IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.92	-1	102..1625	+	507	148821192	dnaA	TBFG_10001	-	chromosomal replication initiation protein
2	 59.97	-1	2153..3361	+	402	148821193	-	TBFG_10002	-	DNA polymerase III subunit beta
3	 60.02	-1	3381..4538	+	385	148821194	recF	TBFG_10003	-	recombination protein F
4	 66.13	0	4535..5098	+	187	148821195	-	TBFG_10004	-	hypothetical protein
5	 60.19	-1	5224..7368	+	714	148821196	gyrB	TBFG_10005	-	DNA gyrase subunit B
6	 63.85	0	7403..9919	+	838	148821197	-	TBFG_10006	-	DNA gyrase subunit A
7	 68.20	0	10015..10929	+	304	148821198	-	TBFG_10007	-	hypothetical protein
8	 71.00	+1	11975..12412	-	145	148821199	-	TBFG_10008	-	hypothetical protein
9	 62.48	0	12569..13117	+	182	148821200	-	TBFG_10009	-	iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA
10	 62.44	0	13234..13659	-	141	148821201	-	TBFG_10010	-	hypothetical protein
11	 56.38	-2	13815..14096	-	93	148821202	-	TBFG_10011	-	putative septation inhibitor protein
12	 64.77	0	14190..14978	+	262	148821203	-	TBFG_10012	-	hypothetical protein
13	 63.81	0	15015..15713	+	232	148821204	-	TBFG_10013	-	para-aminobenzoate synthase component II
14	 63.26	0	15691..17571	-	626	148821205	-	TBFG_10014	-	transmembrane serine/threonine-protein kinase B pknB
15	 67.67	0	17568..18863	-	431	148821206	-	TBFG_10015	-	transmembrane serine/threonine-protein kinase A pknA
16	 64.50	0	18860..20335	-	491	148821207	-	TBFG_10016	-	penicillin-binding protein pbpA
17	 62.13	0	20332..21741	-	469	148821208	-	TBFG_10017	-	cell division protein rodA
18	 67.51	0	21738..23282	-	514	148821209	-	TBFG_10018	-	serine/threonine phosphatase ppp
19	 63.03	0	23371..23838	-	155	148821210	-	TBFG_10019	-	hypothetical protein
20	 66.35	0	23962..25545	-	527	148821211	-	TBFG_10020	-	hypothetical protein
21	 66.05	0	26014..26982	-	322	148821212	-	TBFG_10021	-	hypothetical protein
22	 68.33	0	27124..27543	-	139	148821213	-	TBFG_10022	-	transcriptional regulatory protein whib-like whiB5
23	 67.32	0	27696..28466	+	256	148821214	-	TBFG_10023	-	transcriptional regulator
24	 69.03	+1	28463..29308	+	281	148821215	-	TBFG_10024	-	hypothetical protein
25	 65.29	0	29346..29708	+	120	148821216	-	TBFG_10025	-	hypothetical protein
26	 65.11	0	29823..31169	+	448	148821217	-	TBFG_10026	-	hypothetical protein
27	 62.89	0	31290..31607	+	105	148821218	-	TBFG_10027	-	hypothetical protein
28	 63.73	0	31615..31920	+	101	148821219	-	TBFG_10028	-	hypothetical protein
29	 66.12	0	32158..33255	+	365	148821220	-	TBFG_10029	-	hypothetical protein
30	 64.93	0	33325..33900	+	191	148821221	-	TBFG_10030	-	hypothetical protein
31	 62.05	-1	34396..36711	+	771	148821222	-	TBFG_10031	-	8-amino-7-oxononanoate synthase bioF2
32	 56.82	-2	36708..36971	+	87	148821223	-	TBFG_10032	-	acyl carrier protein acpA
33	 65.66	0	36968..37363	+	131	148821224	-	TBFG_10033	-	hypothetical protein
34	 63.59	0	37360..39048	+	562	148821225	-	TBFG_10034	-	fatty-acid-CoA ligase fadD34
35	 68.73	0	39157..39930	-	257	148821226	-	TBFG_10035	-	hypothetical protein
36	 67.72	0	39978..41303	-	441	148821227	-	TBFG_10036	-	integral membrane protein
37	 65.35	0	41405..42013	+	202	148821228	-	TBFG_10037	-	hypothetical protein
38	 71.84	+1	42105..42452	-	115	148821229	-	TBFG_10038	-	transmembrane protein
39	 67.52	0	42534..43466	-	310	148821230	-	TBFG_10039	-	secreted proline rich protein mtc28 (proline rich 28 kDa antigen)
40	 62.96	0	43663..46572	+	969	148821231	leuS	TBFG_10040	-	leucyl-tRNA synthetase
41	 63.80	0	46682..47308	-	208	148821232	-	TBFG_10041	-	MarR family transcriptional regulator
42	 63.54	0	47467..48201	-	244	148821233	-	TBFG_10042	-	GntR family transcriptional regulator
43	 66.54	0	48334..49128	-	264	148821234	-	TBFG_10043	-	oxidoreductase
44	 67.11	0	49144..50040	-	298	148821235	-	TBFG_10044	-	hydrolase
45	 63.95	0	50122..51225	-	367	148821236	-	TBFG_10045	-	myo-inositol-1-phosphate synthase ino1
46	 66.48	0	51286..51828	-	180	148821237	-	TBFG_10046	-	hypothetical protein
47	 65.86	0	51929..52798	-	289	148821238	-	TBFG_10047	-	hypothetical protein
48	 66.67	0	52932..53345	+	137	148821239	-	TBFG_10048	-	hypothetical protein
49	 65.17	0	53338..55803	+	821	148821240	-	TBFG_10049	-	bifunctional penicillin-binding protein 1A/1B ponA1: penicillin-insensitive transglycosylase + penicillin-sensitive transpeptidase
50	 64.53	0	55800..57482	+	560	148821241	-	TBFG_10050	-	transmembrane protein
51	 65.96	0	57514..58077	+	187	148821242	-	TBFG_10051	-	hypothetical protein
52	 60.14	-1	58296..58586	+	96	148821243	rpsF	TBFG_10052	-	30S ribosomal protein S6
53	 66.67	0	58690..59184	+	164	148821244	-	TBFG_10053	-	single-strand DNA-binding protein
54	 64.71	0	59226..59480	+	84	148821245	rpsR	TBFG_10054	-	30S ribosomal protein S18
55	 62.09	0	59513..59971	+	152	148821246	rplI	TBFG_10055	-	50S ribosomal protein L9
56	 60.73	-1	60000..60521	+	173	148821247	-	TBFG_10056	-	hypothetical protein
57	 62.86	0	60500..63124	+	874	148821248	-	TBFG_10057	-	replicative DNA helicase
58	 61.76	-1	63304..63996	+	230	148821249	-	TBFG_10058	-	hypothetical protein
59	 60.06	-1	64013..65071	+	352	148821250	-	TBFG_10059	-	hypothetical protein
60	 60.89	-1	65116..65496	-	126	148821251	-	TBFG_10060	-	hypothetical protein
61	 68.24	0	65656..66798	+	380	148821252	-	TBFG_10061	-	cellulase celA1
62	 67.22	0	67027..68466	+	479	148821253	-	TBFG_10062	-	oxidoreductase
63	 62.25	0	68724..69764	+	346	148821254	-	TBFG_10063	-	transmembrane protein
64	 64.24	0	69646..71664	+	672	148821255	-	TBFG_10064	-	transmembrane protein
65	 62.44	0	71963..72364	+	133	148821256	-	TBFG_10065	-	hypothetical protein
66	 61.75	-1	72416..74653	-	745	148821257	-	TBFG_10066	-	isocitrate dehydrogenase [NADP] icd2
67	 65.09	0	74771..75340	-	189	148821258	-	TBFG_10067	-	TetR family transcriptional regulator
68	 65.79	0	75443..76354	+	303	148821259	-	TBFG_10068	-	short chain dehydrogenase
69	 65.08	0	76379..77764	-	461	148821260	-	TBFG_10069	-	L-serine dehydratase sdaA
70	 66.12	0	77761..79038	-	425	148821261	-	TBFG_10070	-	serine hydroxymethyltransferase
71	 64.52	0	79628..80326	+	232	148821262	-	TBFG_10071	-	maturase
72	 61.71	-1	80757..81806	+	349	148821263	-	TBFG_10072	-	glutamine ABC transporter membrane protein
73	 62.64	0	81809..82801	+	330	148821264	-	TBFG_10073	-	glutamine ABC transporter ATP-binding protein
74	 66.02	0	82881..84116	+	411	148821265	-	TBFG_10074	-	hypothetical protein
75	 64.11	0	84129..85301	+	390	148821266	-	TBFG_10075	-	aminotransferase
76	 62.31	0	85316..85705	-	129	148821267	-	TBFG_10076	-	hypothetical protein
77	 66.19	0	85769..86599	-	276	148821268	-	TBFG_10077	-	oxidoreductase
78	 67.99	0	86661..87266	+	201	148821269	-	TBFG_10078	-	transcriptional regulator
79	 61.11	-1	87341..87934	-	197	148821270	-	TBFG_10079	-	hypothetical protein
80	 68.13	0	88337..89158	+	273	148821271	-	TBFG_10080	-	hypothetical protein
81	 68.85	0	89155..89613	+	152	148821272	-	TBFG_10081	-	hypothetical protein
82	 65.51	0	89708..90052	+	114	148821273	-	TBFG_10082	-	transcriptional regulator
83	 69.79	+1	90057..90536	+	159	148821274	-	TBFG_10083	-	oxidoreductase
84	 71.24	+1	90533..92455	+	640	148821275	-	TBFG_10084	-	oxidoreductase
85	 68.56	0	92461..93411	+	316	148821276	-	TBFG_10085	-	formate hydrogenlyase hycD
86	 68.93	+1	93422..94084	+	220	148821277	-	TBFG_10086	-	hydrogenase hycP
87	 68.92	+1	94084..95550	+	488	148821278	-	TBFG_10087	-	hydrogenase hycQ
88	 66.80	0	95547..97025	+	492	148821279	-	TBFG_10088	-	formate hydrogenase hycE
89	 61.78	-1	97060..97734	+	224	148821280	-	TBFG_10089	-	hypothetical protein
90	 67.00	0	97891..98484	+	197	148821281	-	TBFG_10090	-	methyltransferase
91	 65.63	0	98613..99383	+	256	148821282	-	TBFG_10091	-	hypothetical protein
92	 65.10	0	99817..100584	+	255	148821283	-	TBFG_10092	-	bifunctional 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
93	 67.50	0	100716..103001	+	761	148821284	-	TBFG_10093	-	cation transporter ATPase A ctpA
94	 67.61	0	102948..103796	-	282	148821285	-	TBFG_10094	-	hypothetical protein
95	 67.40	0	103843..104796	-	317	148821286	-	TBFG_10095	-	hypothetical protein
96	 64.62	0	104567..105349	-	260	148821287	-	TBFG_10096	-	hypothetical protein
97	 65.09	0	105458..106849	+	463	148821288	-	TBFG_10097	-	PPE family protein
98	 58.85	-1	106868..107737	+	289	148821289	-	TBFG_10098	-	oxidoreductase
99	 59.06	-1	107734..108285	+	183	148821290	-	TBFG_10099	-	hypothetical protein
100	 62.66	0	108290..109912	+	540	148821291	-	TBFG_10100	-	acyl-CoA synthetase
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.