IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
170	 62.42	0	198850..200214	+	454	148821361	-	TBFG_10170	-	MCE-family protein mce1A
171	 59.94	-1	200211..201251	+	346	148821362	-	TBFG_10171	-	MCE-family protein mce1B
172	 66.60	0	201248..202795	+	515	148821363	-	TBFG_10172	-	MCE-family protein mce1C
173	 62.02	-1	202792..204384	+	530	148821364	-	TBFG_10173	-	MCE-family protein mce1D
174	 63.17	0	204381..205553	+	390	148821365	-	TBFG_10174	-	MCE family lipoprotein LprK
175	 62.14	0	205547..207094	+	515	148821366	-	TBFG_10175	-	MCE-family protein mce1F
176	 64.64	0	207130..207771	+	213	148821367	-	TBFG_10176	-	MCE associated membrane protein
177	 65.22	0	207768..208736	+	322	148821368	-	TBFG_10177	-	MCE associated membrane protein
178	 59.82	-1	208733..209287	+	184	148821369	-	TBFG_10178	-	MCE associated protein
179	 63.81	0	209254..209988	+	244	148821370	-	TBFG_10179	-	MCE associated membrane protein
180	 64.23	0	210019..211128	-	369	148821371	-	TBFG_10180	-	lipoprotein lprO
181	 63.94	0	211208..212566	-	452	148821372	-	TBFG_10181	-	transmembrane protein
182	 62.99	0	212593..213327	-	244	148821373	-	TBFG_10182	-	hypothetical protein
183	 65.77	0	213344..214456	-	370	148821375	-	TBFG_10183	-	RNA polymerase factor sigma-70
184	 66.55	0	214404..215243	+	279	148821374	-	TBFG_10184	-	lysophospholipase
185	 69.60	+1	215285..216034	+	249	148821376	-	TBFG_10185	-	hypothetical protein
186	 66.86	0	216031..216540	+	169	148821377	-	TBFG_10186	-	hypothetical protein
187	 65.90	0	216585..218660	+	691	148821378	-	TBFG_10187	-	beta-glucosidase bglS
188	 67.12	0	219027..219683	+	218	148821379	-	TBFG_10188	-	O-methyltransferase
189	 62.27	0	219802..220233	+	143	148821380	-	TBFG_10189	-	transmembrane protein
190	 65.74	0	220312..222039	-	575	148821381	-	TBFG_10190	-	dihydroxy-acid dehydratase
191	 64.26	0	222187..222477	+	96	148821382	-	TBFG_10191	-	hypothetical protein
192	 67.87	0	222605..223846	+	413	148821383	-	TBFG_10192	-	integral membrane protein
193	 74.26	+2	223923..224225	+	100	148821384	-	TBFG_10193	-	hypothetical protein
194	 62.61	0	224315..224980	+	221	148821385	-	TBFG_10194	-	hypothetical protein
195	 61.63	-1	225040..226887	-	615	148821386	-	TBFG_10195	-	hypothetical protein
196	 66.83	0	227194..230778	+	1194	148821387	-	TBFG_10196	-	drug ABC transporter ATP-binding protein
197	 63.23	0	231152..231850	+	232	148821388	-	TBFG_10197	-	LuxR family two component transcriptional regulator
198	 67.86	0	231963..232547	+	194	148821389	-	TBFG_10198	-	transcriptional regulator
199	 66.40	0	232544..234793	+	749	148821390	-	TBFG_10199	-	oxidoreductase
200	 63.65	0	234834..236825	-	663	148821391	-	TBFG_10200	-	zinc metalloprotease
201	 64.24	0	236868..237527	+	219	148821392	-	TBFG_10201	-	hypothetical protein
202	 67.10	0	237524..238213	+	229	148821393	-	TBFG_10202	-	transmembrane protein
203	 67.27	0	238210..238707	-	165	148821394	-	TBFG_10203	-	hypothetical protein
204	 65.91	0	238710..241610	-	966	148821395	-	TBFG_10204	-	transmembrane transport protein mmpL11
205	 67.15	0	241832..242242	+	136	148821396	-	TBFG_10205	-	hypothetical protein
206	 66.90	0	242294..243577	-	427	148821397	-	TBFG_10206	-	transmembrane protein
207	 65.04	0	243702..244805	+	367	148821398	-	TBFG_10207	-	transmembrane protein
208	 65.26	0	244802..247636	-	944	148821399	-	TBFG_10208	-	transmembrane transport protein mmpL3
209	 64.61	0	247702..248430	-	242	148821400	-	TBFG_10209	-	hypothetical protein
210	 64.77	0	248433..249224	-	263	148821401	trmB	TBFG_10210	-	tRNA (guanine-N(7))-methyltransferase
211	 70.17	+1	249356..250441	+	361	148821402	-	TBFG_10211	-	hypothetical protein
212	 69.44	+1	250438..251916	+	492	148821403	-	TBFG_10212	-	hypothetical protein
213	 64.09	0	252100..253920	+	606	148821404	-	TBFG_10213	-	phosphoenolpyruvate carboxykinase
214	 65.64	0	253987..254958	-	323	148821405	-	TBFG_10214	-	AsnC family transcriptional regulator
215	 61.87	-1	254955..256268	-	437	148821406	-	TBFG_10215	-	methyltransferase
216	 63.38	0	256382..257995	+	537	148821407	-	TBFG_10216	-	acyl-CoA synthetase
217	 64.80	0	258101..259222	-	373	148821408	-	TBFG_10217	-	acyl-CoA dehydrogenase fadE3
218	 66.07	0	259231..260244	+	337	148821409	-	TBFG_10218	-	hypothetical protein
219	 67.22	0	260241..261149	-	302	148821410	-	TBFG_10219	-	esterase lipW
220	 67.19	0	261242..262570	+	442	148821411	-	TBFG_10220	-	transmembrane protein
221	 66.48	0	262572..263120	+	182	148821412	-	TBFG_10221	-	transmembrane protein
222	 65.68	0	263130..264341	+	403	148821413	-	TBFG_10222	-	esterase lipC
223	 62.70	0	264385..265794	+	469	148821414	-	TBFG_10223	-	hypothetical protein
224	 65.27	0	265825..266613	+	262	148821415	-	TBFG_10224	-	enoyl-CoA hydratase
225	 64.07	0	266619..268082	-	487	148821416	-	TBFG_10225	-	aldehyde dehydrogenase
226	 66.93	0	268181..268945	-	254	148821417	-	TBFG_10226	-	methyltransferase
227	 66.32	0	268981..270135	+	384	148821418	-	TBFG_10227	-	hypothetical protein
228	 69.50	+1	270152..271882	-	576	148821419	-	TBFG_10228	-	transmembrane protein
229	 65.32	0	271892..273157	-	421	148821420	-	TBFG_10229	-	hypothetical protein
230	 69.20	+1	273373..274596	+	407	148821421	-	TBFG_10230	-	integral membrane acyltransferase
231	 61.97	-1	274624..275304	-	226	148821422	-	TBFG_10231	-	hypothetical protein
232	 65.85	0	275301..276281	-	326	148821423	-	TBFG_10232	-	phosphotriesterase PHP (parathion hydrolase)
233	 63.56	0	276376..278082	+	568	148821424	-	TBFG_10233	-	acyl-CoA dehydrogenase fadE4
234	 67.10	0	278217..278906	+	229	148821425	-	TBFG_10234	-	TetR/AcrR family transcriptional regulator
235	 64.87	0	278903..279847	+	314	148821426	-	TBFG_10235	-	ribonucleotide-diphosphate reductase subunit beta
236	 66.80	0	279923..281458	-	511	148821427	gabD1	TBFG_10236	-	succinic semialdehyde dehydrogenase
237	 62.73	0	281484..282932	-	482	148821428	-	TBFG_10237	-	transmembrane protein
238	 71.50	+1	282967..287169	-	1400	148821429	-	TBFG_10238	-	transmembrane protein
239	 64.94	0	287216..287389	-	57	148821430	-	TBFG_10239	-	small secreted protein
240	 68.72	0	287504..288670	+	388	148821431	-	TBFG_10240	-	lipoprotein lpqI
241	 63.74	0	288746..289360	+	204	148821432	-	TBFG_10241	-	TetR family transcriptional regulator
242	 65.38	0	289422..289655	+	77	148821433	-	TBFG_10242	-	hypothetical protein
243	 62.79	0	289663..290100	+	145	148821434	-	TBFG_10243	-	hypothetical protein
244	 66.31	0	290130..290972	-	280	148821435	-	TBFG_10244	-	hypothetical protein
245	 67.99	0	290983..292347	-	454	148821436	fabG	TBFG_10245	-	3-ketoacyl-(acyl-carrier-protein) reductase
246	 67.88	0	292489..293811	+	440	148821437	-	TBFG_10246	-	acetyl-CoA acetyltransferase
247	 64.27	0	294115..295950	-	611	148821438	-	TBFG_10247	-	acyl-CoA dehydrogenase fadE5
248	 64.21	0	296322..296810	+	162	148821439	-	TBFG_10248	-	oxidoreductase
249	 60.34	-1	297126..298436	+	436	148821440	-	TBFG_10249	-	integral membrane protein
250	 58.63	-2	298433..299179	-	248	148821441	-	TBFG_10250	-	fumarate reductase iron-sulfur subunit
251	 63.83	0	299180..301120	-	646	148821442	sdhA	TBFG_10251	-	succinate dehydrogenase flavoprotein subunit
252	 58.39	-2	301151..301972	-	273	148821443	-	TBFG_10252	-	succinate dehydrogenase membrane anchor subunit
253	 61.90	-1	302052..302345	-	97	148821444	-	TBFG_10253	-	hypothetical protein
254	 66.67	0	302490..302969	-	159	148821445	-	TBFG_10254	-	heat shock protein hsp (heat-stress-induced ribosome-binding protein A)
255	 65.61	0	303183..305744	+	853	148821446	-	TBFG_10255	-	nitrite reductase NAD(P)H] large subunit
256	 64.71	0	305770..306126	+	118	148821447	-	TBFG_10256	-	nitrite reductase [NAD(P)H] small subunit nirD
257	 67.24	0	306142..306666	-	174	148821448	-	TBFG_10257	-	bifunctional cobalamin biosynthesis protein cobU: cobinamide kinase + cobinamide phosphate guanylyltransferase
258	 69.49	+1	306691..308175	-	494	148821449	-	TBFG_10258	-	cobyric acid synthase
259	 67.09	0	308194..309864	-	556	148821450	-	TBFG_10259	-	PPE family protein
260	 62.13	0	310016..310390	+	124	148821451	-	TBFG_10260	-	hypothetical protein
261	 68.17	0	310254..310586	-	110	148821452	-	TBFG_10261	-	hypothetical protein
262	 62.94	0	310611..311066	-	151	148821453	-	TBFG_10262	-	hypothetical protein
263	 65.99	0	311091..311834	-	247	148821454	-	TBFG_10263	-	hypothetical protein
264	 64.75	0	311831..312976	-	381	148821455	-	TBFG_10264	-	bifunctional uroporphyrinogen-III synthetase/response regulator domain-containing protein
265	 63.97	0	313076..314485	-	469	148821456	-	TBFG_10265	-	integral membrane nitrite extrusion protein narK3 (nitrite facilitator)
266	 68.13	0	314626..315171	-	181	148821457	-	TBFG_10266	-	aminoglycoside 2-N-acetyltransferase aac
267	 68.33	0	315181..316083	-	300	148821458	-	TBFG_10267	-	hypothetical protein
268	 68.20	0	316100..316753	-	217	148821459	-	TBFG_10268	-	hypothetical protein
269	 66.26	0	316828..317820	-	330	148821460	-	TBFG_10269	-	periplasmic iron-transport lipoprotein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.