IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2496	 77.80	+2	2814571..2818809	-	1412	148823687	-	TBFG_12512	-	PE-PGRS family protein
2497	 73.99	+2	2818727..2819545	-	272	148823688	-	TBFG_12513	-	PE-PGRS family protein
2498	 59.46	-1	2819983..2820606	+	207	148823689	-	TBFG_12514	-	hypothetical protein
2499	 51.00	-2	2820596..2821348	+	250	148823690	-	TBFG_12515	-	hypothetical protein
2500	 65.96	0	2821628..2822053	+	141	148823691	-	TBFG_12516	-	hypothetical protein
2501	 65.48	0	2822076..2823257	-	393	148823692	-	TBFG_12517	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2502	 63.90	0	2823254..2824300	-	348	148823693	-	TBFG_12518	-	pyruvate dehydrogenase E1 component beta subunit pdhB
2503	 64.40	0	2824311..2825414	-	367	148823694	-	TBFG_12519	-	pyruvate dehydrogenase E1 component alpha subunit pdhA
2504	 67.76	0	2825673..2826494	-	273	148823695	-	TBFG_12520	-	citrate lyase beta subunit citE
2505	 62.19	0	2826491..2827048	-	185	148823696	-	TBFG_12521	-	oxidase regulatory-like protein
2506	 61.52	-1	2827045..2828229	-	394	148823697	-	TBFG_12522	-	acyl-CoA dehydrogenase fadE19
2507	 67.63	0	2828234..2830198	-	654	148823698	-	TBFG_12523	-	acetyl-/propionyl-coenzyme A carboxylase subunit alpha
2508	 65.79	0	2830203..2831792	-	529	148823699	-	TBFG_12524	-	acetyl-/propionyl-CoA carboxylase beta subunit accD1
2509	 63.93	0	2831789..2832445	-	218	148823700	-	TBFG_12525	-	succinyl-CoA:3-ketoacid-coenzyme A transferase beta subunit scoB
2510	 65.46	0	2832442..2833188	-	248	148823701	-	TBFG_12526	-	succinyl-CoA:3-ketoacid-coenzyme A transferase alpha subunit scoA
2511	 64.48	0	2833271..2834914	-	547	148823702	-	TBFG_12527	-	acyl-CoA synthetase
2512	 66.82	0	2835030..2835677	+	215	148823703	-	TBFG_12528	-	TetR family transcriptional regulator
2513	 67.27	0	2835756..2836577	+	273	148823704	-	TBFG_12529	-	proline rich membrane protein
2514	 67.26	0	2836574..2837911	-	445	148823705	-	TBFG_12530	-	leucine and alanine rich integral membrane protein
2515	 65.80	0	2837996..2838802	+	268	148823706	-	TBFG_12531	-	short-chain type dehydrogenase/reductase
2516	 66.29	0	2838806..2840407	-	533	148823707	-	TBFG_12532	-	hypothetical protein
2517	 65.43	0	2840475..2841122	+	215	148823708	-	TBFG_12533	-	oligoribonuclease
2518	 66.51	0	2841874..2843121	-	415	148823709	-	TBFG_12534	-	transposase
2519	 62.65	0	2843479..2843901	+	140	148823710	-	TBFG_12535	-	hypothetical protein
2520	 62.12	0	2844195..2844656	-	153	148823711	-	TBFG_12536	-	hypothetical protein
2521	 65.79	0	2844662..2845909	-	415	148823712	-	TBFG_12537	-	hypothetical protein
2522	 61.19	-1	2846028..2846831	-	267	148823713	-	TBFG_12538	-	hypothetical protein
2523	 65.20	0	2847427..2848653	-	408	148823714	-	TBFG_12539	-	lipoprotein lppS
2524	 65.25	0	2849103..2850581	+	492	148823715	-	TBFG_12540	-	PE family protein
2525	 62.72	0	2850706..2850933	-	75	148823716	-	TBFG_12541	-	hypothetical protein
2526	 62.87	0	2851002..2851475	+	157	148823717	-	TBFG_12542	-	bacterioferritin comigratory protein bcp
2527	 68.51	0	2851447..2852859	-	470	148823718	-	TBFG_12543	-	hypothetical protein
2528	 68.70	0	2852856..2853248	-	130	148823719	acpS	TBFG_12544	-	4'-phosphopantetheinyl transferase
2529	 69.24	+1	2853441..2862650	-	3069	148823720	-	TBFG_12545	-	fatty acid synthase fas
2530	 65.84	0	2863170..2863892	-	240	148823721	-	TBFG_12546	-	hypothetical protein
2531	 61.44	-1	2864633..2865034	+	133	148823722	-	TBFG_12547	-	hypothetical protein
2532	 63.74	0	2865069..2865989	-	306	148823723	-	TBFG_12548	-	restriction system protein mrr
2533	 69.90	+1	2866193..2867584	+	463	148823724	-	TBFG_12549	-	hypothetical protein
2534	 62.86	0	2867585..2868004	-	139	148823725	-	TBFG_12550	-	hypothetical protein
2535	 63.54	0	2868256..2871099	-	947	148823726	-	TBFG_12551	-	amino acid decarboxylase
2536	 67.91	0	2871171..2871572	-	133	148823727	-	TBFG_12552	-	hypothetical protein
2537	 70.28	+1	2871572..2872042	-	156	148823728	nusB	TBFG_12553	-	transcription antitermination protein NusB
2538	 64.18	0	2872045..2872608	-	187	148823729	-	TBFG_12554	-	elongation factor P
2539	 67.02	0	2872618..2873736	-	372	148823730	-	TBFG_12555	-	cytoplasmic peptidase pepQ
2540	 66.96	0	2873770..2874462	+	230	148823731	-	TBFG_12556	-	transmembrane protein
2541	 66.22	0	2874466..2874909	-	147	148823732	-	TBFG_12557	-	3-dehydroquinate dehydratase
2542	 68.69	0	2874906..2875994	-	362	148823733	aroB	TBFG_12558	-	3-dehydroquinate synthase
2543	 72.69	+2	2875991..2876521	-	176	148823734	aroK	TBFG_12559	-	shikimate kinase
2544	 73.30	+2	2876525..2877730	-	401	148823735	-	TBFG_12560	-	chorismate synthase
2545	 78.19	+2	2877745..2878152	+	135	148823736	-	TBFG_12561	-	hypothetical protein
2546	 67.74	0	2878448..2879659	+	403	148823737	-	TBFG_12562	-	hypothetical protein
2547	 61.06	-1	2879786..2880445	+	219	148823738	-	TBFG_12563	-	lipoprotein lppA
2548	 59.43	-1	2880442..2881104	+	220	148823739	-	TBFG_12564	-	lipoprotein lppB
2549	 61.29	-1	2881101..2881379	+	92	148823740	-	TBFG_12565	-	hypothetical protein
2550	 64.49	0	2881472..2881885	+	137	148823741	-	TBFG_12566	-	hypothetical protein
2551	 65.12	0	2881924..2882181	+	85	148823742	-	TBFG_12567	-	hypothetical protein
2552	 65.08	0	2882178..2882555	+	125	148823743	-	TBFG_12568	-	hypothetical protein
2553	 63.20	0	2882571..2882945	-	124	148823744	-	TBFG_12569	-	hypothetical protein
2554	 62.37	0	2883045..2883440	-	131	148823745	-	TBFG_12570	-	hypothetical protein
2555	 60.98	-1	2883437..2883682	-	81	148823746	-	TBFG_12571	-	hypothetical protein
2556	 73.33	+2	2884093..2884512	-	139	148823747	-	TBFG_12572	-	hypothetical protein
2557	 70.86	+1	2884524..2885333	-	269	148823748	aroE	TBFG_12573	-	shikimate 5-dehydrogenase
2558	 65.07	0	2885330..2886583	-	417	148823749	-	TBFG_12574	-	hypothetical protein
2559	 70.96	+1	2886576..2887088	-	170	148823750	-	TBFG_12575	-	Holliday junction resolvase-like protein
2560	 65.71	0	2887089..2889803	-	904	148823751	alaS	TBFG_12576	-	alanyl-tRNA synthetase
2561	 66.41	0	2889894..2890283	-	129	148823752	-	TBFG_12577	-	hypothetical protein
2562	 65.04	0	2890390..2891064	+	224	148823753	-	TBFG_12578	-	hypothetical protein
2563	 67.23	0	2891149..2891859	+	236	148823754	-	TBFG_12579	-	hypothetical protein
2564	 69.17	+1	2891889..2893247	-	452	148823755	-	TBFG_12580	-	recombination factor protein RarA
2565	 66.26	0	2893393..2894370	+	325	148823756	-	TBFG_12581	-	hypothetical protein
2566	 60.03	-1	2894727..2895464	+	245	148823757	-	TBFG_12582	-	hypothetical protein
2567	 64.67	0	2895607..2896656	+	349	148823758	-	TBFG_12583	-	glutamine ABC transporter membrane protein
2568	 65.76	0	2896659..2897651	+	330	148823759	-	TBFG_12584	-	glutamine-transport ATP-binding protein ABC transporter glnQ
2569	 64.61	0	2897928..2899679	+	583	148823760	-	TBFG_12585	-	hypothetical protein
2570	 69.24	+1	2899690..2903112	+	1140	148823761	-	TBFG_12586	-	hypothetical protein
2571	 66.18	0	2903112..2905766	+	884	148823762	-	TBFG_12587	-	hypothetical protein
2572	 63.06	0	2905763..2906788	-	341	148823763	-	TBFG_12588	-	hypothetical protein
2573	 65.19	0	2906781..2907725	-	314	148823764	-	TBFG_12589	-	hypothetical protein
2574	 67.18	0	2907829..2908218	+	129	148823765	-	TBFG_12590	-	hypothetical protein
2575	 66.85	0	2908210..2909277	-	355	148823766	-	TBFG_12591	-	hypothetical protein
2576	 67.50	0	2909330..2911120	-	596	148823767	aspS	TBFG_12592	-	aspartyl-tRNA synthetase
2577	 70.41	+1	2911273..2912100	+	275	148823768	-	TBFG_12593	-	2-dehydropantoate 2-reductase
2578	 65.48	0	2912123..2912626	+	167	148823769	-	TBFG_12594	-	hypothetical protein
2579	 65.76	0	2912656..2913537	+	293	148823770	-	TBFG_12595	-	glycine rich membrane protein
2580	 64.52	0	2913543..2914007	-	154	148823771	-	TBFG_12596	-	hypothetical protein
2581	 64.47	0	2914235..2915824	+	529	148823772	-	TBFG_12597	-	hypothetical protein
2582	 67.84	0	2915826..2916848	-	340	148823773	-	TBFG_12598	-	hypothetical protein
2583	 63.57	0	2916956..2917858	+	300	148823774	-	TBFG_12599	-	haloalkane dehalogenase
2584	 67.30	0	2918138..2919409	-	423	148823775	hisS	TBFG_12600	-	histidyl-tRNA synthetase
2585	 65.18	0	2919406..2920146	-	246	148823777	-	TBFG_12601	-	glyoxalase II (hydroxyacylglutathione hydrolase)
2586	 63.97	0	2920131..2921057	+	308	148823776	-	TBFG_12602	-	peptidyl-prolyl-cis-trans-isomerase B ppiB
2587	 65.19	0	2921143..2923515	-	790	148823778	-	TBFG_12603	-	GTP pyrophosphokinase relA
2588	 68.90	+1	2923546..2924217	-	223	148823779	-	TBFG_12604	-	adenine phosphoribosyltransferase
2589	 66.61	0	2924321..2925994	-	557	148823780	-	TBFG_12605	-	lipoprotein
2590	 65.84	0	2926000..2927328	-	442	148823781	secF	TBFG_12606	-	preprotein translocase subunit SecF
2591	 66.20	0	2927332..2929053	-	573	148823782	secD	TBFG_12607	-	preprotein translocase subunit SecD
2592	 60.92	-1	2929163..2929510	-	115	148823783	yajC	TBFG_12608	-	preprotein translocase subunit YajC
2593	 66.96	0	2929677..2931026	+	449	148823784	-	TBFG_12609	-	4-aminobutyrate aminotransferase
2594	 66.18	0	2931188..2934694	+	1168	148823785	-	TBFG_12610	-	fatty-acid-CoA ligase fadD9
2595	 73.04	+2	2934868..2936499	+	543	148823786	-	TBFG_12611	-	PE-PGRS family protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.