IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1866	 64.99	0	2104373..2104789	-	138	148823057	-	TBFG_11874	-	transcriptional regulator
1867	 64.54	0	2105067..2105489	+	140	148823058	-	TBFG_11875	-	hypothetical protein
1868	 67.00	0	2105538..2105840	+	100	148823059	ureA	TBFG_11876	-	urease subunit gamma
1869	 64.76	0	2105837..2106151	+	104	148823060	ureB	TBFG_11877	-	urease subunit beta
1870	 65.86	0	2106151..2107884	+	577	148823061	ureC	TBFG_11878	-	urease subunit alpha
1871	 71.07	+1	2107884..2108519	+	211	148823062	-	TBFG_11879	-	urease accessory protein ureF
1872	 67.26	0	2108530..2109204	+	224	148823063	-	TBFG_11880	-	urease accessory protein ureG
1873	 67.60	0	2109194..2109838	+	214	148823064	-	TBFG_11881	-	urease accessory protein ureD
1874	 64.08	0	2109841..2111232	-	463	148823065	-	TBFG_11882	-	NADH dehydrogenase ndh
1875	 63.64	0	2111374..2112297	-	307	148823066	-	TBFG_11883	-	oxidoreductase
1876	 68.88	+1	2112336..2113013	-	225	148823067	-	TBFG_11884	-	short chain dehydrogenase
1877	 62.85	0	2113175..2113960	+	261	148823068	-	TBFG_11885	-	molybdate-binding lipoprotein modA
1878	 66.54	0	2113963..2114757	+	264	148823069	-	TBFG_11886	-	molbdenum-transport integral membrane protein ABC transporter modB
1879	 67.48	0	2114764..2115873	+	369	148823070	-	TBFG_11887	-	molybdenum-transport ATP-binding protein ABC transporter modC
1880	 69.43	+1	2115926..2116903	+	325	148823071	-	TBFG_11888	-	alanine and proline rich secreted protein apa
1881	 62.42	0	2117355..2117660	+	101	148823072	-	TBFG_11889	-	transmembrane protein
1882	 68.59	0	2117735..2118775	+	346	148823073	-	TBFG_11890	-	alcohol dehydrogenase adhA
1883	 64.07	0	2118782..2119552	-	256	148823074	-	TBFG_11891	-	integral membrane protein
1884	 65.21	0	2119545..2120300	-	251	148823075	-	TBFG_11892	-	hypothetical protein
1885	 63.07	0	2120297..2121157	-	286	148823076	-	TBFG_11893	-	short chain dehydrogenase
1886	 66.63	0	2121259..2123667	+	802	148823077	-	TBFG_11894	-	hypothetical protein
1887	 66.53	0	2123955..2125439	+	494	148823078	-	TBFG_11895	-	acetyl-CoA acetyltransferase
1888	 66.86	0	2125538..2127637	+	699	148823079	-	TBFG_11896	-	hypothetical protein
1889	 64.56	0	2127651..2128886	-	411	148823080	-	TBFG_11897	-	reductase
1890	 62.42	0	2128986..2129621	-	211	148823081	-	TBFG_11898	-	hypothetical protein
1891	 63.85	0	2129686..2130075	-	129	148823082	-	TBFG_11899	-	hypothetical protein
1892	 66.27	0	2130098..2131342	-	414	148823083	-	TBFG_11900	-	L-lactate dehydrogenase (cytochrome) lldD2
1893	 63.47	0	2131365..2131802	+	145	148823084	-	TBFG_11901	-	hypothetical protein
1894	 63.12	0	2131857..2132561	+	234	148823085	-	TBFG_11902	-	hypothetical protein
1895	 65.77	0	2132572..2133015	+	147	148823086	-	TBFG_11903	-	hypothetical protein
1896	 56.67	-2	2133531..2134010	+	159	148823087	-	TBFG_11904	-	bacterioferritin bfrA
1897	 64.39	0	2134095..2136158	+	687	148823088	-	TBFG_11905	-	integral membrane protein
1898	 64.75	0	2136213..2137565	+	450	148823089	-	TBFG_11906	-	glutamine synthetase glnA3
1899	 63.15	0	2137568..2138704	+	378	148823090	-	TBFG_11907	-	hypothetical protein
1900	 64.24	0	2138732..2140048	-	438	148823091	-	TBFG_11908	-	cytochrome P450 140 cyp140
1901	 61.23	-1	2140098..2140520	-	140	148823092	-	TBFG_11909	-	lipoprotein lppE
1902	 64.27	0	2140561..2141394	-	277	148823093	-	TBFG_11910	-	short chain dehydrogenase
1903	 62.68	0	2141422..2141898	-	158	148823094	-	TBFG_11911	-	hypothetical protein
1904	 63.09	0	2141937..2142467	-	176	148823095	-	TBFG_11912	-	resuscitation-promoting factor rpfC
1905	 64.33	0	2142479..2143078	-	199	148823096	-	TBFG_11913	-	chorismate mutase
1906	 64.21	0	2143096..2144073	-	325	148823097	-	TBFG_11914	-	secreted antigen 85-B fbpB (fibronectin-binding protein B)
1907	 66.32	0	2144464..2145606	+	380	148823098	-	TBFG_11915	-	hypothetical protein
1908	 61.81	-1	2145576..2146295	-	239	148823099	-	TBFG_11916	-	hypothetical protein
1909	 65.83	0	2146877..2147233	-	118	148823100	-	TBFG_11917	-	hypothetical protein
1910	 63.07	0	2147292..2147903	-	203	148823101	-	TBFG_11918	-	hypothetical protein
1911	 66.18	0	2147957..2148364	+	135	148823102	-	TBFG_11919	-	hypothetical protein
1912	 63.78	0	2148381..2148692	+	103	148823103	-	TBFG_11920	-	hypothetical protein
1913	 61.19	-1	2148702..2148920	+	72	148823104	-	TBFG_11921	-	hypothetical protein
1914	 63.93	0	2148955..2150085	-	376	148823105	-	TBFG_11922	-	hypothetical protein
1915	 65.51	0	2150158..2150589	+	143	148823106	-	TBFG_11923	-	hypothetical protein
1916	 66.06	0	2150737..2151891	+	384	148823107	-	TBFG_11924	-	dehydrogenase
1917	 61.73	-1	2151751..2152662	-	303	148823108	-	TBFG_11925	-	hypothetical protein
1918	 66.67	0	2152667..2153098	-	143	148823109	-	TBFG_11926	-	D-tyrosyl-tRNA deacylase
1919	 66.34	0	2153156..2153464	+	102	148823110	-	TBFG_11927	-	hypothetical protein
1920	 70.94	+1	2153430..2154506	-	358	148823111	-	TBFG_11928	-	lipoprotein lppD
1921	 65.87	0	2154506..2155894	-	462	148823112	-	TBFG_11929	-	lignin peroxidase lipJ
1922	 65.97	0	2155923..2157215	+	430	148823113	-	TBFG_11930	-	competence damage-inducible protein A
1923	 60.84	-1	2157267..2158535	-	422	148823114	-	TBFG_11931	-	sialic acid transport integral membrane protein nanT
1924	 58.27	-2	2158625..2159029	+	134	148823115	-	TBFG_11932	-	hypothetical protein
1925	 64.58	0	2159215..2159646	+	143	148823116	-	TBFG_11933	-	hypothetical protein
1926	 66.15	0	2159694..2160656	-	320	148823117	-	TBFG_11934	-	D-amino acid oxidase aao
1927	 64.76	0	2160686..2161156	-	156	148823118	-	TBFG_11935	-	hypothetical protein
1928	 65.28	0	2161496..2162143	-	215	148823119	-	TBFG_11936	-	hypothetical protein
1929	 64.60	0	2162150..2164372	-	740	148823120	-	TBFG_11937	-	catalase-peroxidase katG
1930	 62.25	0	2164410..2164862	-	150	148823121	-	TBFG_11938	-	ferric uptake regulation protein furA (fur)
1931	 65.20	0	2164967..2165581	-	204	148823122	-	TBFG_11939	-	hypothetical protein
1932	 68.48	0	2165643..2166248	-	201	148823123	-	TBFG_11940	-	lipoprotein lppC
1933	 65.17	0	2166348..2167352	-	334	148823124	-	TBFG_11941	-	oxidoreductase fadB5
1934	 65.07	0	2167452..2168204	+	250	148823125	-	TBFG_11942	-	hypothetical protein
1935	 62.25	0	2168182..2168589	-	135	148823126	-	TBFG_11943	-	hypothetical protein
1936	 65.40	0	2168724..2169827	+	367	148823127	-	TBFG_11944	-	isocitrate lyase aceAa
1937	 63.99	0	2169827..2171023	+	398	148823128	-	TBFG_11945	-	isocitrate lyase aceAb
1938	 59.81	-1	2171193..2175566	-	1457	148823129	-	TBFG_11946	-	PPE family protein
1939	 60.55	-1	2175904..2178945	-	1013	148823130	-	TBFG_11947	-	PPE family protein
1940	 65.16	0	2179316..2179780	-	154	148823131	-	TBFG_11948	-	hypothetical protein
1941	 63.66	0	2179878..2180741	+	287	148823132	-	TBFG_11949	-	hypothetical protein
1942	 62.89	0	2180779..2182050	-	423	148823133	-	TBFG_11950	-	lipoprotein lppF
1943	 63.80	0	2182322..2183437	+	371	148823134	-	TBFG_11951	-	lipoprotein
1944	 63.09	0	2183428..2184768	+	446	148823135	-	TBFG_11952	-	lipase lipD
1945	 65.88	0	2184805..2185185	-	126	148823136	-	TBFG_11953	-	hypothetical protein
1946	 64.90	0	2185342..2187204	+	620	148823137	-	TBFG_11954	-	acyl-CoA synthetase
1947	 61.88	-1	2187212..2187691	-	159	148823138	-	TBFG_11955	-	immunogenic protein mpt63
1948	 65.50	0	2187928..2188701	+	257	148823139	-	TBFG_11956	-	hypothetical protein
1949	 59.51	-1	2188705..2189472	-	255	148823140	-	TBFG_11957	-	short chain dehydrogenase
1950	 62.33	0	2189517..2190161	-	214	148823141	-	TBFG_11958	-	hypothetical protein
1951	 70.29	+1	2190173..2190697	-	174	148823142	-	TBFG_11959	-	hypothetical protein
1952	 68.31	0	2190715..2191506	-	263	148823143	-	TBFG_11960	-	transcriptional regulator
1953	 65.46	0	2191627..2192124	+	165	148823144	tpx	TBFG_11961	-	thiol peroxidase
1954	 68.86	0	2192121..2193212	-	363	148823145	-	TBFG_11962	-	acyl-CoA dehydrogenase fadE18
1955	 69.84	+1	2193214..2194443	-	409	148823146	-	TBFG_11963	-	acyl-CoA dehydrogenase fadE17
1956	 66.98	0	2194458..2195414	-	318	148823147	-	TBFG_11964	-	enoyl-CoA hydratase
1957	 65.68	0	2195639..2196748	+	369	148823148	-	TBFG_11965	-	monooxygenase
1958	 65.91	0	2196751..2199270	+	839	148823149	-	TBFG_11966	-	oxygenase
1959	 66.39	0	2199282..2200352	+	356	148823150	-	TBFG_11967	-	epoxide hydrolase ephB
1960	 67.25	0	2200349..2200864	+	171	148823151	-	TBFG_11968	-	oxidoreductase
1961	 69.02	+1	2200861..2201922	+	353	148823152	-	TBFG_11969	-	riboflavin biosynthesis protein ribA1 (GTP cyclohydrolase II)
1962	 67.32	0	2201919..2202689	+	256	148823153	-	TBFG_11970	-	short-chain type dehydrogenase/reductase
1963	 65.45	0	2202899..2203228	-	109	148823154	-	TBFG_11971	-	hypothetical protein
1964	 62.70	0	2203225..2203602	-	125	148823155	-	TBFG_11972	-	hypothetical protein
1965	 65.82	0	2203599..2204189	-	196	148823156	-	TBFG_11973	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.