IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3001	 62.52	0	3372333..3372839	-	168	148824192	ilvH	TBFG_13017	-	acetolactate synthase 3 regulatory subunit
3002	 67.64	0	3372839..3374695	-	618	148824193	-	TBFG_13018	-	acetolactate synthase 1 catalytic subunit
3003	 69.31	+1	3375018..3375395	+	125	148824194	-	TBFG_13019	-	low molecular weight protein antigen 6 cfp6
3004	 64.76	0	3375402..3376241	-	279	148824195	-	TBFG_13020	-	hypothetical protein
3005	 65.91	0	3376355..3377539	+	394	148824196	-	TBFG_13021	-	lipoprotein lppZ
3006	 62.44	0	3377545..3378159	-	204	148824197	-	TBFG_13022	-	oxidoreductase
3007	 61.54	-1	3378353..3378976	+	207	148824198	-	TBFG_13023	-	hypothetical protein
3008	 65.10	0	3378973..3380502	-	509	148824199	gatB	TBFG_13024	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
3009	 65.50	0	3380532..3381563	-	343	148824200	-	TBFG_13025	-	6-phosphofructokinase
3010	 70.03	+1	3381659..3383143	-	494	148824201	gatA	TBFG_13026	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
3011	 67.33	0	3383140..3383439	-	99	148824202	gatC	TBFG_13027	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
3012	 70.54	+1	3383458..3384180	+	240	148824203	-	TBFG_13028	-	hypothetical protein
3013	 69.12	+1	3384254..3386329	-	691	148824204	ligA	TBFG_13029	-	NAD-dependent DNA ligase LigA
3014	 70.41	+1	3386360..3387373	-	337	148824205	-	TBFG_13030	-	hypothetical protein
3015	 63.49	0	3387467..3388096	+	209	148824206	-	TBFG_13031	-	lipoprotein lpqA
3016	 66.12	0	3388199..3388561	-	120	148824207	-	TBFG_13032	-	EsxQ-like protein
3017	 63.68	0	3388648..3389952	-	434	148824208	-	TBFG_13033	-	PPE family protein
3018	 60.29	-1	3390038..3390241	-	67	148824209	-	TBFG_13034	-	PE family protein
3019	 61.51	-1	3390420..3390710	-	96	148824210	-	TBFG_13035	-	EsxR-like protein
3020	 62.59	0	3390745..3391038	-	97	148824211	-	TBFG_13036	-	Esat-6 like protein esxS
3021	 64.30	0	3391085..3392392	-	435	148824212	-	TBFG_13037	-	PPE family protein
3022	 66.67	0	3392389..3392802	-	137	148824213	-	TBFG_13038	-	PE family protein
3023	 66.51	0	3393085..3394332	-	415	148824214	-	TBFG_13039	-	transposase
3024	 66.21	0	3394495..3395598	-	367	148824215	trmU	TBFG_13040	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3025	 66.07	0	3395595..3396776	-	393	148824216	-	TBFG_13041	-	cysteine desulfurase iscS
3026	 68.52	0	3396873..3397787	-	304	148824217	-	TBFG_13042	-	hypothetical protein
3027	 67.61	0	3397784..3398524	-	246	148824218	-	TBFG_13043	-	hypothetical protein
3028	 69.38	+1	3398785..3399741	-	318	148824219	-	TBFG_13044	-	electron transfer flavoprotein alpha subunit fixB
3029	 65.17	0	3399780..3400580	-	266	148824220	-	TBFG_13045	-	electron transfer flavoprotein beta subunit fixA
3030	 66.30	0	3400811..3401635	+	274	148824221	-	TBFG_13046	-	hypothetical protein
3031	 68.69	0	3401632..3403212	+	526	148824222	-	TBFG_13047	-	hypothetical protein
3032	 68.03	0	3403244..3404488	+	414	148824223	-	TBFG_13048	-	transferase
3033	 60.66	-1	3405090..3405638	+	182	148824224	-	TBFG_13049	-	hypothetical protein
3034	 65.26	0	3405729..3406583	-	284	148824225	-	TBFG_13050	-	transferase
3035	 69.07	+1	3407089..3408171	+	360	148824226	-	TBFG_13051	-	hypothetical protein
3036	 63.45	0	3408168..3408851	-	227	148824227	-	TBFG_13052	-	secreted protein TB22.2
3037	 69.55	+1	3408924..3410000	-	358	148824228	-	TBFG_13053	-	hypothetical protein
3038	 66.36	0	3410135..3411118	-	327	148824229	-	TBFG_13054	-	hypothetical protein
3039	 69.80	+1	3411129..3411893	-	254	148824230	-	TBFG_13055	-	enoyl-CoA hydratase
3040	 68.28	0	3411902..3412768	-	288	148824231	-	TBFG_13056	-	hypothetical protein
3041	 67.94	0	3412765..3413628	-	287	148824232	-	TBFG_13057	-	ATP-binding protein ABC transporter
3042	 66.02	0	3413643..3414872	-	409	148824233	-	TBFG_13058	-	phosphoserine phosphatase
3043	 61.27	-1	3414910..3416631	-	573	148824234	-	TBFG_13059	-	cytochrome C oxidase subunit I ctaD
3044	 67.41	0	3416846..3417925	+	359	148824235	-	TBFG_13060	-	Fe(III)-dicitrate-binding periplasmic lipoprotein fecB
3045	 64.65	0	3417995..3419035	+	346	148824236	-	TBFG_13061	-	NADP-dependent alcohol dehydrogenase adhC
3046	 68.27	0	3419024..3419398	-	124	148824237	-	TBFG_13062	-	hypothetical protein
3047	 63.86	0	3419732..3420016	-	94	148824238	-	TBFG_13063	-	hypothetical protein
3048	 60.10	-1	3420114..3421088	-	324	148824239	nrdF	TBFG_13064	-	ribonucleotide-diphosphate reductase subunit beta
3049	 64.06	0	3421219..3422793	-	524	148824240	-	TBFG_13065	-	monooxygenase
3050	 65.05	0	3422927..3423667	-	246	148824241	-	TBFG_13066	-	AsnC family transcriptional regulator
3051	 58.86	-1	3423795..3425972	-	725	148824242	-	TBFG_13067	-	ribonucleotide-diphosphate reductase subunit alpha
3052	 61.59	-1	3425942..3426394	-	150	148824243	nrdI	TBFG_13068	-	ribonucleotide reductase stimulatory protein
3053	 62.92	0	3426429..3426668	-	79	148824244	-	TBFG_13069	-	glutaredoxin-like electron transport protein nrdH
3054	 57.04	-2	3426646..3427050	-	134	148824245	-	TBFG_13070	-	hypothetical protein
3055	 65.59	0	3427131..3427685	-	184	148824246	-	TBFG_13071	-	hypothetical protein
3056	 67.32	0	3427777..3428391	+	204	148824247	-	TBFG_13072	-	TetR family transcriptional regulator
3057	 62.92	0	3428401..3429441	+	346	148824248	-	TBFG_13073	-	DNA polymerase IV
3058	 64.70	0	3429495..3430358	-	287	148824249	-	TBFG_13074	-	short chain dehydrogenase
3059	 63.44	0	3430422..3431102	-	226	148824250	-	TBFG_13075	-	TetR family transcriptional regulator
3060	 63.02	0	3431188..3432666	+	492	148824251	-	TBFG_13076	-	cytochrome P450 136 cyp136
3061	 65.51	0	3433437..3434909	-	490	148824252	-	TBFG_13077	-	GntR family transcriptional regulator
3062	 66.02	0	3435026..3437191	-	721	148824253	-	TBFG_13078	-	acyl-CoA dehydrogenase fadE22
3063	 67.98	0	3437348..3438871	+	507	148824254	ligB	TBFG_13079	-	ATP-dependent DNA ligase
3064	 64.38	0	3439007..3441283	+	758	148824255	-	TBFG_13080	-	carbon starvation protein A cstA
3065	 60.33	-1	3441589..3442014	-	141	148824256	-	TBFG_13081	-	integral membrane protein
3066	 59.88	-1	3442151..3442474	+	107	148824257	-	TBFG_13082	-	multi-drug transport integral membrane protein mmr
3067	 68.97	+1	3442471..3443079	+	202	148824258	-	TBFG_13083	-	DeoR family transcriptional regulator
3068	 65.94	0	3443192..3443602	+	136	148824259	-	TBFG_13084	-	hypothetical protein
3069	 66.30	0	3443743..3445386	-	547	148824260	-	TBFG_13085	-	phosphoglucomutase
3070	 63.91	0	3445456..3445854	+	132	148824261	-	TBFG_13086	-	transmembrane protein
3071	 62.99	0	3445851..3446231	+	126	148824262	-	TBFG_13087	-	integral membrane protein
3072	 64.41	0	3446228..3447337	+	369	148824263	-	TBFG_13088	-	hypothetical protein
3073	 66.47	0	3447562..3448077	-	171	148824264	-	TBFG_13089	-	hypothetical protein
3074	 66.39	0	3448093..3448449	-	118	148824265	-	TBFG_13090	-	hypothetical protein
3075	 69.41	+1	3448543..3449817	+	424	148824266	-	TBFG_13091	-	hypothetical protein
3076	 64.07	0	3449814..3450737	-	307	148824267	-	TBFG_13092	-	hypothetical protein
3077	 65.83	0	3450836..3451312	+	158	148824268	-	TBFG_13093	-	hypothetical protein
3078	 67.44	0	3451305..3453116	+	603	148824269	-	TBFG_13094	-	hydrolase
3079	 63.68	0	3453117..3453518	+	133	148824270	-	TBFG_13095	-	hydroxylaminobenzene mutase hab
3080	 64.73	0	3453534..3454361	-	275	148824271	-	TBFG_13096	-	hypothetical protein
3081	 67.87	0	3454420..3457752	-	1110	148824272	-	TBFG_13097	-	serine/threonine-protein kinase transcriptional regulatory protein pknK
3082	 64.81	0	3457804..3459042	+	412	148824273	-	TBFG_13098	-	hypothetical protein
3083	 66.86	0	3459168..3460190	-	340	148824274	-	TBFG_13099	-	virulence-regulating transcriptional regulator VirS
3084	 65.19	0	3460268..3461755	+	495	148824275	-	TBFG_13100	-	monooxygenase
3085	 69.15	+1	3461761..3462687	+	308	148824276	-	TBFG_13101	-	acetyl-hydrolase/esterase lipR
3086	 66.31	0	3462684..3463514	+	276	148824277	-	TBFG_13102	-	short-chain type dehydrogenase/reductase
3087	 66.76	0	3463545..3464651	+	368	148824278	-	TBFG_13103	-	zinc-type alcohol dehydrogenase adhD (aldehyde reductase)
3088	 69.97	+1	3464686..3466107	+	473	148824279	-	TBFG_13104	-	hypothetical protein
3089	 65.89	0	3466104..3467528	+	474	148824280	-	TBFG_13105	-	hypothetical protein
3090	 64.75	0	3467525..3469036	+	503	148824281	-	TBFG_13106	-	fatty-acid-CoA ligase fadD13
3091	 62.73	0	3469975..3470862	+	295	148824282	-	TBFG_13107	-	hypothetical protein
3092	 69.39	+1	3470880..3472571	+	563	148824283	-	TBFG_13108	-	hypothetical protein
3093	 66.56	0	3472578..3473498	-	306	148824284	-	TBFG_13109	-	integral membrane protein
3094	 70.15	+1	3473524..3474528	-	334	148824285	-	TBFG_13110	-	oxidoreductase
3095	 68.61	0	3474525..3475655	-	376	148824286	-	TBFG_13111	-	hypothetical protein
3096	 65.20	0	3475737..3476213	+	158	148824287	-	TBFG_13112	-	transcriptional regulator
3097	 64.12	0	3476311..3477450	+	379	148824288	-	TBFG_13113	-	hypothetical protein
3098	 62.40	0	3477542..3478855	-	437	148824289	-	TBFG_13114	-	hypothetical protein
3099	 60.49	-1	3478974..3479426	-	150	148824290	-	TBFG_13115	-	hypothetical protein
3100	 66.78	0	3480177..3481028	-	283	148824291	-	TBFG_13116	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.