IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2046	 61.88	-1	2276731..2277336	-	201	148823237	-	TBFG_12057	-	hypothetical protein
2047	 70.00	+1	2277361..2277720	-	119	148823238	-	TBFG_12058	-	hypothetical protein
2048	 48.23	-2	2277880..2278557	-	225	148823239	-	TBFG_12059	-	hypothetical protein
2049	 59.09	-1	2278952..2279848	-	298	148823240	-	TBFG_12060	-	hypothetical protein
2050	 66.17	0	2285362..2286360	-	332	148823241	-	TBFG_12062	-	hypothetical protein
2051	 63.05	0	2286475..2287359	-	294	148823242	-	TBFG_12063	-	hypothetical protein
2052	 65.39	0	2287399..2289120	-	573	148823243	-	TBFG_12064	-	histidine kinase response regulator
2053	 67.86	0	2289181..2290020	-	279	148823244	-	TBFG_12065	-	hypothetical protein
2054	 64.80	0	2290017..2291036	-	339	148823245	-	TBFG_12066	-	phosphofructokinase pfkB
2055	 66.86	0	2291053..2293098	-	681	148823246	-	TBFG_12067	-	hypothetical protein
2056	 61.61	-1	2293110..2293544	-	144	148823247	-	TBFG_12068	-	heat shock protein hspX
2057	 63.76	0	2293741..2294736	+	331	148823248	-	TBFG_12069	-	hypothetical protein
2058	 69.99	+1	2294852..2295694	-	280	148823249	-	TBFG_12070	-	hypothetical protein
2059	 66.03	0	2295759..2296229	+	156	148823250	-	TBFG_12071	-	ArsR-type repressor protein
2060	 62.99	0	2296226..2296714	+	162	148823251	-	TBFG_12072	-	hypothetical protein
2061	 64.33	0	2296711..2297352	+	213	148823252	-	TBFG_12073	-	hypothetical protein
2062	 64.82	0	2297359..2298333	-	324	148823253	-	TBFG_12074	-	transmembrane protein
2063	 62.85	0	2298335..2299408	-	357	148823254	-	TBFG_12075	-	sugar ABC transporter ATP-binding protein
2064	 62.04	-1	2299411..2300253	-	280	148823255	-	TBFG_12076	-	sugar ABC transporter membrane protein
2065	 59.36	-1	2300240..2301142	-	300	148823256	-	TBFG_12077	-	sugar ABC transporter membrane protein
2066	 63.64	0	2301139..2302458	-	439	148823257	-	TBFG_12078	-	sugar-binding lipoprotein
2067	 65.79	0	2302496..2303293	-	265	148823258	-	TBFG_12079	-	hypothetical protein
2068	 64.71	0	2303293..2303853	-	186	148823259	-	TBFG_12080	-	pyrazinamidase/nicotinamidase pncA
2069	 62.39	0	2303894..2304244	-	116	148823260	-	TBFG_12081	-	hypothetical protein
2070	 65.49	0	2304297..2305832	-	511	148823261	-	TBFG_12082	-	carboxylesterase lipT
2071	 70.32	+1	2305881..2306537	+	218	148823262	-	TBFG_12083	-	lipoprotein lppI
2072	 67.37	0	2306574..2309138	-	854	148823263	-	TBFG_12084	-	hypothetical protein
2073	 67.50	0	2309143..2321598	-	4151	148823264	-	TBFG_12085	-	hypothetical protein
2074	 70.80	+1	2321905..2322267	-	120	148823265	-	TBFG_12086	-	hypothetical protein
2075	 65.18	0	2322433..2322768	+	111	148823266	-	TBFG_12087	-	hypothetical protein
2076	 67.01	0	2322743..2325367	-	874	148823267	-	TBFG_12088	-	polyprenol-monophosphomannose synthase ppm1
2077	 71.21	+1	2325525..2327129	-	534	148823268	-	TBFG_12089	-	hypothetical protein
2078	 67.23	0	2327134..2327661	-	175	148823269	fxsA	TBFG_12090	-	FxsA
2079	 65.27	0	2327737..2328450	+	237	148823270	-	TBFG_12091	-	hypothetical protein
2080	 63.30	0	2328699..2328965	-	88	148823271	-	TBFG_12092	-	30S ribosomal protein S18
2081	 69.28	+1	2328966..2329271	-	101	148823272	rpsN	TBFG_12093	-	30S ribosomal protein S14
2082	 63.03	0	2329273..2329437	-	54	148823273	rpmG	TBFG_12094	-	50S ribosomal protein L33
2083	 64.14	0	2329437..2329673	-	78	148823274	rpmB	TBFG_12095	-	50S ribosomal protein L28
2084	 67.32	0	2329786..2331321	+	511	148823275	-	TBFG_12096	-	hypothetical protein
2085	 64.69	0	2331293..2331697	-	134	148823276	-	TBFG_12097	-	hypothetical protein
2086	 69.18	+1	2331781..2335365	-	1194	148823277	cobN	TBFG_12098	-	cobaltochelatase
2087	 67.09	0	2335443..2335676	+	77	148823278	-	TBFG_12099	-	hypothetical protein
2088	 72.89	+2	2336063..2337154	+	363	148823279	-	TBFG_12100	-	cobalamin biosynthesis protein cobG
2089	 72.25	+1	2337164..2337790	+	208	148823280	cobH	TBFG_12101	-	precorrin-8X methylmutase
2090	 70.73	+1	2337787..2339313	+	508	148823281	-	TBFG_12102	-	bifunctional protein, cobI-cobJ fusion protein: S-adenosyl-L-methionine-precorrin-2 methyl transferase + precorrin-3 methylase
2091	 59.48	-1	2339259..2340482	-	407	148823282	-	TBFG_12103	-	hypothetical protein
2092	 66.02	0	2340498..2341421	-	307	148823284	-	TBFG_12104	-	class A beta-lactamase blaC
2093	 67.41	0	2341178..2342113	+	311	148823283	-	TBFG_12105	-	RNA polymerase sigma factor SigC
2094	 66.67	0	2342103..2342837	-	244	148823285	-	TBFG_12106	-	cobalt-precorrin-6x reductase
2095	 67.33	0	2342834..2343589	-	251	148823286	-	TBFG_12107	-	precorrin-4 C11-methyltransferase cobM
2096	 68.29	0	2343586..2344758	-	390	148823287	-	TBFG_12108	-	precorrin-6y methyltransferase cobL
2097	 70.93	+1	2344826..2345575	-	249	148823288	-	TBFG_12109	-	short-chain type dehydrogenase
2098	 66.91	0	2345605..2346018	+	137	148823289	-	TBFG_12110	-	hypothetical protein
2099	 68.31	0	2346028..2347491	-	487	148823290	-	TBFG_12111	-	hypothetical protein
2100	 64.92	0	2347935..2348906	-	323	148823291	-	TBFG_12112	-	transmembrane protein
2101	 65.75	0	2349340..2349666	+	108	148823292	-	TBFG_12113	-	transposase
2102	 63.84	0	2349717..2350601	+	294	148823293	-	TBFG_12114	-	hypothetical protein
2103	 62.16	0	2350822..2351265	-	147	148823294	-	TBFG_12115	-	hypothetical protein
2104	 64.38	0	2351325..2353295	+	656	148823295	-	TBFG_12116	-	hypothetical protein
2105	 61.35	-1	2353276..2353839	+	187	148823296	-	TBFG_12117	-	lipoprotein lppJ
2106	 65.56	0	2354035..2354484	-	149	148823297	-	TBFG_12118	-	hypothetical protein
2107	 67.17	0	2354680..2356845	+	721	148823298	-	TBFG_12119	-	hypothetical protein
2108	 70.79	+1	2356842..2357786	+	314	148823299	-	TBFG_12120	-	hypothetical protein
2109	 65.70	0	2357779..2358915	+	378	148823300	-	TBFG_12121	-	hypothetical protein
2110	 66.01	0	2359282..2359887	+	201	148823301	-	TBFG_12122	-	hypothetical protein
2111	 64.97	0	2360382..2362151	+	589	148823302	-	TBFG_12123	-	transmembrane serine/threonine-protein kinase J pknJ
2112	 66.31	0	2362168..2363295	-	375	148823303	-	TBFG_12124	-	dipeptidase pepE
2113	 69.37	+1	2363344..2364525	+	393	148823304	-	TBFG_12125	-	5'-3' exonuclease
2114	 66.26	0	2364529..2365263	-	244	148823305	-	TBFG_12126	-	hypothetical protein
2115	 67.07	0	2365305..2368025	-	906	148823306	-	TBFG_12127	-	ATP-dependent DNA helicase helY
2116	 63.11	0	2368142..2369068	-	308	148823307	-	TBFG_12128	-	sec-independent protein translocase transmembrane protein tatC
2117	 62.36	0	2369085..2369432	-	115	148823308	tatA	TBFG_12129	-	twin argininte translocase protein A
2118	 68.56	0	2369404..2370354	-	316	148823309	-	TBFG_12130	-	hypothetical protein
2119	 67.27	0	2370351..2371349	-	332	148823310	-	TBFG_12131	-	hypothetical protein
2120	 63.65	0	2371358..2372716	-	452	148823311	-	TBFG_12132	-	hypothetical protein
2121	 77.52	+2	2372768..2373937	-	389	148823312	-	TBFG_12133	-	PE-PGRS family protein
2122	 68.72	0	2374425..2376077	+	550	148823313	-	TBFG_12134	-	hypothetical protein
2123	 69.30	+1	2376276..2379317	+	1013	148823314	-	TBFG_12135	-	helicase helZ
2124	 68.94	+1	2379310..2380143	+	277	148823315	-	TBFG_12136	-	hypothetical protein
2125	 65.75	0	2380122..2380556	-	144	148823316	-	TBFG_12137	-	hypothetical protein
2126	 65.88	0	2380563..2380817	-	84	148823317	-	TBFG_12138	-	hypothetical protein
2127	 65.12	0	2380833..2381090	-	85	148823318	-	TBFG_12139	-	hypothetical protein
2128	 57.94	-2	2381194..2381835	+	213	148823319	-	TBFG_12140	-	PPE family protein
2129	 63.45	0	2382375..2383121	-	248	148823320	-	TBFG_12141	-	proteasome alpha subunit prcA
2130	 63.58	0	2383118..2383993	-	291	148823321	-	TBFG_12142	-	proteasome beta subunit prcB
2131	 65.13	0	2383990..2384184	-	64	148823322	-	TBFG_12143	-	hypothetical protein
2132	 68.25	0	2384297..2386132	-	611	148823323	-	TBFG_12144	-	hypothetical protein
2133	 67.00	0	2386193..2387386	+	397	148823324	-	TBFG_12145	-	hypothetical protein
2134	 63.62	0	2387397..2388020	+	207	148823325	-	TBFG_12146	-	hypothetical protein
2135	 62.08	-1	2388024..2389853	-	609	148823326	-	TBFG_12147	-	ATPase
2136	 66.67	0	2390134..2390703	+	189	148823327	-	TBFG_12148	-	lipoprotein lppK
2137	 65.99	0	2390711..2391004	+	97	148823328	-	TBFG_12149	-	hypothetical protein
2138	 67.14	0	2391033..2391875	-	280	148823329	-	TBFG_12150	-	RNA methyltransferase
2139	 66.91	0	2391949..2392785	+	278	148823330	-	TBFG_12151	-	hypothetical protein
2140	 66.87	0	2392808..2393290	-	160	148823331	-	TBFG_12152	-	integral membrane protein
2141	 65.38	0	2393369..2394223	-	284	148823332	hisG	TBFG_12153	-	ATP phosphoribosyltransferase
2142	 63.48	0	2394226..2394507	-	93	148823333	hisE	TBFG_12154	-	phosphoribosyl-ATP pyrophosphatase
2143	 66.40	0	2394634..2396124	+	496	148823334	-	TBFG_12155	-	PPE family protein
2144	 65.13	0	2396050..2399628	-	1192	148823335	-	TBFG_12156	-	5-methyltetrahydrofolate-homocystein methyltransferase metH
2145	 68.49	0	2399854..2400732	+	292	148823336	-	TBFG_12157	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.