IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2816	 59.62	-1	3136625..3137872	-	415	148824007	-	TBFG_12832	-	hypothetical protein
2817	 59.40	-1	3137869..3138996	-	375	148824008	-	TBFG_12833	-	hypothetical protein
2818	 63.15	0	3138993..3139901	-	302	148824009	-	TBFG_12834	-	hypothetical protein
2819	 61.32	-1	3139882..3140592	-	236	148824010	-	TBFG_12835	-	hypothetical protein
2820	 58.67	-2	3140602..3140976	-	124	148824011	-	TBFG_12836	-	hypothetical protein
2821	 61.46	-1	3140973..3143411	-	812	148824012	-	TBFG_12837	-	hypothetical protein
2822	 62.96	0	3143408..3144352	-	314	148824013	-	TBFG_12838	-	hypothetical protein
2823	 68.83	0	3144530..3145270	-	246	148824014	-	TBFG_12839	-	hypothetical protein
2824	 66.67	0	3145347..3146237	-	296	148824015	-	TBFG_12840	-	hypothetical protein
2825	 68.81	0	3146234..3147121	-	295	148824016	-	TBFG_12841	-	hypothetical protein
2826	 72.34	+2	3147426..3147971	-	181	148824017	-	TBFG_12842	-	hypothetical protein
2827	 74.81	+2	3147968..3148237	-	89	148824018	-	TBFG_12843	-	hypothetical protein
2828	 67.41	0	3148258..3148662	-	134	148824019	-	TBFG_12844	-	hypothetical protein
2829	 62.96	0	3148647..3148862	-	71	148824020	-	TBFG_12845	-	hypothetical protein
2830	 70.53	+1	3148909..3149658	+	249	148824021	-	TBFG_12846	-	enoyl-CoA hydratase
2831	 68.05	0	3149737..3150819	-	360	148824022	-	TBFG_12847	-	sn-glycerol-3-phosphate transport ATP-binding protein ABC transporter ugpC
2832	 64.53	0	3150812..3152122	-	436	148824023	-	TBFG_12848	-	sn-glycerol-3-phosphate-binding lipoprotein ugpB
2833	 62.32	0	3152125..3152952	-	275	148824024	-	TBFG_12849	-	sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpE
2834	 62.61	0	3152949..3153860	-	303	148824025	-	TBFG_12850	-	sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA
2835	 68.95	+1	3153947..3155257	-	436	148824026	-	TBFG_12851	-	DNA-damage-inducible protein F dinF
2836	 66.27	0	3155273..3156283	-	336	148824027	-	TBFG_12852	-	hypothetical protein
2837	 68.12	0	3156258..3156809	-	183	148824028	rbfA	TBFG_12853	-	ribosome-binding factor A
2838	 69.03	+1	3156809..3159511	-	900	148824029	infB	TBFG_12854	-	translation initiation factor IF-2
2839	 64.00	0	3159597..3159896	-	99	148824030	-	TBFG_12855	-	hypothetical protein
2840	 65.23	0	3160023..3161066	-	347	148824031	nusA	TBFG_12856	-	transcription elongation factor NusA
2841	 65.76	0	3161063..3161614	-	183	148824032	-	TBFG_12857	-	hypothetical protein
2842	 69.41	+1	3161809..3162354	+	181	148824033	-	TBFG_12858	-	alanine rich transmembrane protein
2843	 69.12	+1	3162351..3162839	+	162	148824034	-	TBFG_12859	-	hypothetical protein
2844	 65.87	0	3162840..3164588	-	582	148824035	-	TBFG_12860	-	prolyl-tRNA synthetase
2845	 64.91	0	3164677..3166269	-	530	148824036	-	TBFG_12861	-	integral membrane efflux protein efpA
2846	 66.26	0	3166292..3167509	-	405	148824037	-	TBFG_12862	-	multi-functional enzyme siroheme synthase cysG: uroporphyrin-III C-methyltransferase + precorrin-2 oxidase + ferrochelatase
2847	 68.05	0	3167786..3169159	-	457	148824038	-	TBFG_12863	-	cobyrinic acid a,c-diamide synthase
2848	 65.22	0	3169159..3169782	-	207	148824039	-	TBFG_12864	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
2849	 70.48	+1	3169803..3171692	-	629	148824040	-	TBFG_12865	-	magnesium chelatase
2850	 65.61	0	3171689..3172159	-	156	148824041	-	TBFG_12866	-	hypothetical protein
2851	 63.70	0	3172218..3173699	-	493	148824042	-	TBFG_12867	-	malate:quinone oxidoreductase
2852	 72.79	+2	3173762..3175753	+	663	148824043	-	TBFG_12868	-	PE-PGRS family protein
2853	 65.03	0	3175790..3176830	+	346	148824044	-	TBFG_12869	-	hypothetical protein
2854	 62.68	0	3176843..3178222	+	459	148824045	-	TBFG_12870	-	mycothione/glutathione reductase
2855	 63.36	0	3178322..3179440	+	372	148824046	-	TBFG_12871	-	nickel-transport integral membrane protein nicT
2856	 64.26	0	3179506..3179838	+	110	148824047	-	TBFG_12872	-	Ni2+-binding GTPase
2857	 63.71	0	3180221..3180997	-	258	148824048	-	TBFG_12873	-	short chain dehydrogenase
2858	 66.30	0	3180994..3182361	-	455	148824049	-	TBFG_12874	-	aldehyde dehydrogenase aldC
2859	 67.89	0	3182358..3183176	-	272	148824050	-	TBFG_12875	-	amidotransferase
2860	 64.34	0	3183157..3184530	-	457	148824051	-	TBFG_12876	-	glutamine synthetase glnA4
2861	 63.29	0	3184690..3185547	-	285	148824052	-	TBFG_12877	-	methionine aminopeptidase
2862	 67.52	0	3185589..3186173	-	194	148824053	-	TBFG_12878	-	hypothetical protein
2863	 63.52	0	3186522..3186902	+	126	148824054	-	TBFG_12879	-	hypothetical protein
2864	 66.78	0	3186984..3188795	-	603	148824055	-	TBFG_12880	-	penicillin-binding lipoprotein
2865	 63.12	0	3189067..3189348	+	93	148824056	-	TBFG_12881	-	hypothetical protein
2866	 66.29	0	3189352..3189615	+	87	148824057	-	TBFG_12882	-	hypothetical protein
2867	 67.84	0	3189988..3190842	-	284	148824058	-	TBFG_12883	-	hypothetical protein
2868	 65.21	0	3190898..3192061	-	387	148824059	ispG	TBFG_12884	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2869	 64.77	0	3192078..3193292	-	404	148824060	-	TBFG_12885	-	transmembrane protein
2870	 67.95	0	3193300..3194541	-	413	148824061	-	TBFG_12886	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2871	 63.74	0	3194912..3195355	+	147	148824062	-	TBFG_12887	-	hypothetical protein
2872	 63.50	0	3195435..3196097	+	220	148824063	-	TBFG_12888	-	cell surface lipoprotein mpt83 (lipoprotein P23)
2873	 62.40	0	3196377..3198464	+	695	148824064	-	TBFG_12889	-	integral membrane C-type cytochrome biogenesis protein dipZ
2874	 64.26	0	3198560..3199141	+	193	148824065	-	TBFG_12890	-	major secreted immunogenic protein mpt70
2875	 64.13	0	3199193..3199507	+	104	148824066	-	TBFG_12891	-	transmembrane protein
2876	 67.59	0	3199538..3200401	-	287	148824067	-	TBFG_12892	-	integral membrane protein
2877	 62.64	0	3200406..3200927	-	173	148824068	-	TBFG_12893	-	soluble secreted antigen mpt53 precursor
2878	 66.67	0	3201113..3202207	-	364	148824069	-	TBFG_12894	-	hypothetical protein
2879	 64.28	0	3202230..3203150	-	306	148824070	-	TBFG_12895	-	integral membrane phosphatidate cytidylyltransferase cdsA
2880	 57.35	-2	3203173..3203730	-	185	148824071	frr	TBFG_12896	-	ribosome recycling factor
2881	 65.01	0	3203902..3204687	-	261	148824072	pyrH	TBFG_12897	-	uridylate kinase
2882	 63.11	0	3204922..3205680	+	252	148824073	-	TBFG_12898	-	transcriptional regulator
2883	 65.44	0	3205695..3207077	-	460	148824074	-	TBFG_12899	-	transposase
2884	 64.19	0	3207074..3207961	-	295	148824076	-	TBFG_12900	-	resolvase
2885	 66.43	0	3207960..3208379	+	139	148824075	-	TBFG_12901	-	transcriptional regulator
2886	 66.95	0	3208393..3209814	-	473	148824077	-	TBFG_12902	-	amidase
2887	 67.03	0	3209821..3210636	-	271	148824078	tsf	TBFG_12903	-	elongation factor Ts
2888	 63.77	0	3210648..3211511	-	287	148824079	rpsB	TBFG_12904	-	30S ribosomal protein S2
2889	 71.47	+1	3211795..3212544	+	249	148824080	-	TBFG_12905	-	hypothetical protein
2890	 67.89	0	3212323..3213549	-	408	148824081	-	TBFG_12906	-	PPE family protein
2891	 69.43	+1	3213949..3214926	+	325	148824082	-	TBFG_12907	-	oxidoreductase
2892	 70.79	+1	3214923..3215819	-	298	148824083	xerC	TBFG_12908	-	site-specific tyrosine recombinase XerC
2893	 67.61	0	3215910..3216761	-	283	148824084	-	TBFG_12909	-	mycobactin utilization protein viuB
2894	 71.71	+1	3216794..3217963	-	389	148824085	-	TBFG_12910	-	hypothetical protein
2895	 68.98	+1	3217960..3219471	-	503	148824086	-	TBFG_12911	-	hypothetical protein
2896	 67.84	0	3219471..3219896	-	141	148824087	-	TBFG_12912	-	hypothetical protein
2897	 64.98	0	3220105..3220935	-	276	148824088	-	TBFG_12913	-	formate dehydrogenase accessory protein
2898	 65.47	0	3220935..3223274	-	779	148824089	-	TBFG_12914	-	formate dehydrogenase H fdhF
2899	 56.21	-2	3223332..3223637	-	101	148824090	-	TBFG_12915	-	hypothetical protein
2900	 68.18	0	3223691..3224485	-	264	148824091	rnhB	TBFG_12916	-	ribonuclease HII
2901	 65.08	0	3224499..3225383	-	294	148824092	-	TBFG_12917	-	signal peptidase I lepB (leader peptidase I)
2902	 63.45	0	3225441..3225782	-	113	148824093	rplS	TBFG_12918	-	50S ribosomal protein L19
2903	 66.24	0	3226157..3227101	+	314	148824094	-	TBFG_12919	-	lipoprotein lppW
2904	 65.80	0	3227194..3227886	-	230	148824095	trmD	TBFG_12920	-	tRNA (guanine-N(1)-)-methyltransferase
2905	 62.90	0	3227890..3228420	-	176	148824096	rimM	TBFG_12921	-	16S rRNA-processing protein
2906	 63.37	0	3228434..3228676	-	80	148824097	-	TBFG_12922	-	hypothetical protein
2907	 65.44	0	3228684..3229172	-	162	148824098	rpsP	TBFG_12923	-	30S ribosomal protein S16
2908	 58.56	-2	3229356..3229799	-	147	148824099	-	TBFG_12924	-	hypothetical protein
2909	 69.06	+1	3229868..3230743	+	291	148824100	-	TBFG_12925	-	D-alanyl-D-alanine carboxypeptidase dacB2
2910	 64.46	0	3230803..3231390	-	195	148824101	-	TBFG_12926	-	TetR family transcriptional regulator
2911	 64.81	0	3231392..3233227	-	611	148824102	-	TBFG_12927	-	D-amino acid aminohydrolase
2912	 67.29	0	3233296..3235053	-	585	148824103	-	TBFG_12928	-	transmembrane serine/threonine-protein kinase I pknI
2913	 68.19	0	3235097..3236209	-	370	148824104	-	TBFG_12929	-	hypothetical protein
2914	 66.35	0	3236237..3237814	-	525	148824105	-	TBFG_12930	-	signal recognition particle protein ffh
2915	 67.46	0	3237892..3239772	+	626	148824106	-	TBFG_12931	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.