IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2005	 66.43	0	2233667..2234086	-	139	148823196	-	TBFG_12013	-	hypothetical protein
2006	 64.82	0	2234498..2236174	+	558	148823197	-	TBFG_12014	-	PE-PGRS family protein
2007	 62.23	0	2236162..2236815	-	217	148823198	-	TBFG_12015	-	cutinase precursor cfp21
2008	 65.02	0	2237245..2238156	-	303	148823199	-	TBFG_12016	-	chromosome replication initiation inhibitor protein
2009	 66.17	0	2238265..2238864	+	199	148823200	-	TBFG_12017	-	integral membrane protein
2010	 59.91	-1	2239280..2239708	+	142	148823201	-	TBFG_12018	-	chitinase
2011	 70.19	+1	2239934..2240473	+	179	148823202	-	TBFG_12019	-	methyltransferase
2012	 62.92	0	2240993..2241553	-	186	148823203	-	TBFG_12020	-	hypothetical protein
2013	 62.28	0	2241550..2241891	-	113	148823204	-	TBFG_12021	-	transcriptional regulator
2014	 67.56	0	2242135..2242470	-	111	148823205	-	TBFG_12022	-	dehydrogenase
2015	 61.74	-1	2242559..2242903	-	114	148823206	-	TBFG_12023	-	hypothetical protein
2016	 67.23	0	2243245..2245560	-	771	148823207	-	TBFG_12024	-	metal cation transporter P-type ATPase G ctpG
2017	 72.53	+2	2245557..2245829	-	90	148823208	-	TBFG_12025	-	hypothetical protein
2018	 65.55	0	2245882..2246238	-	118	148823209	-	TBFG_12026	-	transcriptional regulator
2019	 63.02	0	2246395..2247162	+	255	148823210	-	TBFG_12027	-	hypothetical protein
2020	 65.09	0	2247258..2248211	+	317	148823211	-	TBFG_12028	-	hypothetical protein
2021	 64.97	0	2248413..2251130	+	905	148823212	-	TBFG_12029	-	metal cation transporter P-type ATPase A ctpF
2022	 63.58	0	2251199..2251975	-	258	148823213	-	TBFG_12030	-	hypothetical protein
2023	 68.71	0	2252070..2253392	-	440	148823214	-	TBFG_12031	-	integral membrane protein
2024	 62.33	0	2253463..2255076	+	537	148823215	-	TBFG_12032	-	hypothetical protein
2025	 61.22	-1	2255086..2255838	+	250	148823216	-	TBFG_12033	-	hypothetical protein
2026	 63.35	0	2255914..2256696	+	260	148823217	-	TBFG_12034	-	20-beta-hydroxysteroid dehydrogenase fabG3
2027	 67.83	0	2256817..2257674	-	285	148823218	-	TBFG_12035	-	hypothetical protein
2028	 64.73	0	2257732..2259228	-	498	148823219	-	TBFG_12036	-	hypothetical protein
2029	 64.19	0	2259250..2260137	-	295	148823220	-	TBFG_12037	-	hypothetical protein
2030	 63.78	0	2260256..2264239	+	1327	148823221	-	TBFG_12038	-	trehalose-6-phosphate phosphatase otsB1
2031	 62.90	0	2264338..2264682	-	114	148823222	-	TBFG_12039	-	ferredoxin fdxA
2032	 62.97	0	2264871..2266196	-	441	148823223	-	TBFG_12040	-	hypothetical protein
2033	 61.32	-1	2266284..2266526	+	80	148823224	-	TBFG_12041	-	hypothetical protein
2034	 64.91	0	2266527..2266925	+	132	148823225	-	TBFG_12042	-	hypothetical protein
2035	 64.81	0	2267108..2267539	-	143	148823226	-	TBFG_12043	-	hypothetical protein
2036	 62.02	-1	2267580..2268074	+	164	148823227	-	TBFG_12044	-	hypothetical protein
2037	 71.01	+1	2268778..2269398	+	206	148823228	-	TBFG_12045	-	transposase
2038	 70.39	+1	2269352..2269942	+	196	148823229	-	TBFG_12046	-	transposase
2039	 63.84	0	2270484..2271368	-	294	148823230	-	TBFG_12048	-	transposase
2040	 65.75	0	2271419..2271745	-	108	148823231	-	TBFG_12049	-	transposase
2041	 60.78	-1	2273002..2273613	+	203	148823232	-	TBFG_12051	-	hypothetical protein
2042	 63.78	0	2273610..2274650	+	346	148823233	-	TBFG_12052	-	transcriptional regulator
2043	 64.86	0	2274892..2275611	+	239	148823234	-	TBFG_12053	-	hypothetical protein
2044	 62.11	0	2275667..2276017	+	116	148823235	-	TBFG_12054	-	hypothetical protein
2045	 63.40	0	2276417..2276722	-	101	148823236	-	TBFG_12056	-	transcriptional regulator
2046	 61.88	-1	2276731..2277336	-	201	148823237	-	TBFG_12057	-	hypothetical protein
2047	 70.00	+1	2277361..2277720	-	119	148823238	-	TBFG_12058	-	hypothetical protein
2048	 48.23	-2	2277880..2278557	-	225	148823239	-	TBFG_12059	-	hypothetical protein
2049	 59.09	-1	2278952..2279848	-	298	148823240	-	TBFG_12060	-	hypothetical protein
2050	 66.17	0	2285362..2286360	-	332	148823241	-	TBFG_12062	-	hypothetical protein
2051	 63.05	0	2286475..2287359	-	294	148823242	-	TBFG_12063	-	hypothetical protein
2052	 65.39	0	2287399..2289120	-	573	148823243	-	TBFG_12064	-	histidine kinase response regulator
2053	 67.86	0	2289181..2290020	-	279	148823244	-	TBFG_12065	-	hypothetical protein
2054	 64.80	0	2290017..2291036	-	339	148823245	-	TBFG_12066	-	phosphofructokinase pfkB
2055	 66.86	0	2291053..2293098	-	681	148823246	-	TBFG_12067	-	hypothetical protein
2056	 61.61	-1	2293110..2293544	-	144	148823247	-	TBFG_12068	-	heat shock protein hspX
2057	 63.76	0	2293741..2294736	+	331	148823248	-	TBFG_12069	-	hypothetical protein
2058	 69.99	+1	2294852..2295694	-	280	148823249	-	TBFG_12070	-	hypothetical protein
2059	 66.03	0	2295759..2296229	+	156	148823250	-	TBFG_12071	-	ArsR-type repressor protein
2060	 62.99	0	2296226..2296714	+	162	148823251	-	TBFG_12072	-	hypothetical protein
2061	 64.33	0	2296711..2297352	+	213	148823252	-	TBFG_12073	-	hypothetical protein
2062	 64.82	0	2297359..2298333	-	324	148823253	-	TBFG_12074	-	transmembrane protein
2063	 62.85	0	2298335..2299408	-	357	148823254	-	TBFG_12075	-	sugar ABC transporter ATP-binding protein
2064	 62.04	-1	2299411..2300253	-	280	148823255	-	TBFG_12076	-	sugar ABC transporter membrane protein
2065	 59.36	-1	2300240..2301142	-	300	148823256	-	TBFG_12077	-	sugar ABC transporter membrane protein
2066	 63.64	0	2301139..2302458	-	439	148823257	-	TBFG_12078	-	sugar-binding lipoprotein
2067	 65.79	0	2302496..2303293	-	265	148823258	-	TBFG_12079	-	hypothetical protein
2068	 64.71	0	2303293..2303853	-	186	148823259	-	TBFG_12080	-	pyrazinamidase/nicotinamidase pncA
2069	 62.39	0	2303894..2304244	-	116	148823260	-	TBFG_12081	-	hypothetical protein
2070	 65.49	0	2304297..2305832	-	511	148823261	-	TBFG_12082	-	carboxylesterase lipT
2071	 70.32	+1	2305881..2306537	+	218	148823262	-	TBFG_12083	-	lipoprotein lppI
2072	 67.37	0	2306574..2309138	-	854	148823263	-	TBFG_12084	-	hypothetical protein
2073	 67.50	0	2309143..2321598	-	4151	148823264	-	TBFG_12085	-	hypothetical protein
2074	 70.80	+1	2321905..2322267	-	120	148823265	-	TBFG_12086	-	hypothetical protein
2075	 65.18	0	2322433..2322768	+	111	148823266	-	TBFG_12087	-	hypothetical protein
2076	 67.01	0	2322743..2325367	-	874	148823267	-	TBFG_12088	-	polyprenol-monophosphomannose synthase ppm1
2077	 71.21	+1	2325525..2327129	-	534	148823268	-	TBFG_12089	-	hypothetical protein
2078	 67.23	0	2327134..2327661	-	175	148823269	fxsA	TBFG_12090	-	FxsA
2079	 65.27	0	2327737..2328450	+	237	148823270	-	TBFG_12091	-	hypothetical protein
2080	 63.30	0	2328699..2328965	-	88	148823271	-	TBFG_12092	-	30S ribosomal protein S18
2081	 69.28	+1	2328966..2329271	-	101	148823272	rpsN	TBFG_12093	-	30S ribosomal protein S14
2082	 63.03	0	2329273..2329437	-	54	148823273	rpmG	TBFG_12094	-	50S ribosomal protein L33
2083	 64.14	0	2329437..2329673	-	78	148823274	rpmB	TBFG_12095	-	50S ribosomal protein L28
2084	 67.32	0	2329786..2331321	+	511	148823275	-	TBFG_12096	-	hypothetical protein
2085	 64.69	0	2331293..2331697	-	134	148823276	-	TBFG_12097	-	hypothetical protein
2086	 69.18	+1	2331781..2335365	-	1194	148823277	cobN	TBFG_12098	-	cobaltochelatase
2087	 67.09	0	2335443..2335676	+	77	148823278	-	TBFG_12099	-	hypothetical protein
2088	 72.89	+2	2336063..2337154	+	363	148823279	-	TBFG_12100	-	cobalamin biosynthesis protein cobG
2089	 72.25	+1	2337164..2337790	+	208	148823280	cobH	TBFG_12101	-	precorrin-8X methylmutase
2090	 70.73	+1	2337787..2339313	+	508	148823281	-	TBFG_12102	-	bifunctional protein, cobI-cobJ fusion protein: S-adenosyl-L-methionine-precorrin-2 methyl transferase + precorrin-3 methylase
2091	 59.48	-1	2339259..2340482	-	407	148823282	-	TBFG_12103	-	hypothetical protein
2092	 66.02	0	2340498..2341421	-	307	148823284	-	TBFG_12104	-	class A beta-lactamase blaC
2093	 67.41	0	2341178..2342113	+	311	148823283	-	TBFG_12105	-	RNA polymerase sigma factor SigC
2094	 66.67	0	2342103..2342837	-	244	148823285	-	TBFG_12106	-	cobalt-precorrin-6x reductase
2095	 67.33	0	2342834..2343589	-	251	148823286	-	TBFG_12107	-	precorrin-4 C11-methyltransferase cobM
2096	 68.29	0	2343586..2344758	-	390	148823287	-	TBFG_12108	-	precorrin-6y methyltransferase cobL
2097	 70.93	+1	2344826..2345575	-	249	148823288	-	TBFG_12109	-	short-chain type dehydrogenase
2098	 66.91	0	2345605..2346018	+	137	148823289	-	TBFG_12110	-	hypothetical protein
2099	 68.31	0	2346028..2347491	-	487	148823290	-	TBFG_12111	-	hypothetical protein
2100	 64.92	0	2347935..2348906	-	323	148823291	-	TBFG_12112	-	transmembrane protein
2101	 65.75	0	2349340..2349666	+	108	148823292	-	TBFG_12113	-	transposase
2102	 63.84	0	2349717..2350601	+	294	148823293	-	TBFG_12114	-	hypothetical protein
2103	 62.16	0	2350822..2351265	-	147	148823294	-	TBFG_12115	-	hypothetical protein
2104	 64.38	0	2351325..2353295	+	656	148823295	-	TBFG_12116	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.