IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3126	 56.38	-2	3502605..3503498	+	297	148824317	-	TBFG_13144	-	transcriptional regulator
3127	 66.24	0	3503599..3504774	-	391	148824318	-	TBFG_13145	-	PPE family protein
3128	 59.05	-1	3504931..3505245	-	104	148824319	-	TBFG_13146	-	hypothetical protein
3129	 63.00	0	3505270..3506304	+	344	148824320	-	TBFG_13147	-	hypothetical protein
3130	 64.39	0	3506291..3506641	-	116	148824321	-	TBFG_13148	-	hypothetical protein
3131	 60.27	-1	3506723..3507316	-	197	148824322	-	TBFG_13149	-	hypothetical protein
3132	 65.17	0	3507783..3508115	+	110	148824323	-	TBFG_13150	-	hypothetical protein
3133	 62.21	0	3508098..3509489	-	463	148824324	-	TBFG_13151	-	hypothetical protein
3134	 66.77	0	3509674..3510672	+	332	148824325	-	TBFG_13152	-	hypothetical protein
3135	 63.96	0	3510652..3512388	-	578	148824326	-	TBFG_13153	-	two component system sensor histidine kinase devS
3136	 63.15	0	3512385..3513038	-	217	148824327	-	TBFG_13154	-	two component system transcriptional regulatory protein DevR
3137	 67.66	0	3513066..3513872	-	268	148824328	-	TBFG_13155	-	hypothetical protein
3138	 65.41	0	3514298..3514855	+	185	148824329	-	TBFG_13156	-	PPE family protein
3139	 66.93	0	3514917..3516059	+	380	148824330	-	TBFG_13157	-	PPE family protein
3140	 67.05	0	3516516..3517298	+	260	148824331	-	TBFG_13158	-	monophosphatase
3141	 61.89	-1	3517318..3518406	+	362	148824332	-	TBFG_13159	-	pyruvate formate lyase activating protein pflA
3142	 67.09	0	3518486..3519892	+	468	148824333	-	TBFG_13160	-	acyl-CoA dehydrogenase fadE24
3143	 62.52	0	3519913..3521118	+	401	148824334	-	TBFG_13161	-	acyl-CoA dehydrogenase fadE23
3144	 67.18	0	3521218..3522189	+	323	148824335	-	TBFG_13162	-	NADPH quinone oxidoreductase fadB4
3145	 59.44	-1	3522241..3522669	-	142	148824336	-	TBFG_13163	-	hypothetical protein
3146	 66.17	0	3522777..3523178	+	133	148824337	-	TBFG_13164	-	response regulator
3147	 68.62	0	3523211..3524440	-	409	148824338	-	TBFG_13165	-	PPE family protein
3148	 65.24	0	3524700..3525191	+	163	148824339	-	TBFG_13166	-	NADH dehydrogenase subunit A
3149	 62.16	0	3525200..3525754	+	184	148824340	-	TBFG_13167	-	NADH dehydrogenase subunit B
3150	 66.39	0	3525751..3526461	+	236	148824341	-	TBFG_13168	-	NADH dehydrogenase subunit C
3151	 63.34	0	3526461..3527783	+	440	148824342	-	TBFG_13169	-	NADH dehydrogenase subunit D
3152	 67.98	0	3527780..3528538	+	252	148824343	-	TBFG_13170	-	NADH dehydrogenase subunit E
3153	 65.92	0	3528535..3529872	+	445	148824344	-	TBFG_13171	-	NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase chain F)
3154	 68.57	0	3529869..3532289	+	806	148824345	-	TBFG_13172	-	NADH dehydrogenase subunit G
3155	 61.92	-1	3532396..3533637	+	413	148824346	-	TBFG_13173	-	NADH dehydrogenase subunit H
3156	 63.93	0	3533609..3534265	+	218	148824347	-	TBFG_13174	-	NADH dehydrogenase subunit I
3157	 65.15	0	3534262..3535050	+	262	148824348	-	TBFG_13175	-	NADH dehydrogenase subunit J
3158	 57.67	-2	3535047..3535346	+	99	148824349	-	TBFG_13176	-	NADH dehydrogenase subunit K
3159	 65.51	0	3535357..3537258	+	633	148824350	-	TBFG_13177	-	NADH dehydrogenase subunit L
3160	 64.26	0	3537255..3538916	+	553	148824351	-	TBFG_13178	-	NADH dehydrogenase subunit M
3161	 65.48	0	3538913..3540508	+	531	148824352	-	TBFG_13179	-	NADH dehydrogenase subunit N
3162	 61.59	-1	3540514..3542286	-	590	148824353	-	TBFG_13180	-	PPE family protein
3163	 65.73	0	3542461..3543102	-	213	148824354	-	TBFG_13181	-	TetR family transcriptional regulator
3164	 62.40	0	3543113..3544261	-	382	148824355	-	TBFG_13182	-	dioxygenase
3165	 66.44	0	3544331..3544768	-	145	148824356	-	TBFG_13183	-	hypothetical protein
3166	 65.88	0	3544765..3546036	-	423	148824357	-	TBFG_13184	-	hypothetical protein
3167	 62.72	0	3546066..3547028	-	320	148824358	-	TBFG_13185	-	methanol dehydrogenase transcriptional regulatory protein moxR3
3168	 62.94	0	3547036..3547518	-	160	148824359	-	TBFG_13186	-	hypothetical protein
3169	 65.52	0	3547515..3548474	-	319	148824360	-	TBFG_13187	-	hypothetical protein
3170	 68.90	+1	3548554..3549180	-	208	148824361	-	TBFG_13188	-	TetR family transcriptional regulator
3171	 64.29	0	3549225..3550361	+	378	148824362	-	TBFG_13189	-	hypothetical protein
3172	 66.84	0	3550361..3551485	+	374	148824363	-	TBFG_13190	-	hypothetical protein
3173	 68.28	0	3551610..3552974	+	454	148824364	-	TBFG_13191	-	flavin-containing monoamine oxidase aofH
3174	 68.00	0	3552969..3553868	-	299	148824365	-	TBFG_13192	-	non-heme haloperoxidase hpx
3175	 59.63	-1	3554005..3554487	-	160	148824366	-	TBFG_13193	-	hypothetical protein
3176	 66.83	0	3554566..3555168	-	200	148824367	-	TBFG_13194	-	TetR/AcrR family transcriptional regulator
3177	 64.97	0	3555261..3555968	+	235	148824368	-	TBFG_13195	-	short chain dehydrogenase
3178	 68.62	0	3555983..3557470	+	495	148824369	-	TBFG_13196	-	amidase
3179	 67.29	0	3557467..3558423	-	318	148824370	-	TBFG_13197	-	epoxide hydrolase mesT
3180	 62.60	0	3558570..3559430	+	286	148824371	-	TBFG_13198	-	peroxidase
3181	 62.50	0	3559561..3559920	+	119	148824372	-	TBFG_13199	-	hypothetical protein
3182	 61.22	-1	3560160..3560453	+	97	148824373	-	TBFG_13200	-	hypothetical protein
3183	 62.34	0	3560666..3562030	+	454	148824374	-	TBFG_13201	-	hypothetical protein
3184	 69.43	+1	3562377..3562811	-	144	148824375	-	TBFG_13202	-	hypothetical protein
3185	 64.68	0	3562814..3563266	-	150	148824376	-	TBFG_13203	-	hypothetical protein
3186	 63.77	0	3563497..3563841	+	114	148824377	-	TBFG_13204	-	hypothetical protein
3187	 69.70	+1	3563838..3564167	+	109	148824378	-	TBFG_13205	-	transcriptional regulator
3188	 63.84	0	3564305..3565189	-	294	148824379	-	TBFG_13206	-	transposase
3189	 65.75	0	3565240..3565566	-	108	148824380	-	TBFG_13207	-	transposase
3190	 67.53	0	3566063..3566410	+	115	148824381	-	TBFG_13208	-	hypothetical protein
3191	 64.90	0	3566407..3567027	+	206	148824382	-	TBFG_13209	-	hypothetical protein
3192	 60.66	-1	3567187..3568452	-	421	148824383	-	TBFG_13210	-	hypothetical protein
3193	 63.63	0	3569076..3570260	-	394	148824384	-	TBFG_13211	-	transposase
3194	 68.18	0	3571328..3571789	+	153	148824385	-	TBFG_13212	-	hypothetical protein
3195	 61.93	-1	3571959..3574937	-	992	148824386	-	TBFG_13213	-	hypothetical protein
3196	 64.32	0	3575029..3576051	-	340	148824387	-	TBFG_13214	-	hypothetical protein
3197	 67.16	0	3576129..3577547	+	472	148824388	-	TBFG_13215	-	hypothetical protein
3198	 66.89	0	3577553..3578452	+	299	148824389	-	TBFG_13216	-	hypothetical protein
3199	 60.70	-1	3578461..3578661	-	66	148824390	-	TBFG_13217	-	hypothetical protein
3200	 64.14	0	3578789..3580132	+	447	148824391	-	TBFG_13218	-	ATP-binding protein ABC transporter
3201	 62.72	0	3580166..3580444	-	92	148824392	-	TBFG_13219	-	transcriptional regulatory protein whib-like whiB7
3202	 67.43	0	3580874..3582976	-	700	148824393	-	TBFG_13220	-	ATP-dependent DNA helicase II uvrD2
3203	 58.04	-2	3583100..3583354	+	84	148824394	-	TBFG_13221	-	glutaredoxin protein
3204	 66.56	0	3583367..3584308	-	313	148824395	nudC	TBFG_13222	-	NADH pyrophosphatase
3205	 64.98	0	3584367..3585434	-	355	148824396	-	TBFG_13223	-	transmembrane cation transporter
3206	 69.00	+1	3585496..3588801	-	1101	148824397	-	TBFG_13224	-	ATP-dependent DNA helicase
3207	 70.27	+1	3588798..3591965	-	1055	148824398	-	TBFG_13225	-	ATP-dependent DNA helicase
3208	 66.67	0	3592042..3592260	+	72	148824399	-	TBFG_13226	-	hypothetical protein
3209	 68.70	0	3592291..3593076	+	261	148824400	-	TBFG_13227	-	lipase lipV
3210	 66.34	0	3593079..3593384	+	101	148824401	-	TBFG_13228	-	DNA-methyltransferase
3211	 68.49	0	3593391..3594269	-	292	148824402	-	TBFG_13229	-	hypothetical protein
3212	 63.27	0	3594296..3595474	-	392	148824403	-	TBFG_13230	-	molybdopterin biosynthesis-like protein MoeZ
3213	 63.73	0	3595565..3596551	-	328	148824404	-	TBFG_13231	-	hypothetical protein
3214	 63.90	0	3596768..3597454	+	228	148824405	-	TBFG_13232	-	TetR family transcriptional regulator
3215	 64.84	0	3597441..3597713	-	90	148824406	-	TBFG_13233	-	hypothetical protein
3216	 70.00	+1	3597920..3598249	-	109	148824408	-	TBFG_13234	-	hrpA-like helicase
3217	 66.31	0	3598038..3598598	+	186	148824407	-	TBFG_13235	-	threonine and proline rich protein
3218	 64.66	0	3598608..3599303	-	231	148824409	-	TBFG_13236	-	hypothetical protein
3219	 67.49	0	3599562..3601145	+	527	148824410	-	TBFG_13237	-	ATP-dependent RNA helicase rhlE
3220	 67.89	0	3601158..3602381	+	407	148824411	-	TBFG_13238	-	hypothetical protein
3221	 64.42	0	3602457..3603257	-	266	148824412	-	TBFG_13239	-	hypothetical protein
3222	 64.77	0	3603336..3604022	+	228	148824413	-	TBFG_13240	-	acid phosphatase
3223	 66.40	0	3604019..3605137	+	372	148824414	-	TBFG_13241	-	isochorismate synthase entC
3224	 63.06	0	3605285..3605617	+	110	148824415	-	TBFG_13242	-	acetyltransferase
3225	 69.91	+1	3605569..3606000	-	143	148824416	-	TBFG_13243	-	integral membrane protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.