IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2888	 63.77	0	3210648..3211511	-	287	148824079	rpsB	TBFG_12904	-	30S ribosomal protein S2
2889	 71.47	+1	3211795..3212544	+	249	148824080	-	TBFG_12905	-	hypothetical protein
2890	 67.89	0	3212323..3213549	-	408	148824081	-	TBFG_12906	-	PPE family protein
2891	 69.43	+1	3213949..3214926	+	325	148824082	-	TBFG_12907	-	oxidoreductase
2892	 70.79	+1	3214923..3215819	-	298	148824083	xerC	TBFG_12908	-	site-specific tyrosine recombinase XerC
2893	 67.61	0	3215910..3216761	-	283	148824084	-	TBFG_12909	-	mycobactin utilization protein viuB
2894	 71.71	+1	3216794..3217963	-	389	148824085	-	TBFG_12910	-	hypothetical protein
2895	 68.98	+1	3217960..3219471	-	503	148824086	-	TBFG_12911	-	hypothetical protein
2896	 67.84	0	3219471..3219896	-	141	148824087	-	TBFG_12912	-	hypothetical protein
2897	 64.98	0	3220105..3220935	-	276	148824088	-	TBFG_12913	-	formate dehydrogenase accessory protein
2898	 65.47	0	3220935..3223274	-	779	148824089	-	TBFG_12914	-	formate dehydrogenase H fdhF
2899	 56.21	-2	3223332..3223637	-	101	148824090	-	TBFG_12915	-	hypothetical protein
2900	 68.18	0	3223691..3224485	-	264	148824091	rnhB	TBFG_12916	-	ribonuclease HII
2901	 65.08	0	3224499..3225383	-	294	148824092	-	TBFG_12917	-	signal peptidase I lepB (leader peptidase I)
2902	 63.45	0	3225441..3225782	-	113	148824093	rplS	TBFG_12918	-	50S ribosomal protein L19
2903	 66.24	0	3226157..3227101	+	314	148824094	-	TBFG_12919	-	lipoprotein lppW
2904	 65.80	0	3227194..3227886	-	230	148824095	trmD	TBFG_12920	-	tRNA (guanine-N(1)-)-methyltransferase
2905	 62.90	0	3227890..3228420	-	176	148824096	rimM	TBFG_12921	-	16S rRNA-processing protein
2906	 63.37	0	3228434..3228676	-	80	148824097	-	TBFG_12922	-	hypothetical protein
2907	 65.44	0	3228684..3229172	-	162	148824098	rpsP	TBFG_12923	-	30S ribosomal protein S16
2908	 58.56	-2	3229356..3229799	-	147	148824099	-	TBFG_12924	-	hypothetical protein
2909	 69.06	+1	3229868..3230743	+	291	148824100	-	TBFG_12925	-	D-alanyl-D-alanine carboxypeptidase dacB2
2910	 64.46	0	3230803..3231390	-	195	148824101	-	TBFG_12926	-	TetR family transcriptional regulator
2911	 64.81	0	3231392..3233227	-	611	148824102	-	TBFG_12927	-	D-amino acid aminohydrolase
2912	 67.29	0	3233296..3235053	-	585	148824103	-	TBFG_12928	-	transmembrane serine/threonine-protein kinase I pknI
2913	 68.19	0	3235097..3236209	-	370	148824104	-	TBFG_12929	-	hypothetical protein
2914	 66.35	0	3236237..3237814	-	525	148824105	-	TBFG_12930	-	signal recognition particle protein ffh
2915	 67.46	0	3237892..3239772	+	626	148824106	-	TBFG_12931	-	hypothetical protein
2916	 66.67	0	3239783..3242209	-	808	148824107	-	TBFG_12932	-	PII uridylyl-transferase
2917	 60.77	-1	3242267..3242605	-	112	148824108	-	TBFG_12933	-	nitrogen regulatory protein P-II glnB
2918	 63.18	0	3242602..3244035	-	477	148824109	-	TBFG_12934	-	ammonium-transport integral membrane protein amt
2919	 68.48	0	3244344..3245612	-	422	148824110	-	TBFG_12935	-	cell division protein ftsY
2920	 67.22	0	3245662..3249279	-	1205	148824111	-	TBFG_12936	-	chromosome partitioning protein smc
2921	 70.57	+1	3249291..3249572	-	93	148824112	-	TBFG_12937	-	acylphosphate phosphohydrolase acyP
2922	 67.87	0	3249559..3249972	-	137	148824113	-	TBFG_12938	-	hypothetical protein
2923	 67.13	0	3250074..3250943	-	289	148824114	-	TBFG_12939	-	formamidopyrimidine-DNA glycosylase
2924	 64.18	0	3251302..3252024	-	240	148824115	rnc	TBFG_12940	-	ribonuclease III
2925	 65.54	0	3252021..3252644	-	207	148824116	-	TBFG_12941	-	hypothetical protein
2926	 63.82	0	3252695..3253432	-	245	148824117	-	TBFG_12942	-	hypothetical protein
2927	 54.45	-2	3253671..3254456	+	261	148824118	-	TBFG_12943	-	thioesterase tesA
2928	 60.71	-1	3255041..3256921	+	626	148824119	-	TBFG_12944	-	acyl-CoA synthetase
2929	 65.39	0	3256918..3262548	+	1876	148824120	-	TBFG_12945	-	phenolpthiocerol synthesis type-I polyketide synthase ppsA
2930	 65.37	0	3262548..3267161	+	1537	148824121	-	TBFG_12946	-	phenolpthiocerol synthesis type-I polyketide synthase ppsB
2931	 66.18	0	3267158..3273724	+	2188	148824122	-	TBFG_12947	-	phenolpthiocerol synthesis type-I polyketide synthase ppsC
2932	 66.92	0	3273721..3279204	+	1827	148824123	-	TBFG_12948	-	phenolpthiocerol synthesis type-I polyketide synthase ppsD
2933	 65.68	0	3279210..3283676	+	1488	148824124	-	TBFG_12949	-	phenolpthiocerol synthesis type-I polyketide synthase ppsE
2934	 62.75	0	3283687..3284682	+	331	148824125	-	TBFG_12950	-	daunorubicin-dim-transport ATP-binding protein ABC transporter drrA
2935	 59.43	-1	3284679..3285548	+	289	148824126	-	TBFG_12951	-	daunorubicin-dim-transport integral membrane protein ABC transporter drrB
2936	 57.52	-2	3285545..3286375	+	276	148824127	-	TBFG_12952	-	daunorubicin-dim-transport integral membrane protein ABC transporter drrC
2937	 60.44	-1	3286422..3287690	+	422	148824128	-	TBFG_12953	-	acyltransferase PapA5
2938	 66.49	0	3287853..3294188	-	2111	148824129	-	TBFG_12954	-	multi-functional membrane-associated mycocerosic acid synthase mas
2939	 59.44	-1	3294808..3296550	+	580	148824130	-	TBFG_12955	-	acyl-CoA synthetase
2940	 66.02	0	3296543..3299305	+	920	148824131	-	TBFG_12956	-	transmembrane transport protein mmpL7
2941	 67.31	0	3299937..3301178	+	413	148824132	-	TBFG_12957	-	transposase
2942	 65.27	0	3301263..3301979	+	238	148824133	-	TBFG_12958	-	transposase
2943	 59.97	-1	3302097..3302798	-	233	148824134	-	TBFG_12959	-	lipoprotein lppX
2944	 68.38	0	3302976..3307826	-	1616	148824135	-	TBFG_12960	-	polyketide synthase pks1
2945	 65.86	0	3307823..3309313	-	496	148824136	-	TBFG_12961	-	polyketide synthase pks15
2946	 61.47	-1	3309310..3311427	-	705	148824137	-	TBFG_12962	-	acyl-CoA synthetase
2947	 52.50	-2	3311444..3312043	-	199	148824138	-	TBFG_12963	-	hypothetical protein
2948	 60.00	-1	3312069..3313928	-	619	148824139	-	TBFG_12964	-	acyl-CoA synthetase
2949	 61.26	-1	3314576..3315721	-	381	148824140	-	TBFG_12965	-	oxidoreductase
2950	 61.99	-1	3315914..3316726	+	270	148824141	-	TBFG_12966	-	methyltransferase
2951	 64.84	0	3316752..3318008	+	418	148824142	-	TBFG_12967	-	hypothetical protein
2952	 62.81	0	3318139..3318864	-	241	148824143	-	TBFG_12968	-	hypothetical protein
2953	 67.70	0	3319053..3320018	-	321	148824144	-	TBFG_12969	-	hypothetical protein
2954	 53.69	-2	3320141..3320872	+	243	148824145	-	TBFG_12970	-	hypothetical protein
2955	 60.02	-1	3320943..3321770	+	275	148824146	-	TBFG_12971	-	glycosyl transferase
2956	 64.88	0	3322187..3323473	-	428	148824147	-	TBFG_12972	-	glycosyl transferase
2957	 53.66	-2	3323574..3324311	-	245	148824148	-	TBFG_12973	-	methyltransferase
2958	 64.66	0	3324426..3324674	-	82	148824149	-	TBFG_12974	-	hypothetical protein
2959	 65.64	0	3324756..3325145	+	129	148824150	-	TBFG_12975	-	transposase
2960	 65.70	0	3325246..3326595	-	449	148824151	-	TBFG_12976	-	glycosyl transferase
2961	 61.51	-1	3326709..3327929	+	406	148824152	-	TBFG_12977	-	hypothetical protein
2962	 62.27	0	3328002..3328934	+	310	148824153	-	TBFG_12978	-	formyltetrahydrofolate deformylase
2963	 65.32	0	3328940..3329458	+	172	148824154	-	TBFG_12979	-	hypothetical protein
2964	 61.11	-1	3329803..3330288	-	161	148824155	coaD	TBFG_12980	-	phosphopantetheine adenylyltransferase
2965	 69.84	+1	3330374..3330940	-	188	148824156	-	TBFG_12981	-	methyltransferase
2966	 65.28	0	3331136..3334519	-	1127	148824157	-	TBFG_12982	-	pyruvate carboxylase
2967	 62.72	0	3334544..3335176	-	210	148824158	-	TBFG_12983	-	integral membrane protein
2968	 63.28	0	3335182..3335949	-	255	148824159	-	TBFG_12984	-	membrane or secreted protein
2969	 65.34	0	3336046..3337176	-	376	148824160	-	TBFG_12985	-	lipase/esterase lipN
2970	 63.72	0	3337574..3338422	+	282	148824161	-	TBFG_12986	-	oxidoreductase
2971	 65.41	0	3338496..3339209	-	237	148824162	-	TBFG_12987	-	membrane or exported protein
2972	 64.59	0	3339206..3341419	-	737	148824163	-	TBFG_12988	-	ATP-dependent DNA helicase recG
2973	 70.70	+1	3341422..3342834	-	470	148824164	-	TBFG_12989	-	hypothetical protein
2974	 65.13	0	3343327..3343521	+	64	148824165	rpmB	TBFG_12990	-	50S ribosomal protein L28
2975	 67.11	0	3343544..3344227	-	227	148824166	-	TBFG_12991	-	uracil-DNA glycosylase
2976	 69.56	+1	3344260..3345261	-	333	148824167	-	TBFG_12992	-	thiamine monophosphate kinase
2977	 65.87	0	3345258..3346637	-	459	148824168	-	TBFG_12993	-	transposase
2978	 65.30	0	3346637..3347221	-	194	148824169	-	TBFG_12994	-	resolvase
2979	 70.70	+1	3347433..3347978	+	181	148824170	-	TBFG_12995	-	hypothetical protein
2980	 67.56	0	3348505..3349626	-	373	148824171	ddl	TBFG_12996	-	D-alanyl-alanine synthetase A
2981	 67.36	0	3349704..3350708	-	334	148824172	gpsA	TBFG_12997	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2982	 69.61	+1	3350827..3351471	+	214	148824173	-	TBFG_12998	-	hypothetical protein
2983	 63.43	0	3351566..3353791	+	741	148824174	-	TBFG_12999	-	polyphosphate kinase
2984	 65.41	0	3353874..3354827	+	317	148824175	-	TBFG_13000	-	hydrolase mutT1
2985	 64.65	0	3354885..3355529	-	214	148824176	-	TBFG_13001	-	DNA-binding protein hupB (histone-like protein)
2986	 59.97	-1	3355742..3356338	-	198	148824177	leuD	TBFG_13002	-	isopropylmalate isomerase small subunit
2987	 66.60	0	3356363..3357784	-	473	148824178	-	TBFG_13003	-	isopropylmalate isomerase large subunit
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.