IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3053	 62.92	0	3426429..3426668	-	79	148824244	-	TBFG_13069	-	glutaredoxin-like electron transport protein nrdH
3054	 57.04	-2	3426646..3427050	-	134	148824245	-	TBFG_13070	-	hypothetical protein
3055	 65.59	0	3427131..3427685	-	184	148824246	-	TBFG_13071	-	hypothetical protein
3056	 67.32	0	3427777..3428391	+	204	148824247	-	TBFG_13072	-	TetR family transcriptional regulator
3057	 62.92	0	3428401..3429441	+	346	148824248	-	TBFG_13073	-	DNA polymerase IV
3058	 64.70	0	3429495..3430358	-	287	148824249	-	TBFG_13074	-	short chain dehydrogenase
3059	 63.44	0	3430422..3431102	-	226	148824250	-	TBFG_13075	-	TetR family transcriptional regulator
3060	 63.02	0	3431188..3432666	+	492	148824251	-	TBFG_13076	-	cytochrome P450 136 cyp136
3061	 65.51	0	3433437..3434909	-	490	148824252	-	TBFG_13077	-	GntR family transcriptional regulator
3062	 66.02	0	3435026..3437191	-	721	148824253	-	TBFG_13078	-	acyl-CoA dehydrogenase fadE22
3063	 67.98	0	3437348..3438871	+	507	148824254	ligB	TBFG_13079	-	ATP-dependent DNA ligase
3064	 64.38	0	3439007..3441283	+	758	148824255	-	TBFG_13080	-	carbon starvation protein A cstA
3065	 60.33	-1	3441589..3442014	-	141	148824256	-	TBFG_13081	-	integral membrane protein
3066	 59.88	-1	3442151..3442474	+	107	148824257	-	TBFG_13082	-	multi-drug transport integral membrane protein mmr
3067	 68.97	+1	3442471..3443079	+	202	148824258	-	TBFG_13083	-	DeoR family transcriptional regulator
3068	 65.94	0	3443192..3443602	+	136	148824259	-	TBFG_13084	-	hypothetical protein
3069	 66.30	0	3443743..3445386	-	547	148824260	-	TBFG_13085	-	phosphoglucomutase
3070	 63.91	0	3445456..3445854	+	132	148824261	-	TBFG_13086	-	transmembrane protein
3071	 62.99	0	3445851..3446231	+	126	148824262	-	TBFG_13087	-	integral membrane protein
3072	 64.41	0	3446228..3447337	+	369	148824263	-	TBFG_13088	-	hypothetical protein
3073	 66.47	0	3447562..3448077	-	171	148824264	-	TBFG_13089	-	hypothetical protein
3074	 66.39	0	3448093..3448449	-	118	148824265	-	TBFG_13090	-	hypothetical protein
3075	 69.41	+1	3448543..3449817	+	424	148824266	-	TBFG_13091	-	hypothetical protein
3076	 64.07	0	3449814..3450737	-	307	148824267	-	TBFG_13092	-	hypothetical protein
3077	 65.83	0	3450836..3451312	+	158	148824268	-	TBFG_13093	-	hypothetical protein
3078	 67.44	0	3451305..3453116	+	603	148824269	-	TBFG_13094	-	hydrolase
3079	 63.68	0	3453117..3453518	+	133	148824270	-	TBFG_13095	-	hydroxylaminobenzene mutase hab
3080	 64.73	0	3453534..3454361	-	275	148824271	-	TBFG_13096	-	hypothetical protein
3081	 67.87	0	3454420..3457752	-	1110	148824272	-	TBFG_13097	-	serine/threonine-protein kinase transcriptional regulatory protein pknK
3082	 64.81	0	3457804..3459042	+	412	148824273	-	TBFG_13098	-	hypothetical protein
3083	 66.86	0	3459168..3460190	-	340	148824274	-	TBFG_13099	-	virulence-regulating transcriptional regulator VirS
3084	 65.19	0	3460268..3461755	+	495	148824275	-	TBFG_13100	-	monooxygenase
3085	 69.15	+1	3461761..3462687	+	308	148824276	-	TBFG_13101	-	acetyl-hydrolase/esterase lipR
3086	 66.31	0	3462684..3463514	+	276	148824277	-	TBFG_13102	-	short-chain type dehydrogenase/reductase
3087	 66.76	0	3463545..3464651	+	368	148824278	-	TBFG_13103	-	zinc-type alcohol dehydrogenase adhD (aldehyde reductase)
3088	 69.97	+1	3464686..3466107	+	473	148824279	-	TBFG_13104	-	hypothetical protein
3089	 65.89	0	3466104..3467528	+	474	148824280	-	TBFG_13105	-	hypothetical protein
3090	 64.75	0	3467525..3469036	+	503	148824281	-	TBFG_13106	-	fatty-acid-CoA ligase fadD13
3091	 62.73	0	3469975..3470862	+	295	148824282	-	TBFG_13107	-	hypothetical protein
3092	 69.39	+1	3470880..3472571	+	563	148824283	-	TBFG_13108	-	hypothetical protein
3093	 66.56	0	3472578..3473498	-	306	148824284	-	TBFG_13109	-	integral membrane protein
3094	 70.15	+1	3473524..3474528	-	334	148824285	-	TBFG_13110	-	oxidoreductase
3095	 68.61	0	3474525..3475655	-	376	148824286	-	TBFG_13111	-	hypothetical protein
3096	 65.20	0	3475737..3476213	+	158	148824287	-	TBFG_13112	-	transcriptional regulator
3097	 64.12	0	3476311..3477450	+	379	148824288	-	TBFG_13113	-	hypothetical protein
3098	 62.40	0	3477542..3478855	-	437	148824289	-	TBFG_13114	-	hypothetical protein
3099	 60.49	-1	3478974..3479426	-	150	148824290	-	TBFG_13115	-	hypothetical protein
3100	 66.78	0	3480177..3481028	-	283	148824291	-	TBFG_13116	-	hypothetical protein
3101	 64.18	0	3481065..3481547	-	160	148824292	smpB	TBFG_13117	-	SsrA-binding protein
3102	 59.06	-1	3481550..3482443	-	297	148824293	-	TBFG_13118	-	cell division protein ftsX
3103	 61.88	-1	3482444..3483133	-	229	148824294	-	TBFG_13119	-	cell division ATP-binding protein ftsE
3104	 68.26	0	3483177..3483614	-	145	148824295	-	TBFG_13120	-	hypothetical protein
3105	 65.91	0	3483616..3484542	-	308	148824296	-	TBFG_13121	-	transmembrane protein
3106	 65.35	0	3484532..3485668	-	378	148824297	prfB	TBFG_13122	-	peptide chain release factor 2
3107	 66.16	0	3485772..3487142	+	456	148824298	-	TBFG_13123	-	NADPH:adrenodoxin oxidoreductase fprA
3108	 67.55	0	3487143..3488726	-	527	148824299	-	TBFG_13124	-	alkyldihydroxyacetonephosphate synthase agpS
3109	 60.54	-1	3488825..3489265	+	146	148824300	-	TBFG_13125	-	hypothetical protein
3110	 55.09	-2	3489414..3490493	+	359	148824301	-	TBFG_13126	-	molybdenum cofactor biosynthesis protein A moaA1
3111	 56.82	-2	3490544..3490939	+	131	148824302	-	TBFG_13127	-	pterin-4-alpha-carbinolamine dehydratase moaB1
3112	 58.28	-2	3490936..3491448	+	170	148824303	moaC	TBFG_13128	-	molybdenum cofactor biosynthesis protein C
3113	 53.97	-2	3491465..3491716	+	83	148824304	-	TBFG_13129	-	molybdenum cofactor biosynthesis protein D moaD1
3114	 65.75	0	3492190..3492516	+	108	148824305	-	TBFG_13131	-	transposase
3115	 63.84	0	3492567..3493451	+	294	148824306	-	TBFG_13132	-	transposase
3116	 59.70	-1	3493882..3494412	+	176	148824307	-	TBFG_13134	-	hypothetical protein
3117	 65.75	0	3494511..3495821	+	436	148824308	-	TBFG_13135	-	transposase
3118	 58.46	-2	3495899..3497068	+	389	148824309	-	TBFG_13136	-	molybdenum cofactor biosynthesis protein moeB2
3119	 61.75	-1	3497097..3497930	+	277	148824310	-	TBFG_13137	-	thiosulfate sulfurtransferase cysA3
3120	 68.65	0	3497932..3498234	+	100	148824311	-	TBFG_13138	-	hypothetical protein
3121	 57.88	-2	3498255..3498698	+	147	148824312	-	TBFG_13139	-	molybdenum cofactor biosynthesis protein E moaE1
3122	 65.67	0	3498695..3499297	+	200	148824313	-	TBFG_13140	-	hypothetical protein
3123	 59.77	-1	3499632..3500834	+	400	148824314	-	TBFG_13141	-	cytochrome P450 141 cyp141
3124	 66.45	0	3501212..3501682	+	156	148824315	-	TBFG_13142	-	hypothetical protein
3125	 68.75	0	3501707..3502186	+	159	148824316	-	TBFG_13143	-	hypothetical protein
3126	 56.38	-2	3502605..3503498	+	297	148824317	-	TBFG_13144	-	transcriptional regulator
3127	 66.24	0	3503599..3504774	-	391	148824318	-	TBFG_13145	-	PPE family protein
3128	 59.05	-1	3504931..3505245	-	104	148824319	-	TBFG_13146	-	hypothetical protein
3129	 63.00	0	3505270..3506304	+	344	148824320	-	TBFG_13147	-	hypothetical protein
3130	 64.39	0	3506291..3506641	-	116	148824321	-	TBFG_13148	-	hypothetical protein
3131	 60.27	-1	3506723..3507316	-	197	148824322	-	TBFG_13149	-	hypothetical protein
3132	 65.17	0	3507783..3508115	+	110	148824323	-	TBFG_13150	-	hypothetical protein
3133	 62.21	0	3508098..3509489	-	463	148824324	-	TBFG_13151	-	hypothetical protein
3134	 66.77	0	3509674..3510672	+	332	148824325	-	TBFG_13152	-	hypothetical protein
3135	 63.96	0	3510652..3512388	-	578	148824326	-	TBFG_13153	-	two component system sensor histidine kinase devS
3136	 63.15	0	3512385..3513038	-	217	148824327	-	TBFG_13154	-	two component system transcriptional regulatory protein DevR
3137	 67.66	0	3513066..3513872	-	268	148824328	-	TBFG_13155	-	hypothetical protein
3138	 65.41	0	3514298..3514855	+	185	148824329	-	TBFG_13156	-	PPE family protein
3139	 66.93	0	3514917..3516059	+	380	148824330	-	TBFG_13157	-	PPE family protein
3140	 67.05	0	3516516..3517298	+	260	148824331	-	TBFG_13158	-	monophosphatase
3141	 61.89	-1	3517318..3518406	+	362	148824332	-	TBFG_13159	-	pyruvate formate lyase activating protein pflA
3142	 67.09	0	3518486..3519892	+	468	148824333	-	TBFG_13160	-	acyl-CoA dehydrogenase fadE24
3143	 62.52	0	3519913..3521118	+	401	148824334	-	TBFG_13161	-	acyl-CoA dehydrogenase fadE23
3144	 67.18	0	3521218..3522189	+	323	148824335	-	TBFG_13162	-	NADPH quinone oxidoreductase fadB4
3145	 59.44	-1	3522241..3522669	-	142	148824336	-	TBFG_13163	-	hypothetical protein
3146	 66.17	0	3522777..3523178	+	133	148824337	-	TBFG_13164	-	response regulator
3147	 68.62	0	3523211..3524440	-	409	148824338	-	TBFG_13165	-	PPE family protein
3148	 65.24	0	3524700..3525191	+	163	148824339	-	TBFG_13166	-	NADH dehydrogenase subunit A
3149	 62.16	0	3525200..3525754	+	184	148824340	-	TBFG_13167	-	NADH dehydrogenase subunit B
3150	 66.39	0	3525751..3526461	+	236	148824341	-	TBFG_13168	-	NADH dehydrogenase subunit C
3151	 63.34	0	3526461..3527783	+	440	148824342	-	TBFG_13169	-	NADH dehydrogenase subunit D
3152	 67.98	0	3527780..3528538	+	252	148824343	-	TBFG_13170	-	NADH dehydrogenase subunit E
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.