IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2715	 62.42	0	3041822..3042316	-	164	148823906	-	TBFG_12731	-	hypothetical protein
2716	 64.52	0	3042368..3042832	-	154	148823907	-	TBFG_12732	-	transcriptional regulator NrdR
2717	 70.88	+1	3042995..3043492	-	165	148823908	-	TBFG_12733	-	hypothetical protein
2718	 66.67	0	3043800..3044453	+	217	148823909	-	TBFG_12734	-	LexA repressor
2719	 65.24	0	3044475..3046574	-	699	148823910	-	TBFG_12735	-	hypothetical protein
2720	 59.88	-1	3046864..3048057	+	397	148823911	-	TBFG_12736	-	integral membrane protein
2721	 60.21	-1	3048086..3049246	-	386	148823912	-	TBFG_12737	-	acyl-CoA dehydrogenase fadE20
2722	 67.61	0	3049382..3050869	-	495	148823913	-	TBFG_12738	-	GTP-binding protein hflX
2723	 68.16	0	3050886..3051755	-	289	148823914	dapF	TBFG_12739	-	diaminopimelate epimerase
2724	 68.68	0	3051780..3052724	-	314	148823915	miaA	TBFG_12740	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2725	 70.40	+1	3052721..3053416	-	231	148823916	-	TBFG_12741	-	hypothetical protein
2726	 65.34	0	3053525..3054430	-	301	148823917	-	TBFG_12742	-	alanine, valine and leucine rich integral membrane protein
2727	 60.38	-1	3054497..3054973	+	158	148823918	-	TBFG_12743	-	hypothetical protein
2728	 69.11	+1	3054981..3056333	+	450	148823919	-	TBFG_12744	-	hypothetical protein
2729	 68.46	0	3056330..3056944	-	204	148823920	-	TBFG_12745	-	transmembrane protein
2730	 69.92	+1	3056941..3058479	-	512	148823921	-	TBFG_12746	-	hypothetical protein
2731	 58.25	-2	3058776..3059630	+	284	148823922	-	TBFG_12747	-	hypothetical protein
2732	 56.50	-2	3059515..3060507	-	330	148823923	-	TBFG_12748	-	hypothetical protein
2733	 70.10	+1	3060517..3061041	-	174	148823924	recX	TBFG_12749	-	recombination regulator RecX
2734	 63.25	0	3061007..3063379	-	790	148823925	recA	TBFG_12750	-	recombinase A
2735	 68.39	0	3063574..3063747	+	57	148823926	-	TBFG_12751	-	cysteine rich protein
2736	 73.44	+2	3063978..3065144	-	388	148823927	-	TBFG_12752	-	hypothetical protein
2737	 65.11	0	3065188..3065637	+	149	148823928	-	TBFG_12753	-	hypothetical protein
2738	 73.97	+2	3065749..3067446	+	565	148823929	-	TBFG_12754	-	PE-PGRS family protein
2739	 66.91	0	3067470..3068303	-	277	148823930	-	TBFG_12755	-	arginine rich protein
2740	 69.25	+1	3068375..3069187	-	270	148823931	-	TBFG_12756	-	alanine rich transmembrane protein
2741	 63.35	0	3069206..3070018	-	270	148823932	-	TBFG_12757	-	35 kDa alanine rich protein
2742	 67.55	0	3070148..3070486	-	112	148823933	-	TBFG_12758	-	transcriptional regulator
2743	 61.90	-1	3070557..3071186	-	209	148823934	-	TBFG_12759	-	phosphatidylglycerophosphate synthase pgsA3
2744	 61.90	-1	3071217..3071741	+	174	148823935	-	TBFG_12760	-	N-acetylglutamate synthase
2745	 67.68	0	3071810..3074461	-	883	148823937	-	TBFG_12761	-	cell division transmembrane protein ftsK
2746	 68.57	0	3074460..3074774	+	104	148823936	-	TBFG_12762	-	hypothetical protein
2747	 65.81	0	3074771..3075589	+	272	148823938	-	TBFG_12763	-	3-ketoacyl-(acyl-carrier-protein) reductase
2748	 63.75	0	3075593..3076483	+	296	148823939	-	TBFG_12764	-	hypothetical protein
2749	 63.63	0	3076470..3078146	-	558	148823940	-	TBFG_12765	-	hypothetical protein
2750	 68.66	0	3078177..3079079	-	300	148823941	-	TBFG_12766	-	dihydrodipicolinate synthase
2751	 69.06	+1	3079148..3079900	-	250	148823942	thyX	TBFG_12767	-	FAD-dependent thymidylate synthase
2752	 58.70	-1	3080144..3080419	-	91	148823943	-	TBFG_12768	-	type I restriction/modification system specificity determinant hsdS.1
2753	 61.92	-1	3080416..3082038	-	540	148823944	-	TBFG_12769	-	type I restriction/modification system DNA methylase hsdM
2754	 61.39	-1	3082125..3082541	-	138	148823945	-	TBFG_12770	-	hypothetical protein
2755	 62.17	0	3082538..3082804	-	88	148823946	-	TBFG_12771	-	hypothetical protein
2756	 66.92	0	3082830..3083225	-	131	148823947	-	TBFG_12772	-	hypothetical protein
2757	 69.63	+1	3083222..3083491	-	89	148823948	-	TBFG_12773	-	hypothetical protein
2758	 63.65	0	3083501..3084595	-	364	148823949	-	TBFG_12774	-	type I restriction/modification system specificity determinant hsdS
2759	 70.71	+1	3084592..3085011	-	139	148823950	-	TBFG_12775	-	hypothetical protein
2760	 67.08	0	3085085..3085564	-	159	148823951	-	TBFG_12776	-	dihydrofolate reductase dfrA (tetrahydrofolate dehydrogenase)
2761	 60.10	-1	3085635..3086426	-	263	148823952	thyA	TBFG_12777	-	thymidylate synthase
2762	 66.40	0	3086591..3087328	+	245	148823953	-	TBFG_12778	-	hypothetical protein
2763	 66.41	0	3087543..3088325	-	260	148823954	fabG	TBFG_12779	-	3-ketoacyl-(acyl-carrier-protein) reductase
2764	 68.73	0	3088558..3088848	-	96	148823955	-	TBFG_12780	-	hypothetical protein
2765	 66.33	0	3088849..3090033	-	394	148823956	-	TBFG_12781	-	PPE family protein
2766	 68.48	0	3090113..3090940	-	275	148823957	-	TBFG_12782	-	PE family protein
2767	 66.49	0	3091264..3092412	-	382	148823958	-	TBFG_12783	-	PPE family protein
2768	 63.13	0	3092536..3092988	-	150	148823959	-	TBFG_12784	-	hypothetical protein
2769	 68.99	+1	3093074..3093547	-	157	148823960	-	TBFG_12785	-	transmembrane protein
2770	 64.63	0	3093559..3094296	-	245	148823961	-	TBFG_12786	-	dihydrodipicolinate reductase
2771	 65.43	0	3094307..3094711	-	134	148823962	-	TBFG_12787	-	hypothetical protein
2772	 57.35	-2	3094768..3095325	+	185	148823963	-	TBFG_12788	-	hypothetical protein
2773	 67.95	0	3095329..3096420	-	363	148823964	-	TBFG_12789	-	oxidoreductase
2774	 62.46	0	3096440..3097510	-	356	148823965	-	TBFG_12790	-	hypothetical protein
2775	 62.42	0	3097668..3098138	-	156	148823966	-	TBFG_12791	-	hypothetical protein
2776	 60.37	-1	3098170..3098709	-	179	148823967	-	TBFG_12792	-	Lrp/Asn family transcriptional regulator
2777	 64.16	0	3098775..3099890	+	371	148823968	-	TBFG_12793	-	secreted L-alanine dehydrogenase ald (40 kDa antigen)
2778	 68.60	0	3099905..3100939	-	344	148823969	-	TBFG_12794	-	hypothetical protein
2779	 68.56	0	3101000..3102316	-	438	148823970	-	TBFG_12795	-	zinc protease pepR
2780	 65.47	0	3102294..3104552	-	752	148823971	-	TBFG_12796	-	polynucleotide phosphorylase/polyadenylase
2781	 66.67	0	3104906..3105421	-	171	148823972	-	TBFG_12797	-	lipoprotein lppU
2782	 60.37	-1	3105434..3105703	-	89	148823973	rpsO	TBFG_12798	-	30S ribosomal protein S15
2783	 66.16	0	3105860..3106855	-	331	148823974	-	TBFG_12799	-	bifunctional riboflavin kinase/FMN adenylyltransferase
2784	 62.30	0	3107066..3108829	+	587	148823975	-	TBFG_12800	-	hypothetical protein
2785	 68.12	0	3108914..3109600	+	228	148823976	-	TBFG_12801	-	transcriptional repressor sirR
2786	 63.18	0	3109661..3110893	-	410	148823977	-	TBFG_12802	-	acyl-CoA dehydrogenase fadE21
2787	 64.18	0	3110919..3112124	-	401	148823978	-	TBFG_12803	-	lipid-transfer protein
2788	 66.45	0	3112157..3113536	-	459	148823979	-	TBFG_12804	-	transposase
2789	 67.70	0	3113536..3114117	-	193	148823980	-	TBFG_12805	-	resolvase
2790	 70.23	+1	3114319..3115215	-	298	148823981	truB	TBFG_12806	-	tRNA pseudouridine synthase B
2791	 66.37	0	3115212..3115895	-	227	148823982	-	TBFG_12807	-	hypothetical protein
2792	 65.85	0	3115892..3116866	-	324	148823983	-	TBFG_12808	-	hypothetical protein
2793	 66.49	0	3117011..3117574	-	187	148823984	-	TBFG_12809	-	lipoprotein lppV
2794	 69.15	+1	3117574..3119262	-	562	148823985	-	TBFG_12810	-	hypothetical protein
2795	 67.89	0	3119266..3119592	-	108	148823986	-	TBFG_12811	-	hypothetical protein
2796	 66.51	0	3119723..3120352	+	209	148823987	-	TBFG_12812	-	hypothetical protein
2797	 70.91	+1	3120371..3122020	+	549	148823988	-	TBFG_12813	-	hydrolase
2798	 62.18	0	3122122..3122478	-	118	148823989	-	TBFG_12814	-	hypothetical protein
2799	 64.07	0	3122462..3122692	-	76	148823990	-	TBFG_12815	-	transcriptional regulator
2800	 71.84	+1	3122735..3123778	-	347	148823992	-	TBFG_12816	-	hypothetical protein
2801	 66.03	0	3123777..3124244	+	155	148823991	-	TBFG_12817	-	hypothetical protein
2802	 71.04	+1	3124384..3124749	+	121	148823993	-	TBFG_12818	-	histone acetyltransferase
2803	 67.36	0	3124795..3125226	+	143	148823994	-	TBFG_12819	-	hypothetical protein
2804	 61.46	-1	3125223..3125414	+	63	148823995	-	TBFG_12820	-	hypothetical protein
2805	 64.33	0	3125613..3126767	+	384	148823996	-	TBFG_12821	-	hypothetical protein
2806	 50.00	-2	3127001..3127258	+	85	148823997	-	TBFG_12822	-	hypothetical protein
2807	 61.86	-1	3127363..3127674	+	103	148823998	-	TBFG_12823	-	hypothetical protein
2808	 63.91	0	3127696..3128094	-	132	148823999	-	TBFG_12824	-	transposase
2809	 72.41	+2	3128094..3128702	+	202	148824000	-	TBFG_12825	-	hypothetical protein
2810	 68.23	0	3128773..3130182	+	469	148824001	-	TBFG_12826	-	transposase
2811	 67.53	0	3130179..3130991	+	270	148824002	-	TBFG_12827	-	hypothetical protein
2812	 63.84	0	3132521..3133405	-	294	148824003	-	TBFG_12828	-	transposase
2813	 65.75	0	3133456..3133782	-	108	148824004	-	TBFG_12829	-	transposase
2814	 55.26	-2	3135254..3135595	-	113	148824005	-	TBFG_12830	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.