	3681301..3681714	-	137	148824490	-	TBFG_13317	-	hypothetical protein
3300	 67.72	0	3681749..3682126	-	125	148824491	-	TBFG_13318	-	hypothetical protein
3301	 64.74	0	3682160..3683509	-	449	148824492	-	TBFG_13319	-	L-lysine aminotransferase
3302	 61.15	-1	3683560..3684012	-	150	148824493	-	TBFG_13320	-	AsnC family transcriptional regulator
3303	 66.51	0	3684043..3685290	+	415	148824494	-	TBFG_13321	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.