IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2760	 67.08	0	3085085..3085564	-	159	148823951	-	TBFG_12776	-	dihydrofolate reductase dfrA (tetrahydrofolate dehydrogenase)
2761	 60.10	-1	3085635..3086426	-	263	148823952	thyA	TBFG_12777	-	thymidylate synthase
2762	 66.40	0	3086591..3087328	+	245	148823953	-	TBFG_12778	-	hypothetical protein
2763	 66.41	0	3087543..3088325	-	260	148823954	fabG	TBFG_12779	-	3-ketoacyl-(acyl-carrier-protein) reductase
2764	 68.73	0	3088558..3088848	-	96	148823955	-	TBFG_12780	-	hypothetical protein
2765	 66.33	0	3088849..3090033	-	394	148823956	-	TBFG_12781	-	PPE family protein
2766	 68.48	0	3090113..3090940	-	275	148823957	-	TBFG_12782	-	PE family protein
2767	 66.49	0	3091264..3092412	-	382	148823958	-	TBFG_12783	-	PPE family protein
2768	 63.13	0	3092536..3092988	-	150	148823959	-	TBFG_12784	-	hypothetical protein
2769	 68.99	+1	3093074..3093547	-	157	148823960	-	TBFG_12785	-	transmembrane protein
2770	 64.63	0	3093559..3094296	-	245	148823961	-	TBFG_12786	-	dihydrodipicolinate reductase
2771	 65.43	0	3094307..3094711	-	134	148823962	-	TBFG_12787	-	hypothetical protein
2772	 57.35	-2	3094768..3095325	+	185	148823963	-	TBFG_12788	-	hypothetical protein
2773	 67.95	0	3095329..3096420	-	363	148823964	-	TBFG_12789	-	oxidoreductase
2774	 62.46	0	3096440..3097510	-	356	148823965	-	TBFG_12790	-	hypothetical protein
2775	 62.42	0	3097668..3098138	-	156	148823966	-	TBFG_12791	-	hypothetical protein
2776	 60.37	-1	3098170..3098709	-	179	148823967	-	TBFG_12792	-	Lrp/Asn family transcriptional regulator
2777	 64.16	0	3098775..3099890	+	371	148823968	-	TBFG_12793	-	secreted L-alanine dehydrogenase ald (40 kDa antigen)
2778	 68.60	0	3099905..3100939	-	344	148823969	-	TBFG_12794	-	hypothetical protein
2779	 68.56	0	3101000..3102316	-	438	148823970	-	TBFG_12795	-	zinc protease pepR
2780	 65.47	0	3102294..3104552	-	752	148823971	-	TBFG_12796	-	polynucleotide phosphorylase/polyadenylase
2781	 66.67	0	3104906..3105421	-	171	148823972	-	TBFG_12797	-	lipoprotein lppU
2782	 60.37	-1	3105434..3105703	-	89	148823973	rpsO	TBFG_12798	-	30S ribosomal protein S15
2783	 66.16	0	3105860..3106855	-	331	148823974	-	TBFG_12799	-	bifunctional riboflavin kinase/FMN adenylyltransferase
2784	 62.30	0	3107066..3108829	+	587	148823975	-	TBFG_12800	-	hypothetical protein
2785	 68.12	0	3108914..3109600	+	228	148823976	-	TBFG_12801	-	transcriptional repressor sirR
2786	 63.18	0	3109661..3110893	-	410	148823977	-	TBFG_12802	-	acyl-CoA dehydrogenase fadE21
2787	 64.18	0	3110919..3112124	-	401	148823978	-	TBFG_12803	-	lipid-transfer protein
2788	 66.45	0	3112157..3113536	-	459	148823979	-	TBFG_12804	-	transposase
2789	 67.70	0	3113536..3114117	-	193	148823980	-	TBFG_12805	-	resolvase
2790	 70.23	+1	3114319..3115215	-	298	148823981	truB	TBFG_12806	-	tRNA pseudouridine synthase B
2791	 66.37	0	3115212..3115895	-	227	148823982	-	TBFG_12807	-	hypothetical protein
2792	 65.85	0	3115892..3116866	-	324	148823983	-	TBFG_12808	-	hypothetical protein
2793	 66.49	0	3117011..3117574	-	187	148823984	-	TBFG_12809	-	lipoprotein lppV
2794	 69.15	+1	3117574..3119262	-	562	148823985	-	TBFG_12810	-	hypothetical protein
2795	 67.89	0	3119266..3119592	-	108	148823986	-	TBFG_12811	-	hypothetical protein
2796	 66.51	0	3119723..3120352	+	209	148823987	-	TBFG_12812	-	hypothetical protein
2797	 70.91	+1	3120371..3122020	+	549	148823988	-	TBFG_12813	-	hydrolase
2798	 62.18	0	3122122..3122478	-	118	148823989	-	TBFG_12814	-	hypothetical protein
2799	 64.07	0	3122462..3122692	-	76	148823990	-	TBFG_12815	-	transcriptional regulator
2800	 71.84	+1	3122735..3123778	-	347	148823992	-	TBFG_12816	-	hypothetical protein
2801	 66.03	0	3123777..3124244	+	155	148823991	-	TBFG_12817	-	hypothetical protein
2802	 71.04	+1	3124384..3124749	+	121	148823993	-	TBFG_12818	-	histone acetyltransferase
2803	 67.36	0	3124795..3125226	+	143	148823994	-	TBFG_12819	-	hypothetical protein
2804	 61.46	-1	3125223..3125414	+	63	148823995	-	TBFG_12820	-	hypothetical protein
2805	 64.33	0	3125613..3126767	+	384	148823996	-	TBFG_12821	-	hypothetical protein
2806	 50.00	-2	3127001..3127258	+	85	148823997	-	TBFG_12822	-	hypothetical protein
2807	 61.86	-1	3127363..3127674	+	103	148823998	-	TBFG_12823	-	hypothetical protein
2808	 63.91	0	3127696..3128094	-	132	148823999	-	TBFG_12824	-	transposase
2809	 72.41	+2	3128094..3128702	+	202	148824000	-	TBFG_12825	-	hypothetical protein
2810	 68.23	0	3128773..3130182	+	469	148824001	-	TBFG_12826	-	transposase
2811	 67.53	0	3130179..3130991	+	270	148824002	-	TBFG_12827	-	hypothetical protein
2812	 63.84	0	3132521..3133405	-	294	148824003	-	TBFG_12828	-	transposase
2813	 65.75	0	3133456..3133782	-	108	148824004	-	TBFG_12829	-	transposase
2814	 55.26	-2	3135254..3135595	-	113	148824005	-	TBFG_12830	-	hypothetical protein
2815	 60.87	-1	3135596..3136612	-	338	148824006	-	TBFG_12831	-	hypothetical protein
2816	 59.62	-1	3136625..3137872	-	415	148824007	-	TBFG_12832	-	hypothetical protein
2817	 59.40	-1	3137869..3138996	-	375	148824008	-	TBFG_12833	-	hypothetical protein
2818	 63.15	0	3138993..3139901	-	302	148824009	-	TBFG_12834	-	hypothetical protein
2819	 61.32	-1	3139882..3140592	-	236	148824010	-	TBFG_12835	-	hypothetical protein
2820	 58.67	-2	3140602..3140976	-	124	148824011	-	TBFG_12836	-	hypothetical protein
2821	 61.46	-1	3140973..3143411	-	812	148824012	-	TBFG_12837	-	hypothetical protein
2822	 62.96	0	3143408..3144352	-	314	148824013	-	TBFG_12838	-	hypothetical protein
2823	 68.83	0	3144530..3145270	-	246	148824014	-	TBFG_12839	-	hypothetical protein
2824	 66.67	0	3145347..3146237	-	296	148824015	-	TBFG_12840	-	hypothetical protein
2825	 68.81	0	3146234..3147121	-	295	148824016	-	TBFG_12841	-	hypothetical protein
2826	 72.34	+2	3147426..3147971	-	181	148824017	-	TBFG_12842	-	hypothetical protein
2827	 74.81	+2	3147968..3148237	-	89	148824018	-	TBFG_12843	-	hypothetical protein
2828	 67.41	0	3148258..3148662	-	134	148824019	-	TBFG_12844	-	hypothetical protein
2829	 62.96	0	3148647..3148862	-	71	148824020	-	TBFG_12845	-	hypothetical protein
2830	 70.53	+1	3148909..3149658	+	249	148824021	-	TBFG_12846	-	enoyl-CoA hydratase
2831	 68.05	0	3149737..3150819	-	360	148824022	-	TBFG_12847	-	sn-glycerol-3-phosphate transport ATP-binding protein ABC transporter ugpC
2832	 64.53	0	3150812..3152122	-	436	148824023	-	TBFG_12848	-	sn-glycerol-3-phosphate-binding lipoprotein ugpB
2833	 62.32	0	3152125..3152952	-	275	148824024	-	TBFG_12849	-	sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpE
2834	 62.61	0	3152949..3153860	-	303	148824025	-	TBFG_12850	-	sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA
2835	 68.95	+1	3153947..3155257	-	436	148824026	-	TBFG_12851	-	DNA-damage-inducible protein F dinF
2836	 66.27	0	3155273..3156283	-	336	148824027	-	TBFG_12852	-	hypothetical protein
2837	 68.12	0	3156258..3156809	-	183	148824028	rbfA	TBFG_12853	-	ribosome-binding factor A
2838	 69.03	+1	3156809..3159511	-	900	148824029	infB	TBFG_12854	-	translation initiation factor IF-2
2839	 64.00	0	3159597..3159896	-	99	148824030	-	TBFG_12855	-	hypothetical protein
2840	 65.23	0	3160023..3161066	-	347	148824031	nusA	TBFG_12856	-	transcription elongation factor NusA
2841	 65.76	0	3161063..3161614	-	183	148824032	-	TBFG_12857	-	hypothetical protein
2842	 69.41	+1	3161809..3162354	+	181	148824033	-	TBFG_12858	-	alanine rich transmembrane protein
2843	 69.12	+1	3162351..3162839	+	162	148824034	-	TBFG_12859	-	hypothetical protein
2844	 65.87	0	3162840..3164588	-	582	148824035	-	TBFG_12860	-	prolyl-tRNA synthetase
2845	 64.91	0	3164677..3166269	-	530	148824036	-	TBFG_12861	-	integral membrane efflux protein efpA
2846	 66.26	0	3166292..3167509	-	405	148824037	-	TBFG_12862	-	multi-functional enzyme siroheme synthase cysG: uroporphyrin-III C-methyltransferase + precorrin-2 oxidase + ferrochelatase
2847	 68.05	0	3167786..3169159	-	457	148824038	-	TBFG_12863	-	cobyrinic acid a,c-diamide synthase
2848	 65.22	0	3169159..3169782	-	207	148824039	-	TBFG_12864	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
2849	 70.48	+1	3169803..3171692	-	629	148824040	-	TBFG_12865	-	magnesium chelatase
2850	 65.61	0	3171689..3172159	-	156	148824041	-	TBFG_12866	-	hypothetical protein
2851	 63.70	0	3172218..3173699	-	493	148824042	-	TBFG_12867	-	malate:quinone oxidoreductase
2852	 72.79	+2	3173762..3175753	+	663	148824043	-	TBFG_12868	-	PE-PGRS family protein
2853	 65.03	0	3175790..3176830	+	346	148824044	-	TBFG_12869	-	hypothetical protein
2854	 62.68	0	3176843..3178222	+	459	148824045	-	TBFG_12870	-	mycothione/glutathione reductase
2855	 63.36	0	3178322..3179440	+	372	148824046	-	TBFG_12871	-	nickel-transport integral membrane protein nicT
2856	 64.26	0	3179506..3179838	+	110	148824047	-	TBFG_12872	-	Ni2+-binding GTPase
2857	 63.71	0	3180221..3180997	-	258	148824048	-	TBFG_12873	-	short chain dehydrogenase
2858	 66.30	0	3180994..3182361	-	455	148824049	-	TBFG_12874	-	aldehyde dehydrogenase aldC
2859	 67.89	0	3182358..3183176	-	272	148824050	-	TBFG_12875	-	amidotransferase
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.