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IslandPath Analysis: Mycobacterium tuberculosis F11

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40

Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2613	 66.23	0	2951182..2952318	-	378	148823804	-	TBFG_12629	-	alpha-mannosyltransferase pimA
2614	 68.03	0	2952329..2953279	-	316	148823805	-	TBFG_12630	-	lipid A biosynthesis lauroyl acyltransferase
2615	 67.58	0	2953276..2953929	-	217	148823806	-	TBFG_12631	-	phosphatidylinositol synthase pgsA1
2616	 63.78	0	2953926..2954513	-	195	148823807	-	TBFG_12632	-	hypothetical protein
2617	 66.04	0	2954506..2956584	-	692	148823808	thrS	TBFG_12633	-	threonyl-tRNA synthetase
2618	 73.38	+2	2956917..2958302	-	461	148823809	-	TBFG_12634	-	PE-PGRS family protein
2619	 68.66	0	2958647..2959147	+	166	148823810	-	TBFG_12635	-	hypothetical protein
2620	 62.81	0	2959164..2959604	-	146	148823811	-	TBFG_12636	-	hypothetical protein
2621	 69.55	+1	2959700..2960428	+	242	148823812	-	TBFG_12637	-	hypothetical protein
2622	 65.82	0	2960413..2960766	-	117	148823813	-	TBFG_12638	-	hypothetical protein
2623	 64.08	0	2960779..2961204	-	141	148823814	-	TBFG_12639	-	transmembrane protein
2624	 68.74	0	2961201..2961875	-	224	148823815	-	TBFG_12640	-	transcriptional regulator
2625	 67.76	0	2961953..2962774	+	273	148823816	-	TBFG_12641	-	methyltransferase
2626	 66.11	0	2962910..2963803	+	297	148823817	-	TBFG_12642	-	hypothetical protein
2627	 64.35	0	2963806..2964624	-	272	148823818	-	TBFG_12643	-	hypothetical protein
2628	 65.99	0	2964639..2965820	-	393	148823819	-	TBFG_12644	-	hypothetical protein
2629	 61.81	-1	2965879..2966310	-	143	148823820	-	TBFG_12645	-	hypothetical protein
2630	 62.08	0	2966824..2968065	-	413	148823821	-	TBFG_12646	-	hypothetical protein
2631	 63.64	0	2968375..2968737	+	120	148823822	-	TBFG_12647	-	hypothetical protein
2632	 64.09	0	2969084..2970208	+	374	148823823	-	TBFG_12648	-	hypothetical protein
2633	 65.00	0	2970210..2970749	+	179	148823824	-	TBFG_12649	-	hypothetical protein
2634	 65.67	0	2970889..2972187	+	432	148823825	-	TBFG_12650	-	hypothetical protein
2635	 60.64	-1	2972226..2972507	-	93	148823826	-	TBFG_12651	-	hypothetical protein
2636	 60.91	-1	2972652..2973137	-	161	148823827	-	TBFG_12652	-	hypothetical protein
2637	 74.31	+2	2973422..2975788	-	788	148823828	-	TBFG_12653	-	PE-PGRS family protein
2638	 63.42	0	2976030..2976707	+	225	148823829	-	TBFG_12654	-	hypothetical protein
2639	 67.43	0	2976903..2977559	+	218	148823830	-	TBFG_12655	-	transmembrane protein dedA
2640	 68.23	0	2977722..2978168	+	148	148823831	-	TBFG_12656	-	hypothetical protein
2641	 66.07	0	2978343..2978675	-	110	148823832	-	TBFG_12657	-	hypothetical protein
2642	 68.06	0	2978795..2979154	-	119	148823833	-	TBFG_12658	-	ArsR family transcriptional regulator
2643	 63.83	0	2979256..2979714	+	152	148823834	-	TBFG_12659	-	cadmium inducible protein cadI
2644	 67.72	0	2979850..2980230	+	126	148823835	-	TBFG_12660	-	ArsR family transcriptional regulator
2645	 65.93	0	2980227..2981723	+	498	148823836	-	TBFG_12661	-	arsenic-transport integral membrane protein arsC
2646	 62.65	0	2981727..2982149	+	140	148823837	-	TBFG_12662	-	hypothetical protein
2647	 71.99	+1	2983440..2983871	+	143	148823838	-	TBFG_12663	-	hypothetical protein
2648	 67.47	0	2983868..2984866	+	332	148823839	-	TBFG_12664	-	integrase
2649	 65.16	0	2984880..2985344	+	154	148823840	-	TBFG_12665	-	hypothetical protein
2650	 67.64	0	2985754..2987193	-	479	148823841	-	TBFG_12666	-	phiRv2 prophage protein
2651	 65.92	0	2987201..2987734	-	177	148823842	-	TBFG_12667	-	phiRv2 prophage protease
2652	 68.29	0	2987887..2988378	-	163	148823843	-	TBFG_12668	-	phiRv2 prophage protein
2653	 65.43	0	2988545..2988868	-	107	148823844	-	TBFG_12669	-	phiRv2 prophage protein
2654	 77.64	+2	2988948..2989193	-	81	148823845	-	TBFG_12670	-	phiRv2 prophage protein
2655	 66.74	0	2989190..2990617	-	475	148823846	-	TBFG_12671	-	phiRv2 prophage protein
2656	 71.76	+1	2990619..2991011	-	130	148823847	-	TBFG_12672	-	phiRv2 prophage protein
2657	 68.20	0	2991008..2991268	-	86	148823848	-	TBFG_12673	-	phiRv2 prophage protein
2658	 59.50	-1	2991285..2991647	-	120	148823849	-	TBFG_12674	-	phiRv2 prophage protein
2659	 64.89	0	2991650..2992777	-	375	148823850	-	TBFG_12675	-	phiRv2 prophage integrase
2660	 59.65	-1	2992922..2993149	-	75	148823851	-	TBFG_12676	-	hypothetical protein
2661	 67.69	0	2993146..2993535	-	129	148823852	-	TBFG_12677	-	hypothetical protein
2662	 60.68	-1	2993812..2994045	+	77	148823853	-	TBFG_12678	-	hypothetical protein
2663	 67.45	0	2994056..2994310	+	84	148823854	-	TBFG_12679	-	hypothetical protein
2664	 70.57	+1	2994658..2994939	+	93	148823855	-	TBFG_12680	-	hypothetical protein
2665	 67.04	0	2995030..2995833	+	267	148823856	-	TBFG_12681	-	hypothetical protein
2666	 67.59	0	2995855..2996613	+	252	148823857	-	TBFG_12682	-	ATP-dependent protease ATP-binding subunit clpC2
2667	 68.58	0	2996692..2997213	+	173	148823858	-	TBFG_12683	-	hypothetical protein
2668	 64.76	0	2997242..2997712	+	156	148823859	-	TBFG_12684	-	hypothetical protein
2669	 64.95	0	2997690..2998799	-	369	148823861	-	TBFG_12685	-	hypothetical protein
2670	 67.18	0	2998798..2999574	+	258	148823860	-	TBFG_12686	-	hypothetical protein
2671	 68.06	0	2999650..3001227	+	525	148823862	-	TBFG_12687	-	protease
2672	 63.29	0	3001250..3002551	+	433	148823863	-	TBFG_12688	-	integral membrane protein
2673	 63.26	0	3002610..3003020	+	136	148823864	-	TBFG_12689	-	hypothetical protein
2674	 67.07	0	3003088..3003840	-	250	148823865	-	TBFG_12690	-	hypothetical protein
2675	 66.24	0	3003837..3004532	-	231	148823866	-	TBFG_12691	-	hypothetical protein
2676	 72.33	+2	3004538..3005896	-	452	148823867	-	TBFG_12692	-	protoporphyrinogen oxidase
2677	 69.46	+1	3005893..3006966	-	357	148823868	hemE	TBFG_12693	-	uroporphyrinogen decarboxylase
2678	 68.11	0	3007019..3007849	+	276	148823869	-	TBFG_12694	-	enoyl-CoA hydratase
2679	 69.47	+1	3007907..3008692	+	261	148823870	-	TBFG_12695	-	hypothetical protein
2680	 68.64	0	3008694..3010010	+	438	148823871	-	TBFG_12696	-	hypothetical protein
2681	 67.24	0	3010007..3011923	-	638	148823872	-	TBFG_12697	-	1-deoxy-D-xylulose-5-phosphate synthase
2682	 62.65	0	3012067..3012564	+	165	148823873	-	TBFG_12698	-	hypothetical protein
2683	 62.87	0	3012569..3013858	+	429	148823874	-	TBFG_12699	-	arsenic-transport integral membrane protein arsA
2684	 64.10	0	3013938..3015224	+	428	148823875	-	TBFG_12700	-	arsenic-transport integral membrane protein arsB1
2685	 63.90	0	3015235..3015993	-	252	148823876	-	TBFG_12701	-	antibiotic ABC transporter integral membrane protein
2686	 64.43	0	3015990..3016703	-	237	148823877	-	TBFG_12702	-	antibiotic ABC transporter integral membrane protein
2687	 67.11	0	3016700..3017605	-	301	148823878	-	TBFG_12703	-	antibiotic ABC transporter ATP-binding protein
2688	 67.90	0	3017800..3019017	-	405	148823879	-	TBFG_12704	-	hypothetical protein
2689	 63.58	0	3019191..3021164	-	657	148823880	-	TBFG_12705	-	alanine, valine and leucine rich integral membrane protein
2690	 65.64	0	3021299..3021982	+	227	148823881	-	TBFG_12706	-	trk system potassium uptake protein ceoB
2691	 66.37	0	3021979..3022641	+	220	148823882	-	TBFG_12707	-	trk system potassium uptake protein ceoC
2692	 66.22	0	3022652..3023323	-	223	148823883	-	TBFG_12708	-	hypothetical protein
2693	 63.69	0	3023354..3023722	-	122	148823884	-	TBFG_12709	-	hypothetical protein
2694	 71.75	+1	3023871..3024578	+	235	148823885	-	TBFG_12710	-	hypothetical protein
2695	 68.59	0	3024784..3025563	-	259	148823886	-	TBFG_12711	-	hypothetical protein
2696	 68.17	0	3025638..3026102	-	154	148823887	dut	TBFG_12712	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
2697	 65.84	0	3026128..3026613	+	161	148823888	-	TBFG_12713	-	alanine rich membrane protein
2698	 61.72	-1	3026618..3026920	-	100	148823889	-	TBFG_12714	-	hypothetical protein
2699	 67.13	0	3027158..3027808	+	216	148823890	-	TBFG_12715	-	secreted alanine rich protein
2700	 68.27	0	3027818..3028690	-	290	148823891	-	TBFG_12716	-	extragenic suppressor protein suhB
2701	 64.41	0	3028813..3029610	+	265	148823892	-	TBFG_12717	-	polyphosphate glucokinase ppgK
2702	 66.23	0	3029790..3031376	+	528	148823893	-	TBFG_12718	-	RNA polymerase sigma factor
2703	 65.73	0	3031413..3031841	+	142	148823894	-	TBFG_12719	-	hypothetical protein
2704	 65.90	0	3031769..3032158	-	129	148823895	-	TBFG_12720	-	hypothetical protein
2705	 62.56	0	3032528..3033502	+	324	148823896	-	TBFG_12721	-	hypothetical protein
2706	 59.12	-1	3033503..3033820	-	105	148823898	-	TBFG_12722	-	hypothetical protein
2707	 66.22	0	3033794..3034240	+	148	148823897	-	TBFG_12723	-	transmembrane protein
2708	 63.10	0	3034350..3035387	+	345	148823899	-	TBFG_12724	-	RNA polymerase sigma factor SigB
2709	 66.52	0	3035520..3036212	+	230	148823900	-	TBFG_12725	-	iron-dependent repressor and activator ideR
2710	 67.52	0	3036225..3037283	-	352	148823901	-	TBFG_12726	-	hypothetical protein
2711	 63.54	0	3037396..3038802	+	468	148823902	-	TBFG_12727	-	soluble pyridine nucleotide transhydrogenase
2712	 63.18	0	3039020..3039994	+	324	148823903	-	TBFG_12728	-	hypothetical protein
65.47	MEAN

3.40	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.