IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2955	 60.02	-1	3320943..3321770	+	275	148824146	-	TBFG_12971	-	glycosyl transferase
2956	 64.88	0	3322187..3323473	-	428	148824147	-	TBFG_12972	-	glycosyl transferase
2957	 53.66	-2	3323574..3324311	-	245	148824148	-	TBFG_12973	-	methyltransferase
2958	 64.66	0	3324426..3324674	-	82	148824149	-	TBFG_12974	-	hypothetical protein
2959	 65.64	0	3324756..3325145	+	129	148824150	-	TBFG_12975	-	transposase
2960	 65.70	0	3325246..3326595	-	449	148824151	-	TBFG_12976	-	glycosyl transferase
2961	 61.51	-1	3326709..3327929	+	406	148824152	-	TBFG_12977	-	hypothetical protein
2962	 62.27	0	3328002..3328934	+	310	148824153	-	TBFG_12978	-	formyltetrahydrofolate deformylase
2963	 65.32	0	3328940..3329458	+	172	148824154	-	TBFG_12979	-	hypothetical protein
2964	 61.11	-1	3329803..3330288	-	161	148824155	coaD	TBFG_12980	-	phosphopantetheine adenylyltransferase
2965	 69.84	+1	3330374..3330940	-	188	148824156	-	TBFG_12981	-	methyltransferase
2966	 65.28	0	3331136..3334519	-	1127	148824157	-	TBFG_12982	-	pyruvate carboxylase
2967	 62.72	0	3334544..3335176	-	210	148824158	-	TBFG_12983	-	integral membrane protein
2968	 63.28	0	3335182..3335949	-	255	148824159	-	TBFG_12984	-	membrane or secreted protein
2969	 65.34	0	3336046..3337176	-	376	148824160	-	TBFG_12985	-	lipase/esterase lipN
2970	 63.72	0	3337574..3338422	+	282	148824161	-	TBFG_12986	-	oxidoreductase
2971	 65.41	0	3338496..3339209	-	237	148824162	-	TBFG_12987	-	membrane or exported protein
2972	 64.59	0	3339206..3341419	-	737	148824163	-	TBFG_12988	-	ATP-dependent DNA helicase recG
2973	 70.70	+1	3341422..3342834	-	470	148824164	-	TBFG_12989	-	hypothetical protein
2974	 65.13	0	3343327..3343521	+	64	148824165	rpmB	TBFG_12990	-	50S ribosomal protein L28
2975	 67.11	0	3343544..3344227	-	227	148824166	-	TBFG_12991	-	uracil-DNA glycosylase
2976	 69.56	+1	3344260..3345261	-	333	148824167	-	TBFG_12992	-	thiamine monophosphate kinase
2977	 65.87	0	3345258..3346637	-	459	148824168	-	TBFG_12993	-	transposase
2978	 65.30	0	3346637..3347221	-	194	148824169	-	TBFG_12994	-	resolvase
2979	 70.70	+1	3347433..3347978	+	181	148824170	-	TBFG_12995	-	hypothetical protein
2980	 67.56	0	3348505..3349626	-	373	148824171	ddl	TBFG_12996	-	D-alanyl-alanine synthetase A
2981	 67.36	0	3349704..3350708	-	334	148824172	gpsA	TBFG_12997	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2982	 69.61	+1	3350827..3351471	+	214	148824173	-	TBFG_12998	-	hypothetical protein
2983	 63.43	0	3351566..3353791	+	741	148824174	-	TBFG_12999	-	polyphosphate kinase
2984	 65.41	0	3353874..3354827	+	317	148824175	-	TBFG_13000	-	hydrolase mutT1
2985	 64.65	0	3354885..3355529	-	214	148824176	-	TBFG_13001	-	DNA-binding protein hupB (histone-like protein)
2986	 59.97	-1	3355742..3356338	-	198	148824177	leuD	TBFG_13002	-	isopropylmalate isomerase small subunit
2987	 66.60	0	3356363..3357784	-	473	148824178	-	TBFG_13003	-	isopropylmalate isomerase large subunit
2988	 71.94	+1	3357856..3358557	+	233	148824179	-	TBFG_13004	-	transcriptional regulator
2989	 62.49	0	3358568..3359428	-	286	148824180	-	TBFG_13005	-	hypothetical protein
2990	 65.45	0	3359691..3360182	+	163	148824181	-	TBFG_13006	-	hypothetical protein
2991	 66.67	0	3360514..3361986	-	490	148824182	gltX	TBFG_13007	-	glutamyl-tRNA synthetase
2992	 64.17	0	3361983..3362702	-	239	148824183	-	TBFG_13008	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
2993	 66.82	0	3362978..3364315	+	445	148824184	-	TBFG_13009	-	integral membrane protein
2994	 67.26	0	3364167..3365177	-	336	148824185	-	TBFG_13010	-	3-isopropylmalate dehydrogenase
2995	 68.68	0	3365192..3366778	-	528	148824186	-	TBFG_13011	-	D-3-phosphoglycerate dehydrogenase
2996	 69.79	+1	3366808..3368250	+	480	148824187	-	TBFG_13012	-	hypothetical protein
2997	 65.58	0	3368524..3368985	+	153	148824188	-	TBFG_13013	-	hypothetical protein
2998	 64.63	0	3369296..3370276	+	326	148824189	-	TBFG_13014	-	lipoprotein lppY
2999	 66.21	0	3370321..3370980	+	219	148824190	-	TBFG_13015	-	transmembrane protein
3000	 64.47	0	3371294..3372295	-	333	148824191	-	TBFG_13016	-	ketol-acid reductoisomerase
3001	 62.52	0	3372333..3372839	-	168	148824192	ilvH	TBFG_13017	-	acetolactate synthase 3 regulatory subunit
3002	 67.64	0	3372839..3374695	-	618	148824193	-	TBFG_13018	-	acetolactate synthase 1 catalytic subunit
3003	 69.31	+1	3375018..3375395	+	125	148824194	-	TBFG_13019	-	low molecular weight protein antigen 6 cfp6
3004	 64.76	0	3375402..3376241	-	279	148824195	-	TBFG_13020	-	hypothetical protein
3005	 65.91	0	3376355..3377539	+	394	148824196	-	TBFG_13021	-	lipoprotein lppZ
3006	 62.44	0	3377545..3378159	-	204	148824197	-	TBFG_13022	-	oxidoreductase
3007	 61.54	-1	3378353..3378976	+	207	148824198	-	TBFG_13023	-	hypothetical protein
3008	 65.10	0	3378973..3380502	-	509	148824199	gatB	TBFG_13024	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
3009	 65.50	0	3380532..3381563	-	343	148824200	-	TBFG_13025	-	6-phosphofructokinase
3010	 70.03	+1	3381659..3383143	-	494	148824201	gatA	TBFG_13026	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
3011	 67.33	0	3383140..3383439	-	99	148824202	gatC	TBFG_13027	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
3012	 70.54	+1	3383458..3384180	+	240	148824203	-	TBFG_13028	-	hypothetical protein
3013	 69.12	+1	3384254..3386329	-	691	148824204	ligA	TBFG_13029	-	NAD-dependent DNA ligase LigA
3014	 70.41	+1	3386360..3387373	-	337	148824205	-	TBFG_13030	-	hypothetical protein
3015	 63.49	0	3387467..3388096	+	209	148824206	-	TBFG_13031	-	lipoprotein lpqA
3016	 66.12	0	3388199..3388561	-	120	148824207	-	TBFG_13032	-	EsxQ-like protein
3017	 63.68	0	3388648..3389952	-	434	148824208	-	TBFG_13033	-	PPE family protein
3018	 60.29	-1	3390038..3390241	-	67	148824209	-	TBFG_13034	-	PE family protein
3019	 61.51	-1	3390420..3390710	-	96	148824210	-	TBFG_13035	-	EsxR-like protein
3020	 62.59	0	3390745..3391038	-	97	148824211	-	TBFG_13036	-	Esat-6 like protein esxS
3021	 64.30	0	3391085..3392392	-	435	148824212	-	TBFG_13037	-	PPE family protein
3022	 66.67	0	3392389..3392802	-	137	148824213	-	TBFG_13038	-	PE family protein
3023	 66.51	0	3393085..3394332	-	415	148824214	-	TBFG_13039	-	transposase
3024	 66.21	0	3394495..3395598	-	367	148824215	trmU	TBFG_13040	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3025	 66.07	0	3395595..3396776	-	393	148824216	-	TBFG_13041	-	cysteine desulfurase iscS
3026	 68.52	0	3396873..3397787	-	304	148824217	-	TBFG_13042	-	hypothetical protein
3027	 67.61	0	3397784..3398524	-	246	148824218	-	TBFG_13043	-	hypothetical protein
3028	 69.38	+1	3398785..3399741	-	318	148824219	-	TBFG_13044	-	electron transfer flavoprotein alpha subunit fixB
3029	 65.17	0	3399780..3400580	-	266	148824220	-	TBFG_13045	-	electron transfer flavoprotein beta subunit fixA
3030	 66.30	0	3400811..3401635	+	274	148824221	-	TBFG_13046	-	hypothetical protein
3031	 68.69	0	3401632..3403212	+	526	148824222	-	TBFG_13047	-	hypothetical protein
3032	 68.03	0	3403244..3404488	+	414	148824223	-	TBFG_13048	-	transferase
3033	 60.66	-1	3405090..3405638	+	182	148824224	-	TBFG_13049	-	hypothetical protein
3034	 65.26	0	3405729..3406583	-	284	148824225	-	TBFG_13050	-	transferase
3035	 69.07	+1	3407089..3408171	+	360	148824226	-	TBFG_13051	-	hypothetical protein
3036	 63.45	0	3408168..3408851	-	227	148824227	-	TBFG_13052	-	secreted protein TB22.2
3037	 69.55	+1	3408924..3410000	-	358	148824228	-	TBFG_13053	-	hypothetical protein
3038	 66.36	0	3410135..3411118	-	327	148824229	-	TBFG_13054	-	hypothetical protein
3039	 69.80	+1	3411129..3411893	-	254	148824230	-	TBFG_13055	-	enoyl-CoA hydratase
3040	 68.28	0	3411902..3412768	-	288	148824231	-	TBFG_13056	-	hypothetical protein
3041	 67.94	0	3412765..3413628	-	287	148824232	-	TBFG_13057	-	ATP-binding protein ABC transporter
3042	 66.02	0	3413643..3414872	-	409	148824233	-	TBFG_13058	-	phosphoserine phosphatase
3043	 61.27	-1	3414910..3416631	-	573	148824234	-	TBFG_13059	-	cytochrome C oxidase subunit I ctaD
3044	 67.41	0	3416846..3417925	+	359	148824235	-	TBFG_13060	-	Fe(III)-dicitrate-binding periplasmic lipoprotein fecB
3045	 64.65	0	3417995..3419035	+	346	148824236	-	TBFG_13061	-	NADP-dependent alcohol dehydrogenase adhC
3046	 68.27	0	3419024..3419398	-	124	148824237	-	TBFG_13062	-	hypothetical protein
3047	 63.86	0	3419732..3420016	-	94	148824238	-	TBFG_13063	-	hypothetical protein
3048	 60.10	-1	3420114..3421088	-	324	148824239	nrdF	TBFG_13064	-	ribonucleotide-diphosphate reductase subunit beta
3049	 64.06	0	3421219..3422793	-	524	148824240	-	TBFG_13065	-	monooxygenase
3050	 65.05	0	3422927..3423667	-	246	148824241	-	TBFG_13066	-	AsnC family transcriptional regulator
3051	 58.86	-1	3423795..3425972	-	725	148824242	-	TBFG_13067	-	ribonucleotide-diphosphate reductase subunit alpha
3052	 61.59	-1	3425942..3426394	-	150	148824243	nrdI	TBFG_13068	-	ribonucleotide reductase stimulatory protein
3053	 62.92	0	3426429..3426668	-	79	148824244	-	TBFG_13069	-	glutaredoxin-like electron transport protein nrdH
3054	 57.04	-2	3426646..3427050	-	134	148824245	-	TBFG_13070	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.