IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
232	 65.85	0	275301..276281	-	326	148821423	-	TBFG_10232	-	phosphotriesterase PHP (parathion hydrolase)
233	 63.56	0	276376..278082	+	568	148821424	-	TBFG_10233	-	acyl-CoA dehydrogenase fadE4
234	 67.10	0	278217..278906	+	229	148821425	-	TBFG_10234	-	TetR/AcrR family transcriptional regulator
235	 64.87	0	278903..279847	+	314	148821426	-	TBFG_10235	-	ribonucleotide-diphosphate reductase subunit beta
236	 66.80	0	279923..281458	-	511	148821427	gabD1	TBFG_10236	-	succinic semialdehyde dehydrogenase
237	 62.73	0	281484..282932	-	482	148821428	-	TBFG_10237	-	transmembrane protein
238	 71.50	+1	282967..287169	-	1400	148821429	-	TBFG_10238	-	transmembrane protein
239	 64.94	0	287216..287389	-	57	148821430	-	TBFG_10239	-	small secreted protein
240	 68.72	0	287504..288670	+	388	148821431	-	TBFG_10240	-	lipoprotein lpqI
241	 63.74	0	288746..289360	+	204	148821432	-	TBFG_10241	-	TetR family transcriptional regulator
242	 65.38	0	289422..289655	+	77	148821433	-	TBFG_10242	-	hypothetical protein
243	 62.79	0	289663..290100	+	145	148821434	-	TBFG_10243	-	hypothetical protein
244	 66.31	0	290130..290972	-	280	148821435	-	TBFG_10244	-	hypothetical protein
245	 67.99	0	290983..292347	-	454	148821436	fabG	TBFG_10245	-	3-ketoacyl-(acyl-carrier-protein) reductase
246	 67.88	0	292489..293811	+	440	148821437	-	TBFG_10246	-	acetyl-CoA acetyltransferase
247	 64.27	0	294115..295950	-	611	148821438	-	TBFG_10247	-	acyl-CoA dehydrogenase fadE5
248	 64.21	0	296322..296810	+	162	148821439	-	TBFG_10248	-	oxidoreductase
249	 60.34	-1	297126..298436	+	436	148821440	-	TBFG_10249	-	integral membrane protein
250	 58.63	-2	298433..299179	-	248	148821441	-	TBFG_10250	-	fumarate reductase iron-sulfur subunit
251	 63.83	0	299180..301120	-	646	148821442	sdhA	TBFG_10251	-	succinate dehydrogenase flavoprotein subunit
252	 58.39	-2	301151..301972	-	273	148821443	-	TBFG_10252	-	succinate dehydrogenase membrane anchor subunit
253	 61.90	-1	302052..302345	-	97	148821444	-	TBFG_10253	-	hypothetical protein
254	 66.67	0	302490..302969	-	159	148821445	-	TBFG_10254	-	heat shock protein hsp (heat-stress-induced ribosome-binding protein A)
255	 65.61	0	303183..305744	+	853	148821446	-	TBFG_10255	-	nitrite reductase NAD(P)H] large subunit
256	 64.71	0	305770..306126	+	118	148821447	-	TBFG_10256	-	nitrite reductase [NAD(P)H] small subunit nirD
257	 67.24	0	306142..306666	-	174	148821448	-	TBFG_10257	-	bifunctional cobalamin biosynthesis protein cobU: cobinamide kinase + cobinamide phosphate guanylyltransferase
258	 69.49	+1	306691..308175	-	494	148821449	-	TBFG_10258	-	cobyric acid synthase
259	 67.09	0	308194..309864	-	556	148821450	-	TBFG_10259	-	PPE family protein
260	 62.13	0	310016..310390	+	124	148821451	-	TBFG_10260	-	hypothetical protein
261	 68.17	0	310254..310586	-	110	148821452	-	TBFG_10261	-	hypothetical protein
262	 62.94	0	310611..311066	-	151	148821453	-	TBFG_10262	-	hypothetical protein
263	 65.99	0	311091..311834	-	247	148821454	-	TBFG_10263	-	hypothetical protein
264	 64.75	0	311831..312976	-	381	148821455	-	TBFG_10264	-	bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein
265	 63.97	0	313076..314485	-	469	148821456	-	TBFG_10265	-	integral membrane nitrite extrusion protein narK3 (nitrite facilitator)
266	 68.13	0	314626..315171	-	181	148821457	-	TBFG_10266	-	aminoglycoside 2-N-acetyltransferase aac
267	 68.33	0	315181..316083	-	300	148821458	-	TBFG_10267	-	hypothetical protein
268	 68.20	0	316100..316753	-	217	148821459	-	TBFG_10268	-	hypothetical protein
269	 66.26	0	316828..317820	-	330	148821460	-	TBFG_10269	-	periplasmic iron-transport lipoprotein
270	 68.71	0	317842..321471	-	1209	148821461	-	TBFG_10270	-	5-oxoprolinase oplA
271	 65.45	0	321648..323039	+	463	148821462	-	TBFG_10271	-	integral membrane nitrite extrusion protein narU (nitrite facilitator)
272	 61.96	-1	323081..323590	-	169	148821463	-	TBFG_10272	-	hypothetical protein
273	 69.26	+1	323655..324848	-	397	148821464	-	TBFG_10273	-	hypothetical protein
274	 64.59	0	324884..326566	+	560	148821465	-	TBFG_10274	-	acyl-CoA synthetase
275	 66.71	0	326583..328778	-	731	148821466	-	TBFG_10275	-	acyl-CoA dehydrogenase fadE6
276	 65.08	0	328892..330025	-	377	148821467	-	TBFG_10276	-	hypothetical protein
277	 61.84	-1	330022..330642	-	206	148821468	-	TBFG_10277	-	transcriptional regulator
278	 63.14	0	330697..331320	+	207	148821469	-	TBFG_10278	-	hypothetical protein
279	 68.04	0	331250..331975	-	241	148821470	-	TBFG_10279	-	TetR family transcriptional regulator
280	 66.88	0	332065..332985	+	306	148821471	-	TBFG_10280	-	hypothetical protein
281	 62.47	0	333025..333453	-	142	148821472	-	TBFG_10281	-	hypothetical protein
282	 66.67	0	333477..333650	-	57	148821473	-	TBFG_10282	-	hypothetical protein
283	 76.49	+2	333754..335433	-	559	148821474	-	TBFG_10283	-	PE-PGRS family protein
284	 78.28	+2	335370..336488	-	372	148821475	-	TBFG_10284	-	PE-PGRS family protein
285	 77.91	+2	336752..339472	-	906	148821476	-	TBFG_10285	-	PE-PGRS family protein
286	 77.88	+2	339701..342214	-	837	148821477	-	TBFG_10286	-	PE-PGRS family protein
287	 69.40	+1	342505..344115	+	536	148821478	-	TBFG_10287	-	PPE family protein
288	 66.89	0	344139..345047	+	302	148821479	-	TBFG_10288	-	hypothetical protein
289	 64.82	0	345271..347166	+	631	148821480	-	TBFG_10289	-	hypothetical protein
290	 68.03	0	347163..348779	+	538	148821481	-	TBFG_10290	-	hypothetical protein
291	 65.72	0	348776..352768	+	1330	148821482	-	TBFG_10291	-	hypothetical protein
292	 73.14	+2	352765..353073	+	102	148821483	-	TBFG_10292	-	PE family protein
293	 67.83	0	353076..354617	+	513	148821484	-	TBFG_10293	-	PPE family protein
294	 65.65	0	354666..354959	+	97	148821485	-	TBFG_10294	-	Esat-6 like protein esxG
295	 62.54	0	354989..355279	+	96	148821486	-	TBFG_10295	-	putative antigen
296	 66.22	0	355290..356177	+	295	148821487	-	TBFG_10296	-	hypothetical protein
297	 68.08	0	356224..357642	+	472	148821488	-	TBFG_10297	-	transmembrane protein
298	 70.13	+1	357639..359024	+	461	148821489	-	TBFG_10298	-	membrane-anchored mycosin mycP3
299	 68.78	0	359021..360016	+	331	148821490	-	TBFG_10299	-	transmembrane protein
300	 63.92	0	360003..361205	-	400	148821491	-	TBFG_10300	-	hypothetical protein
301	 65.90	0	361312..362097	+	261	148821492	-	TBFG_10301	-	trans-aconitate methyltransferase tam
302	 65.92	0	362086..362889	-	267	148821493	-	TBFG_10302	-	hypothetical protein
303	 64.66	0	362899..364296	-	465	148821494	-	TBFG_10303	-	sulfatase
304	 76.24	+2	364382..366250	+	622	148821495	-	TBFG_10304	-	PE-PGRS family protein
305	 63.16	0	366393..366620	+	75	148821496	-	TBFG_10305	-	hypothetical protein
306	 67.99	0	366617..366919	+	100	148821497	-	TBFG_10306	-	hypothetical protein
307	 62.44	0	367185..367610	+	141	148821498	-	TBFG_10307	-	hypothetical protein
308	 65.72	0	367746..368378	+	210	148821499	-	TBFG_10308	-	TetR/AcrR family transcriptional regulator
309	 67.33	0	368375..369283	+	302	148821500	-	TBFG_10309	-	dehydrogenase/reductase
310	 61.50	-1	369291..378791	-	3166	148821501	-	TBFG_10310	-	PPE family protein
311	 66.07	0	378994..379665	+	223	148821502	-	TBFG_10311	-	oxidoreductase
312	 65.01	0	379653..380135	-	160	148821503	-	TBFG_10312	-	hypothetical protein
313	 61.51	-1	380193..380909	+	238	148821504	-	TBFG_10313	-	integral membrane protein
314	 62.86	0	381011..381667	+	218	148821505	-	TBFG_10314	-	hypothetical protein
315	 62.40	0	381737..382228	-	163	148821506	-	TBFG_10315	-	hypothetical protein
316	 64.23	0	382252..383481	+	409	148821507	-	TBFG_10316	-	hypothetical protein
317	 65.70	0	383636..385498	+	620	148821508	-	TBFG_10317	-	proline and threonine rich protein
318	 66.15	0	385570..385956	+	128	148821509	-	TBFG_10318	-	hypothetical protein
319	 66.52	0	385959..386621	-	220	148821510	-	TBFG_10319	-	hypothetical protein
320	 65.54	0	386682..387566	+	294	148821511	-	TBFG_10320	-	beta-1,3-glucanase precursor
321	 70.41	+1	387615..388229	+	204	148821512	-	TBFG_10321	-	muconolactone isomerase
322	 64.98	0	388253..389023	-	256	148821513	-	TBFG_10322	-	glycerophosphoryl diester phosphodiesterase glpQ2
323	 65.79	0	389385..390179	-	264	148821514	-	TBFG_10323	-	integral membrane protein
324	 65.92	0	390228..390896	+	222	148821515	-	TBFG_10324	-	pyrrolidone-carboxylate peptidase
325	 63.80	0	390968..391630	+	220	148821516	-	TBFG_10325	-	hypothetical protein
326	 63.18	0	391662..392234	+	190	148821517	dcd	TBFG_10326	-	deoxycytidine triphosphate deaminase
327	 64.94	0	392340..393671	+	443	148821518	-	TBFG_10327	-	UDP-glucose 6-dehydrogenase udgA
328	 65.18	0	393660..394331	-	223	148821519	-	TBFG_10328	-	hypothetical protein
329	 67.55	0	394432..395112	+	226	148821520	-	TBFG_10329	-	ArsR family transcriptional regulator
330	 64.00	0	395119..395343	+	74	148821521	-	TBFG_10330	-	hypothetical protein
331	 63.82	0	395353..395808	+	151	148821522	-	TBFG_10331	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.