IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1916	 66.06	0	2150737..2151891	+	384	148823107	-	TBFG_11924	-	dehydrogenase
1917	 61.73	-1	2151751..2152662	-	303	148823108	-	TBFG_11925	-	hypothetical protein
1918	 66.67	0	2152667..2153098	-	143	148823109	-	TBFG_11926	-	D-tyrosyl-tRNA deacylase
1919	 66.34	0	2153156..2153464	+	102	148823110	-	TBFG_11927	-	hypothetical protein
1920	 70.94	+1	2153430..2154506	-	358	148823111	-	TBFG_11928	-	lipoprotein lppD
1921	 65.87	0	2154506..2155894	-	462	148823112	-	TBFG_11929	-	lignin peroxidase lipJ
1922	 65.97	0	2155923..2157215	+	430	148823113	-	TBFG_11930	-	competence damage-inducible protein A
1923	 60.84	-1	2157267..2158535	-	422	148823114	-	TBFG_11931	-	sialic acid transport integral membrane protein nanT
1924	 58.27	-2	2158625..2159029	+	134	148823115	-	TBFG_11932	-	hypothetical protein
1925	 64.58	0	2159215..2159646	+	143	148823116	-	TBFG_11933	-	hypothetical protein
1926	 66.15	0	2159694..2160656	-	320	148823117	-	TBFG_11934	-	D-amino acid oxidase aao
1927	 64.76	0	2160686..2161156	-	156	148823118	-	TBFG_11935	-	hypothetical protein
1928	 65.28	0	2161496..2162143	-	215	148823119	-	TBFG_11936	-	hypothetical protein
1929	 64.60	0	2162150..2164372	-	740	148823120	-	TBFG_11937	-	catalase-peroxidase katG
1930	 62.25	0	2164410..2164862	-	150	148823121	-	TBFG_11938	-	ferric uptake regulation protein furA (fur)
1931	 65.20	0	2164967..2165581	-	204	148823122	-	TBFG_11939	-	hypothetical protein
1932	 68.48	0	2165643..2166248	-	201	148823123	-	TBFG_11940	-	lipoprotein lppC
1933	 65.17	0	2166348..2167352	-	334	148823124	-	TBFG_11941	-	oxidoreductase fadB5
1934	 65.07	0	2167452..2168204	+	250	148823125	-	TBFG_11942	-	hypothetical protein
1935	 62.25	0	2168182..2168589	-	135	148823126	-	TBFG_11943	-	hypothetical protein
1936	 65.40	0	2168724..2169827	+	367	148823127	-	TBFG_11944	-	isocitrate lyase aceAa
1937	 63.99	0	2169827..2171023	+	398	148823128	-	TBFG_11945	-	isocitrate lyase aceAb
1938	 59.81	-1	2171193..2175566	-	1457	148823129	-	TBFG_11946	-	PPE family protein
1939	 60.55	-1	2175904..2178945	-	1013	148823130	-	TBFG_11947	-	PPE family protein
1940	 65.16	0	2179316..2179780	-	154	148823131	-	TBFG_11948	-	hypothetical protein
1941	 63.66	0	2179878..2180741	+	287	148823132	-	TBFG_11949	-	hypothetical protein
1942	 62.89	0	2180779..2182050	-	423	148823133	-	TBFG_11950	-	lipoprotein lppF
1943	 63.80	0	2182322..2183437	+	371	148823134	-	TBFG_11951	-	lipoprotein
1944	 63.09	0	2183428..2184768	+	446	148823135	-	TBFG_11952	-	lipase lipD
1945	 65.88	0	2184805..2185185	-	126	148823136	-	TBFG_11953	-	hypothetical protein
1946	 64.90	0	2185342..2187204	+	620	148823137	-	TBFG_11954	-	acyl-CoA synthetase
1947	 61.88	-1	2187212..2187691	-	159	148823138	-	TBFG_11955	-	immunogenic protein mpt63
1948	 65.50	0	2187928..2188701	+	257	148823139	-	TBFG_11956	-	hypothetical protein
1949	 59.51	-1	2188705..2189472	-	255	148823140	-	TBFG_11957	-	short chain dehydrogenase
1950	 62.33	0	2189517..2190161	-	214	148823141	-	TBFG_11958	-	hypothetical protein
1951	 70.29	+1	2190173..2190697	-	174	148823142	-	TBFG_11959	-	hypothetical protein
1952	 68.31	0	2190715..2191506	-	263	148823143	-	TBFG_11960	-	transcriptional regulator
1953	 65.46	0	2191627..2192124	+	165	148823144	tpx	TBFG_11961	-	thiol peroxidase
1954	 68.86	0	2192121..2193212	-	363	148823145	-	TBFG_11962	-	acyl-CoA dehydrogenase fadE18
1955	 69.84	+1	2193214..2194443	-	409	148823146	-	TBFG_11963	-	acyl-CoA dehydrogenase fadE17
1956	 66.98	0	2194458..2195414	-	318	148823147	-	TBFG_11964	-	enoyl-CoA hydratase
1957	 65.68	0	2195639..2196748	+	369	148823148	-	TBFG_11965	-	monooxygenase
1958	 65.91	0	2196751..2199270	+	839	148823149	-	TBFG_11966	-	oxygenase
1959	 66.39	0	2199282..2200352	+	356	148823150	-	TBFG_11967	-	epoxide hydrolase ephB
1960	 67.25	0	2200349..2200864	+	171	148823151	-	TBFG_11968	-	oxidoreductase
1961	 69.02	+1	2200861..2201922	+	353	148823152	-	TBFG_11969	-	riboflavin biosynthesis protein ribA1 (GTP cyclohydrolase II)
1962	 67.32	0	2201919..2202689	+	256	148823153	-	TBFG_11970	-	short-chain type dehydrogenase/reductase
1963	 65.45	0	2202899..2203228	-	109	148823154	-	TBFG_11971	-	hypothetical protein
1964	 62.70	0	2203225..2203602	-	125	148823155	-	TBFG_11972	-	hypothetical protein
1965	 65.82	0	2203599..2204189	-	196	148823156	-	TBFG_11973	-	hypothetical protein
1966	 64.98	0	2204244..2205608	+	454	148823157	-	TBFG_11974	-	hypothetical protein
1967	 62.69	0	2205763..2206215	-	150	148823158	-	TBFG_11975	-	lipoprotein lppG
1968	 66.92	0	2206279..2206680	+	133	148823159	-	TBFG_11976	-	hypothetical protein
1969	 51.28	-2	2206969..2207319	-	116	148823160	-	TBFG_11977	-	hypothetical protein
1970	 63.01	0	2207330..2208232	-	300	148823161	-	TBFG_11978	-	hypothetical protein
1971	 60.42	-1	2208253..2208444	-	63	148823162	-	TBFG_11979	-	hypothetical protein
1972	 68.35	0	2208445..2208741	-	98	148823163	-	TBFG_11980	-	hypothetical protein
1973	 65.74	0	2208981..2209196	+	71	148823164	-	TBFG_11981	-	hypothetical protein
1974	 61.54	-1	2209193..2209504	+	103	148823165	-	TBFG_11982	-	hypothetical protein
1975	 61.60	-1	2209839..2210351	+	170	148823166	-	TBFG_11983	-	hypothetical protein
1976	 61.78	-1	2210393..2210842	+	149	148823167	-	TBFG_11984	-	transcriptional regulator
1977	 61.72	-1	2210839..2211384	+	181	148823168	-	TBFG_11985	-	hypothetical protein
1978	 63.09	0	2211273..2211887	-	204	148823169	-	TBFG_11986	-	hypothetical protein
1979	 61.95	-1	2211936..2212232	-	98	148823170	-	TBFG_11987	-	hypothetical protein
1980	 66.67	0	2212229..2212480	-	83	148823172	-	TBFG_11988	-	hypothetical protein
1981	 67.68	0	2212467..2212961	+	164	148823171	-	TBFG_11989	-	hypothetical protein
1982	 61.52	-1	2213121..2213528	-	135	148823173	-	TBFG_11990	-	hypothetical protein
1983	 63.74	0	2213532..2213804	-	90	148823174	-	TBFG_11991	-	hypothetical protein
1984	 66.34	0	2213837..2215057	-	406	148823175	-	TBFG_11992	-	MarR family transcriptional regulator
1985	 59.38	-1	2215276..2215728	-	150	148823176	-	TBFG_11993	-	hypothetical protein
1986	 65.41	0	2215944..2216342	+	132	148823177	-	TBFG_11994	-	integral membrane protein YrbE3a
1987	 63.38	0	2216326..2216751	+	141	148823178	-	TBFG_11995	-	integral membrane protein YrbE3a
1988	 65.69	0	2216761..2217576	+	271	148823179	-	TBFG_11996	-	integral membrane protein YrbE3b
1989	 65.96	0	2217581..2218858	+	425	148823180	-	TBFG_11997	-	MCE-family protein mce3A
1990	 65.99	0	2218855..2219883	+	342	148823181	-	TBFG_11998	-	MCE-family protein mce3B
1991	 68.21	0	2219880..2221112	+	410	148823182	-	TBFG_11999	-	MCE-family protein mce3C
1992	 66.75	0	2221109..2222380	+	423	148823183	-	TBFG_12000	-	MCE-family protein mce3D
1993	 66.49	0	2222377..2223510	+	377	148823184	-	TBFG_12001	-	MCE family lipoprotein LprM
1994	 65.83	0	2223511..2224824	+	437	148823185	-	TBFG_12002	-	MCE-family protein mce3F
1995	 67.36	0	2224846..2225421	+	191	148823186	-	TBFG_12003	-	MCE associated membrane protein
1996	 68.94	+1	2225418..2225900	+	160	148823187	-	TBFG_12004	-	MCE associated membrane protein
1997	 64.02	0	2225913..2226290	+	125	148823188	-	TBFG_12005	-	hypothetical protein
1998	 64.41	0	2226306..2226971	+	221	148823189	-	TBFG_12006	-	hypothetical protein
1999	 66.91	0	2227098..2227505	-	135	148823190	-	TBFG_12007	-	hypothetical protein
2000	 65.43	0	2228008..2229054	+	348	148823191	-	TBFG_12008	-	hypothetical protein
2001	 62.54	0	2229162..2230010	+	282	148823192	-	TBFG_12009	-	hypothetical protein
2002	 59.82	-1	2229973..2231418	-	481	148823193	-	TBFG_12010	-	permease
2003	 59.39	-1	2231597..2232283	-	228	148823194	-	TBFG_12011	-	immunogenic protein mpt64
2004	 59.13	-1	2232474..2233442	-	322	148823195	nrdF	TBFG_12012	-	ribonucleotide-diphosphate reductase subunit beta
2005	 66.43	0	2233667..2234086	-	139	148823196	-	TBFG_12013	-	hypothetical protein
2006	 64.82	0	2234498..2236174	+	558	148823197	-	TBFG_12014	-	PE-PGRS family protein
2007	 62.23	0	2236162..2236815	-	217	148823198	-	TBFG_12015	-	cutinase precursor cfp21
2008	 65.02	0	2237245..2238156	-	303	148823199	-	TBFG_12016	-	chromosome replication initiation inhibitor protein
2009	 66.17	0	2238265..2238864	+	199	148823200	-	TBFG_12017	-	integral membrane protein
2010	 59.91	-1	2239280..2239708	+	142	148823201	-	TBFG_12018	-	chitinase
2011	 70.19	+1	2239934..2240473	+	179	148823202	-	TBFG_12019	-	methyltransferase
2012	 62.92	0	2240993..2241553	-	186	148823203	-	TBFG_12020	-	hypothetical protein
2013	 62.28	0	2241550..2241891	-	113	148823204	-	TBFG_12021	-	transcriptional regulator
2014	 67.56	0	2242135..2242470	-	111	148823205	-	TBFG_12022	-	dehydrogenase
2015	 61.74	-1	2242559..2242903	-	114	148823206	-	TBFG_12023	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.