IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3175	 59.63	-1	3554005..3554487	-	160	148824366	-	TBFG_13193	-	hypothetical protein
3176	 66.83	0	3554566..3555168	-	200	148824367	-	TBFG_13194	-	TetR/AcrR family transcriptional regulator
3177	 64.97	0	3555261..3555968	+	235	148824368	-	TBFG_13195	-	short chain dehydrogenase
3178	 68.62	0	3555983..3557470	+	495	148824369	-	TBFG_13196	-	amidase
3179	 67.29	0	3557467..3558423	-	318	148824370	-	TBFG_13197	-	epoxide hydrolase mesT
3180	 62.60	0	3558570..3559430	+	286	148824371	-	TBFG_13198	-	peroxidase
3181	 62.50	0	3559561..3559920	+	119	148824372	-	TBFG_13199	-	hypothetical protein
3182	 61.22	-1	3560160..3560453	+	97	148824373	-	TBFG_13200	-	hypothetical protein
3183	 62.34	0	3560666..3562030	+	454	148824374	-	TBFG_13201	-	hypothetical protein
3184	 69.43	+1	3562377..3562811	-	144	148824375	-	TBFG_13202	-	hypothetical protein
3185	 64.68	0	3562814..3563266	-	150	148824376	-	TBFG_13203	-	hypothetical protein
3186	 63.77	0	3563497..3563841	+	114	148824377	-	TBFG_13204	-	hypothetical protein
3187	 69.70	+1	3563838..3564167	+	109	148824378	-	TBFG_13205	-	transcriptional regulator
3188	 63.84	0	3564305..3565189	-	294	148824379	-	TBFG_13206	-	transposase
3189	 65.75	0	3565240..3565566	-	108	148824380	-	TBFG_13207	-	transposase
3190	 67.53	0	3566063..3566410	+	115	148824381	-	TBFG_13208	-	hypothetical protein
3191	 64.90	0	3566407..3567027	+	206	148824382	-	TBFG_13209	-	hypothetical protein
3192	 60.66	-1	3567187..3568452	-	421	148824383	-	TBFG_13210	-	hypothetical protein
3193	 63.63	0	3569076..3570260	-	394	148824384	-	TBFG_13211	-	transposase
3194	 68.18	0	3571328..3571789	+	153	148824385	-	TBFG_13212	-	hypothetical protein
3195	 61.93	-1	3571959..3574937	-	992	148824386	-	TBFG_13213	-	hypothetical protein
3196	 64.32	0	3575029..3576051	-	340	148824387	-	TBFG_13214	-	hypothetical protein
3197	 67.16	0	3576129..3577547	+	472	148824388	-	TBFG_13215	-	hypothetical protein
3198	 66.89	0	3577553..3578452	+	299	148824389	-	TBFG_13216	-	hypothetical protein
3199	 60.70	-1	3578461..3578661	-	66	148824390	-	TBFG_13217	-	hypothetical protein
3200	 64.14	0	3578789..3580132	+	447	148824391	-	TBFG_13218	-	ATP-binding protein ABC transporter
3201	 62.72	0	3580166..3580444	-	92	148824392	-	TBFG_13219	-	transcriptional regulatory protein whib-like whiB7
3202	 67.43	0	3580874..3582976	-	700	148824393	-	TBFG_13220	-	ATP-dependent DNA helicase II uvrD2
3203	 58.04	-2	3583100..3583354	+	84	148824394	-	TBFG_13221	-	glutaredoxin protein
3204	 66.56	0	3583367..3584308	-	313	148824395	nudC	TBFG_13222	-	NADH pyrophosphatase
3205	 64.98	0	3584367..3585434	-	355	148824396	-	TBFG_13223	-	transmembrane cation transporter
3206	 69.00	+1	3585496..3588801	-	1101	148824397	-	TBFG_13224	-	ATP-dependent DNA helicase
3207	 70.27	+1	3588798..3591965	-	1055	148824398	-	TBFG_13225	-	ATP-dependent DNA helicase
3208	 66.67	0	3592042..3592260	+	72	148824399	-	TBFG_13226	-	hypothetical protein
3209	 68.70	0	3592291..3593076	+	261	148824400	-	TBFG_13227	-	lipase lipV
3210	 66.34	0	3593079..3593384	+	101	148824401	-	TBFG_13228	-	DNA-methyltransferase
3211	 68.49	0	3593391..3594269	-	292	148824402	-	TBFG_13229	-	hypothetical protein
3212	 63.27	0	3594296..3595474	-	392	148824403	-	TBFG_13230	-	molybdopterin biosynthesis-like protein MoeZ
3213	 63.73	0	3595565..3596551	-	328	148824404	-	TBFG_13231	-	hypothetical protein
3214	 63.90	0	3596768..3597454	+	228	148824405	-	TBFG_13232	-	TetR family transcriptional regulator
3215	 64.84	0	3597441..3597713	-	90	148824406	-	TBFG_13233	-	hypothetical protein
3216	 70.00	+1	3597920..3598249	-	109	148824408	-	TBFG_13234	-	hrpA-like helicase
3217	 66.31	0	3598038..3598598	+	186	148824407	-	TBFG_13235	-	threonine and proline rich protein
3218	 64.66	0	3598608..3599303	-	231	148824409	-	TBFG_13236	-	hypothetical protein
3219	 67.49	0	3599562..3601145	+	527	148824410	-	TBFG_13237	-	ATP-dependent RNA helicase rhlE
3220	 67.89	0	3601158..3602381	+	407	148824411	-	TBFG_13238	-	hypothetical protein
3221	 64.42	0	3602457..3603257	-	266	148824412	-	TBFG_13239	-	hypothetical protein
3222	 64.77	0	3603336..3604022	+	228	148824413	-	TBFG_13240	-	acid phosphatase
3223	 66.40	0	3604019..3605137	+	372	148824414	-	TBFG_13241	-	isochorismate synthase entC
3224	 63.06	0	3605285..3605617	+	110	148824415	-	TBFG_13242	-	acetyltransferase
3225	 69.91	+1	3605569..3606000	-	143	148824416	-	TBFG_13243	-	integral membrane protein
3226	 65.94	0	3606233..3607198	+	321	148824417	-	TBFG_13244	-	hypothetical protein
3227	 63.53	0	3607491..3607745	+	84	148824418	-	TBFG_13245	-	transcriptional regulatory protein whib-like whiB1
3228	 64.67	0	3607807..3609312	-	501	148824419	-	TBFG_13246	-	two component sensor kinase
3229	 60.42	-1	3609329..3609568	-	79	148824420	-	TBFG_13247	-	putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
3230	 66.99	0	3609829..3610134	-	101	148824421	-	TBFG_13248	-	anti-sigma factor
3231	 67.39	0	3610131..3610682	-	183	148824422	-	TBFG_13249	-	hypothetical protein
3232	 61.98	-1	3610679..3611446	-	255	148824423	-	TBFG_13250	-	RNA polymerase sigma factor RpoE
3233	 65.25	0	3611629..3612477	+	282	148824424	-	TBFG_13251	-	short chain dehydrogenase
3234	 69.84	+1	3612413..3612601	+	62	148824425	-	TBFG_13252	-	hypothetical protein
3235	 67.12	0	3612579..3612797	+	72	148824426	-	TBFG_13253	-	hypothetical protein
3236	 66.46	0	3612794..3614218	-	474	148824427	-	TBFG_13254	-	transferase
3237	 67.98	0	3614342..3615100	-	252	148824428	-	TBFG_13255	-	hypothetical protein
3238	 70.44	+1	3615155..3616507	+	450	148824429	-	TBFG_13256	-	3-phosphoshikimate 1-carboxyvinyltransferase
3239	 69.99	+1	3616504..3617496	+	330	148824430	-	TBFG_13257	-	hypothetical protein
3240	 61.84	-1	3617529..3618812	-	427	148824431	-	TBFG_13258	-	linoleoyl-CoA desaturase
3241	 66.84	0	3618890..3620032	-	380	148824432	-	TBFG_13259	-	oxidoreductase
3242	 66.67	0	3620142..3620651	-	169	148824433	-	TBFG_13260	-	hypothetical protein
3243	 58.67	-2	3620648..3621535	-	295	148824434	-	TBFG_13261	-	transcriptional regulatory protein pvdS
3244	 62.52	0	3621559..3622161	-	200	148824435	-	TBFG_13262	-	hypothetical protein
3245	 64.22	0	3622152..3622967	-	271	148824436	-	TBFG_13263	-	hypothetical protein
3246	 70.09	+1	3623078..3623719	+	213	148824437	-	TBFG_13264	-	hypothetical protein
3247	 65.37	0	3623737..3624894	-	385	148824438	-	TBFG_13265	-	integral membrane transport protein
3248	 65.01	0	3624899..3625381	-	160	148824439	-	TBFG_13266	-	hypothetical protein
3249	 61.09	-1	3625442..3626176	-	244	148824440	-	TBFG_13267	-	integral membrane protein
3250	 66.92	0	3626235..3629381	-	1048	148824441	-	TBFG_13268	-	transmembrane transport protein
3251	 64.42	0	3629460..3632309	-	949	148824442	-	TBFG_13269	-	preprotein translocase subunit SecA
3252	 62.95	0	3632388..3633032	-	214	148824443	-	TBFG_13270	-	hypothetical protein
3253	 71.50	+1	3633348..3633989	-	213	148824444	-	TBFG_13271	-	hypothetical protein
3254	 66.90	0	3634027..3634869	-	280	148824445	-	TBFG_13272	-	hypothetical protein
3255	 67.58	0	3634937..3636688	-	583	148824446	-	TBFG_13273	-	lipoprotein LpqB
3256	 66.61	0	3636688..3638391	-	567	148824447	-	TBFG_13274	-	two component system sensor transduction histidine kinase mtrB
3257	 62.01	-1	3638441..3639127	-	228	148824448	-	TBFG_13275	-	two component system sensor transduction transcriptional regulatory protein mtrA
3258	 68.06	0	3639197..3639841	-	214	148824449	-	TBFG_13276	-	thymidylate kinase
3259	 63.78	0	3639938..3641425	-	495	148824450	-	TBFG_13277	-	S-adenosyl-L-homocysteine hydrolase
3260	 64.62	0	3641530..3642165	-	211	148824451	-	TBFG_13278	-	TetR family transcriptional regulator
3261	 61.75	-1	3642162..3642344	-	60	148824452	-	TBFG_13279	-	rubredoxin rubB
3262	 62.50	0	3642349..3642516	-	55	148824453	-	TBFG_13280	-	rubredoxin rubA
3263	 64.11	0	3642516..3643766	-	416	148824454	-	TBFG_13281	-	transmembrane alkane 1-monooxygenase alkB
3264	 64.65	0	3643875..3645362	-	495	148824455	-	TBFG_13282	-	cationic amino acid transport integral membrane protein
3265	 64.94	0	3645453..3646841	+	462	148824456	-	TBFG_13283	-	hypothetical protein
3266	 66.83	0	3646819..3648045	-	408	148824457	-	TBFG_13284	-	mannose-6-phosphate isomerase manA
3267	 71.37	+1	3648053..3649093	-	346	148824458	-	TBFG_13285	-	hypothetical protein
3268	 64.81	0	3649090..3650487	-	465	148824459	manB	TBFG_13286	-	phosphomannomutase/phosphoglucomutase
3269	 71.75	+1	3650589..3651080	-	163	148824460	-	TBFG_13287	-	hypothetical protein
3270	 66.48	0	3651095..3651622	+	175	148824461	-	TBFG_13288	-	hypothetical protein
3271	 62.37	0	3651650..3652021	-	123	148824462	-	TBFG_13289	-	transcriptional regulatory protein whib-like whiB2
3272	 67.07	0	3652321..3653316	+	331	148824463	-	TBFG_13290	-	LPPG:FO 2-phospho-L-lactate transferase
3273	 68.67	0	3653313..3654659	+	448	148824464	-	TBFG_13291	-	F420-0--gamma-glutamyl ligase
3274	 63.24	0	3654955..3656616	+	553	148824465	-	TBFG_13292	-	DNA methylase
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.