IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2311	 66.26	0	2584601..2584843	+	80	148823502	-	TBFG_12325	-	hypothetical protein
2312	 62.34	0	2584884..2585807	-	307	148823503	-	TBFG_12326	-	antibiotic-resistance protein
2313	 67.44	0	2586597..2587886	+	429	148823504	-	TBFG_12327	-	hypothetical protein
2314	 68.90	+1	2587982..2588608	-	208	148823505	-	TBFG_12328	-	hypothetical protein
2315	 67.61	0	2588639..2589484	-	281	148823506	-	TBFG_12329	-	hypothetical protein
2316	 56.77	-2	2590016..2590207	-	63	148823507	-	TBFG_12330	-	hypothetical protein
2317	 54.86	-2	2590292..2590723	-	143	148823508	-	TBFG_12331	-	hypothetical protein
2318	 62.76	0	2591207..2591923	+	238	148823509	-	TBFG_12332	-	hypothetical protein
2319	 63.82	0	2592631..2593086	-	151	148823510	-	TBFG_12333	-	integrase
2320	 70.14	+1	2594223..2594567	+	114	148823511	-	TBFG_12334	-	excisionase
2321	 66.86	0	2594672..2595196	+	174	148823512	-	TBFG_12335	-	hypothetical protein
2322	 64.68	0	2595840..2596694	-	284	148823513	-	TBFG_12336	-	hypothetical protein
2323	 66.89	0	2596705..2598078	-	457	148823514	-	TBFG_12337	-	hypothetical protein
2324	 65.09	0	2598075..2599592	-	505	148823515	-	TBFG_12338	-	hypothetical protein
2325	 65.86	0	2599626..2600498	+	290	148823516	-	TBFG_12339	-	sugar-transport integral membrane protein ABC transporter uspA
2326	 62.06	-1	2600485..2601309	+	274	148823517	-	TBFG_12340	-	sugar-transport integral membrane protein ABC transporter uspB
2327	 65.00	0	2601306..2602628	+	440	148823518	-	TBFG_12341	-	periplasmic sugar-binding lipoprotein uspC
2328	 66.67	0	2602636..2603514	-	292	148823519	-	TBFG_12342	-	hypothetical protein
2329	 64.48	0	2603511..2604926	-	471	148823520	-	TBFG_12343	-	cationic amino acid transport integral membrane protein rocE
2330	 64.67	0	2604942..2605493	-	183	148823521	-	TBFG_12344	-	ornithine aminotransferase (C-terminus part) rocD2
2331	 64.78	0	2605487..2606176	-	229	148823522	-	TBFG_12345	-	ornithine aminotransferase (N-terminus part) rocD1
2332	 62.82	0	2606149..2607057	-	302	148823523	-	TBFG_12346	-	hypothetical protein
2333	 65.55	0	2607122..2607568	+	148	148823524	-	TBFG_12347	-	AsnC family transcriptional regulator
2334	 66.55	0	2607797..2608645	-	282	148823525	-	TBFG_12348	-	hypothetical protein
2335	 68.10	0	2608642..2610735	-	697	148823526	-	TBFG_12349	-	ABC transporter ATP-binding protein
2336	 71.34	+1	2610776..2611267	+	163	148823527	-	TBFG_12350	-	hypothetical protein
2337	 64.49	0	2611519..2612667	+	382	148823528	-	TBFG_12351	-	PE family protein
2338	 61.69	-1	2612702..2614249	-	515	148823529	-	TBFG_12352	-	nitrite extrusion protein 1 narK1 (nitrite facilitator 1)
2339	 62.20	0	2614483..2615019	-	178	148823530	-	TBFG_12353	-	lipoprotein lppP
2340	 63.31	0	2615094..2615480	+	128	148823531	-	TBFG_12354	-	hypothetical protein
2341	 62.83	0	2615537..2615875	+	112	148823532	-	TBFG_12355	-	hypothetical protein
2342	 63.45	0	2615905..2617551	+	548	148823533	-	TBFG_12356	-	malate dehydrogenase
2343	 65.24	0	2617505..2619118	-	537	148823534	-	TBFG_12357	-	integral membrane transport protein
2344	 65.38	0	2619593..2620525	+	310	148823535	-	TBFG_12358	-	cysteine synthase A cysK1
2345	 69.28	+1	2620529..2621218	+	229	148823536	-	TBFG_12359	-	serine acetyltransferase cysE
2346	 56.24	-2	2621634..2622602	+	322	148823537	-	TBFG_12360	-	hypothetical protein
2347	 63.99	0	2622666..2623784	-	372	148823538	-	TBFG_12361	-	hypothetical protein
2348	 55.28	-2	2623904..2624860	-	318	148823539	-	TBFG_12362	-	hypothetical protein
2349	 58.32	-2	2625490..2628378	+	962	148823540	-	TBFG_12363	-	transmembrane transport protein mmpL9
2350	 70.85	+1	2628464..2629705	-	413	148823541	-	TBFG_12364	-	PE-PGRS family protein
2351	 64.60	0	2630379..2630813	+	144	148823542	-	TBFG_12365	-	lipoprotein lppQ
2352	 65.31	0	2631033..2631326	+	97	148823543	-	TBFG_12366	-	hypothetical protein
2353	 66.88	0	2631330..2633249	-	639	148823544	dnaG	TBFG_12367	-	DNA primase
2354	 66.98	0	2633254..2634549	-	431	148823545	-	TBFG_12368	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2355	 67.83	0	2634618..2636600	+	660	148823546	-	TBFG_12369	-	transmembrane protein
2356	 63.16	0	2636685..2636969	-	94	148823547	-	TBFG_12370	-	Esat-6 like protein esxO (Esat-6 like protein 6)
2357	 62.96	0	2637020..2637316	-	98	148823548	-	TBFG_12371	-	Esat-6 like protein esxP (Esat-6 like protein 7)
2358	 68.32	0	2637451..2637753	-	100	148823549	-	TBFG_12372	-	hypothetical protein
2359	 61.90	-1	2637969..2639519	-	516	148823550	-	TBFG_12373	-	phospholipase C 3 plcC
2360	 62.84	0	2639578..2641143	-	521	148823551	-	TBFG_12374	-	membrane-associated phospholipase C 2 plcB
2361	 62.96	0	2641334..2642896	-	520	148823552	-	TBFG_12375	-	membrane-associated phospholipase C 1 plcA
2362	 69.39	+1	2643720..2644895	-	391	148823553	-	TBFG_12376	-	PPE family protein
2363	 65.75	0	2645028..2645354	+	108	148823554	-	TBFG_12377	-	transposase
2364	 63.84	0	2645405..2646289	+	294	148823555	-	TBFG_12378	-	transposase
2365	 61.45	-1	2647019..2648860	-	613	148823556	-	TBFG_12379	-	PPE family protein
2366	 65.75	0	2648896..2649222	+	108	148823557	-	TBFG_12380	-	transposase
2367	 63.84	0	2649273..2650157	+	294	148823558	-	TBFG_12381	-	transposase
2368	 61.63	-1	2650983..2652830	-	615	148823559	-	TBFG_12382	-	PPE family protein
2369	 61.21	-1	2652968..2654359	-	463	148823560	-	TBFG_12383	-	glycyl-tRNA synthetase
2370	 66.18	0	2654541..2654948	+	135	148823561	-	TBFG_12384	-	ArsR family transcriptional regulator
2371	 62.60	0	2654945..2655337	+	130	148823562	-	TBFG_12385	-	ferric uptake regulation protein furB
2372	 64.34	0	2655445..2655873	-	142	148823563	-	TBFG_12386	-	hypothetical protein
2373	 64.42	0	2655873..2656763	-	296	148823564	-	TBFG_12387	-	long-chain (C50) Z-isoprenyl diphosphate synthase
2374	 68.80	0	2656756..2657553	-	265	148823565	recO	TBFG_12388	-	DNA repair protein RecO
2375	 67.97	0	2657615..2659069	+	484	148823566	-	TBFG_12389	-	amidase
2376	 63.23	0	2659066..2659968	-	300	148823567	era	TBFG_12390	-	GTP-binding protein Era
2377	 71.68	+1	2660042..2660380	-	112	148823568	-	TBFG_12391	-	hypothetical protein
2378	 64.98	0	2660355..2661662	-	435	148823569	-	TBFG_12392	-	transmembrane protein
2379	 62.30	0	2661659..2662207	-	182	148823570	-	TBFG_12393	-	putative metalloprotease
2380	 64.78	0	2662211..2663269	-	352	148823571	-	TBFG_12394	-	phoH-like protein phoH1 (phosphate starvation-inducible protein psiH)
2381	 66.21	0	2663540..2664853	-	437	148823572	-	TBFG_12395	-	hypothetical protein
2382	 69.44	+1	2664946..2665233	+	95	148823573	-	TBFG_12396	-	PE-PGRS family protein
2383	 69.46	+1	2665332..2666120	-	262	148823574	-	TBFG_12397	-	hypothetical protein
2384	 67.97	0	2666134..2667282	-	382	148823575	-	TBFG_12398	-	chaperone protein dnaJ2
2385	 63.95	0	2667357..2668388	-	343	148823576	hrcA	TBFG_12399	-	heat-inducible transcription repressor
2386	 63.52	0	2668560..2668877	+	105	148823577	-	TBFG_12400	-	hypothetical protein
2387	 67.06	0	2668904..2669410	-	168	148823578	-	TBFG_12401	-	low molecular weight antigen cfp2
2388	 63.89	0	2669510..2669725	-	71	148823579	-	TBFG_12402	-	hypotehtical mycobactin/exochelin synthesis protein mbtH
2389	 66.51	0	2669703..2670998	-	431	148823580	-	TBFG_12403	-	lysine-N-oxygenase mbtG
2390	 67.72	0	2670995..2675380	-	1461	148823581	-	TBFG_12404	-	peptide synthetase mbtF
2391	 66.47	0	2675362..2680557	-	1731	148823582	-	TBFG_12405	-	peptide synthetase mbtE
2392	 66.93	0	2680550..2683564	-	1004	148823583	-	TBFG_12406	-	polyketide synthetase mbtD
2393	 67.27	0	2683564..2684898	-	444	148823584	-	TBFG_12407	-	polyketide synthetase mbtC
2394	 68.86	0	2684888..2689132	-	1414	148823585	-	TBFG_12408	-	phenyloxazoline synthase mbtB
2395	 69.20	+1	2689231..2690928	+	565	148823586	-	TBFG_12409	-	bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase
2396	 66.23	0	2691024..2691944	+	306	148823587	-	TBFG_12410	-	acetyl hydrolase mbtJ
2397	 64.15	0	2691948..2693300	-	450	148823588	-	TBFG_12411	-	salicylate synthase MbtI
2398	 61.72	-1	2694060..2695313	+	417	148823589	-	TBFG_12412	-	hypothetical protein
2399	 68.97	+1	2695310..2696482	-	390	148823590	-	TBFG_12413	-	coproporphyrinogen III oxidase
2400	 60.86	-1	2696543..2697007	-	154	148823591	-	TBFG_12414	-	resuscitation-promoting factor rpfD
2401	 63.84	0	2697370..2698254	-	294	148823592	-	TBFG_12416	-	transposase
2402	 65.75	0	2698305..2698631	-	108	148823593	-	TBFG_12417	-	transposase
2403	 64.01	0	2699332..2701023	+	563	148823594	-	TBFG_12419	-	ferredoxin-dependent nitrite reductase nirA
2404	 64.18	0	2701020..2701784	+	254	148823595	-	TBFG_12420	-	phosphoadenosine phosphosulfate reductase
2405	 69.39	+1	2701781..2702626	+	281	148823596	-	TBFG_12421	-	hypothetical protein
2406	 67.13	0	2702663..2704594	+	643	148823597	-	TBFG_12422	-	gamma-glutamyltranspeptidase precursor ggtB
2407	 63.92	0	2704725..2706728	+	667	148823598	-	TBFG_12423	-	integral membrane protein
2408	 73.98	+2	2707389..2708537	+	382	148823599	-	TBFG_12424	-	PE-PGRS family protein
2409	 66.67	0	2708562..2709617	-	351	148823600	-	TBFG_12425	-	sulfate-transport ATP-binding protein ABC transporter cysA1
2410	 62.52	0	2709634..2710452	-	272	148823601	-	TBFG_12426	-	sulfate-transport integral membrane protein ABC transporter cysW
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.