IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1606	 67.43	0	1785675..1786724	+	349	148822797	-	TBFG_11606	-	biotin synthase
1607	 66.97	0	1786961..1787626	+	221	148822798	-	TBFG_11607	-	hypothetical protein
1608	 64.88	0	1787791..1789131	-	446	148822799	-	TBFG_11608	-	hypothetical protein
1609	 64.98	0	1789388..1790098	-	236	148822800	-	TBFG_11609	-	hypothetical protein
1610	 65.81	0	1790147..1791196	+	349	148822801	-	TBFG_11610	-	quinolinate synthetase
1611	 70.33	+1	1791196..1792779	+	527	148822802	-	TBFG_11611	-	L-aspartate oxidase
1612	 66.08	0	1792779..1793636	+	285	148822803	-	TBFG_11612	-	nicotinate-nucleotide pyrophosphorylase
1613	 65.35	0	1793685..1794443	+	252	148822804	-	TBFG_11613	-	hypothetical protein
1614	 64.72	0	1794464..1794874	-	136	148822805	-	TBFG_11614	-	hypothetical protein
1615	 69.81	+1	1794956..1796290	+	444	148822806	hisD	TBFG_11615	-	histidinol dehydrogenase
1616	 62.99	0	1796287..1797429	+	380	148822807	-	TBFG_11616	-	histidinol-phosphate aminotransferase
1617	 63.82	0	1797426..1798058	+	210	148822808	hisB	TBFG_11617	-	imidazoleglycerol-phosphate dehydratase
1618	 64.25	0	1798055..1798675	+	206	148822809	hisH	TBFG_11618	-	imidazole glycerol phosphate synthase subunit HisH
1619	 66.67	0	1798688..1799422	+	244	148822810	-	TBFG_11619	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1620	 64.94	0	1799430..1800242	+	270	148822811	-	TBFG_11620	-	inositol-monophosphatase impA
1621	 68.28	0	1800244..1801047	+	267	148822812	-	TBFG_11621	-	imidazole glycerol phosphate synthase subunit HisF
1622	 62.07	-1	1801044..1801391	+	115	148822813	hisI	TBFG_11622	-	phosphoribosyl-AMP cyclohydrolase
1623	 66.48	0	1801572..1802654	+	360	148822814	-	TBFG_11623	-	ionic transporter integral membrane protein chaA
1624	 61.29	-1	1802689..1803153	-	154	148822815	-	TBFG_11624	-	peroxidoxin bcpB
1625	 65.38	0	1803294..1804844	+	516	148822816	-	TBFG_11625	-	anthranilate synthase component I
1626	 70.48	+1	1804834..1805541	+	235	148822817	-	TBFG_11626	-	hypothetical protein
1627	 66.43	0	1805601..1806449	+	282	148822818	trpC	TBFG_11627	-	indole-3-glycerol-phosphate synthase
1628	 62.77	0	1806518..1807750	+	410	148822819	-	TBFG_11628	-	tryptophan synthase subunit beta
1629	 65.81	0	1807750..1808562	+	270	148822820	trpA	TBFG_11629	-	tryptophan synthase subunit alpha
1630	 64.39	0	1808562..1809968	+	468	148822821	-	TBFG_11630	-	prolipoprotein diacylglyceryl transferase
1631	 63.72	0	1810644..1811084	+	146	148822822	-	TBFG_11631	-	hypothetical protein
1632	 63.41	0	1811074..1811472	+	132	148822823	-	TBFG_11632	-	hypothetical protein
1633	 66.31	0	1811580..1812998	+	472	148822824	-	TBFG_11633	-	pyruvate kinase
1634	 62.24	0	1813006..1813908	+	300	148822825	-	TBFG_11634	-	acyl-CoA thioesterase II tesB1
1635	 65.98	0	1813966..1815420	+	484	148822826	-	TBFG_11635	-	hypothetical protein
1636	 69.15	+1	1815354..1817084	-	576	148822827	-	TBFG_11636	-	transmembrane ATP-binding protein ABC transporter cydC
1637	 68.62	0	1817081..1818664	-	527	148822828	-	TBFG_11637	-	transmembrane ATP-binding protein ABC transporter cydD
1638	 63.78	0	1818751..1819791	-	346	148822829	-	TBFG_11638	-	integral membrane cytochrome D ubiquinol oxidase subunit II cydB
1639	 61.39	-1	1819821..1821278	-	485	148822830	-	TBFG_11639	-	integral membrane cytochrome D ubiquinol oxidase subunit I cydA
1640	 61.05	-1	1821389..1821976	-	195	148822831	-	TBFG_11640	-	hypothetical protein
1641	 65.47	0	1822005..1823336	-	443	148822832	-	TBFG_11641	-	membrane-anchored adenylyl cyclase cya
1642	 61.65	-1	1823571..1824188	+	205	148822833	-	TBFG_11642	-	two component system transcriptional regulator
1643	 67.66	0	1824256..1825464	-	402	148822834	-	TBFG_11643	-	lipid-transfer protein
1644	 66.06	0	1825461..1825952	-	163	148822835	-	TBFG_11644	-	hypothetical protein
1645	 67.48	0	1826056..1828770	+	904	148822836	-	TBFG_11645	-	DNA polymerase I
1646	 62.93	0	1828933..1830378	+	481	148822837	rpsA	TBFG_11646	-	30S ribosomal protein S1
1647	 67.16	0	1830404..1831627	+	407	148822838	coaE	TBFG_11647	-	fused dephospho-CoA kinase/unknown domain-containing protein
1648	 67.12	0	1831778..1832221	-	147	148822839	-	TBFG_11648	-	hypothetical protein
1649	 66.00	0	1832466..1834562	+	698	148822840	-	TBFG_11649	-	excinuclease ABC subunit B
1650	 67.02	0	1834559..1835974	+	471	148822841	-	TBFG_11650	-	drug efflux membrane protein
1651	 64.84	0	1835963..1837660	-	565	148822842	-	TBFG_11651	-	transmembrane protein
1652	 63.72	0	1837842..1838282	+	146	148822843	-	TBFG_11652	-	hypothetical protein
1653	 66.54	0	1838289..1839083	-	264	148822844	-	TBFG_11653	-	hypothetical protein
1654	 66.36	0	1839132..1842050	+	972	148822845	uvrA	TBFG_11654	-	excinuclease ABC subunit A
1655	 65.50	0	1842107..1842364	-	85	148822846	-	TBFG_11655	-	hypothetical protein
1656	 66.53	0	1842380..1843849	-	489	148822847	-	TBFG_11656	-	hypothetical protein
1657	 64.65	0	1843908..1847426	-	1172	148822848	lysS	TBFG_11657	-	lysyl-tRNA synthetase
1658	 62.05	-1	1847664..1848269	+	201	148822849	infC	TBFG_11658	-	translation initiation factor IF-3
1659	 68.21	0	1848319..1848513	+	64	148822850	rpmI	TBFG_11659	-	50S ribosomal protein L35
1660	 66.15	0	1848575..1848964	+	129	148822851	rplT	TBFG_11660	-	50S ribosomal protein L20
1661	 69.73	+1	1848997..1849779	+	260	148822852	-	TBFG_11661	-	23S rRNA methyltransferase tsnR
1662	 63.45	0	1849790..1850845	-	351	148822853	-	TBFG_11662	-	hypothetical protein
1663	 65.17	0	1851155..1852087	+	310	148822854	-	TBFG_11663	-	PE family protein
1664	 66.88	0	1852165..1853115	+	316	148822855	-	TBFG_11664	-	hypothetical protein
1665	 66.67	0	1853122..1853928	+	268	148822856	-	TBFG_11665	-	hypothetical protein
1666	 66.28	0	1854124..1855149	+	341	148822857	pheS	TBFG_11666	-	phenylalanyl-tRNA synthetase subunit alpha
1667	 68.95	+1	1855149..1857644	+	831	148822858	pheT	TBFG_11667	-	phenylalanyl-tRNA synthetase subunit beta
1668	 67.18	0	1857738..1858898	-	386	148822859	-	TBFG_11668	-	PE-PGRS family protein
1669	 73.76	+2	1859123..1860772	-	549	148822860	-	TBFG_11669	-	PE-PGRS family protein
1670	 69.69	+1	1860966..1862024	+	352	148822861	argC	TBFG_11670	-	N-acetyl-gamma-glutamyl-phosphate reductase
1671	 71.19	+1	1862021..1863235	+	404	148822862	argJ	TBFG_11671	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1672	 68.25	0	1863232..1864116	+	294	148822863	-	TBFG_11672	-	acetylglutamate kinase
1673	 71.82	+1	1864113..1865315	+	400	148822864	argD	TBFG_11673	-	acetylornithine aminotransferase
1674	 68.83	0	1865312..1866235	+	307	148822865	-	TBFG_11674	-	ornithine carbamoyltransferase
1675	 72.88	+2	1866214..1866744	+	176	148822866	-	TBFG_11675	-	arginine repressor
1676	 67.84	0	1866753..1867949	+	398	148822867	-	TBFG_11676	-	argininosuccinate synthase
1677	 71.05	+1	1868029..1869441	+	470	148822868	-	TBFG_11677	-	argininosuccinate lyase
1678	 66.48	0	1869550..1870611	+	353	148822869	-	TBFG_11678	-	chalcone synthase pks10
1679	 67.37	0	1870694..1877074	+	2126	148822870	-	TBFG_11679	-	polyketide synthase pks7
1680	 64.84	0	1877094..1881902	+	1602	148822871	-	TBFG_11680	-	polyketide synthase pks8
1681	 62.96	0	1881902..1883410	+	502	148822872	-	TBFG_11681	-	polyketide synthase pks17
1682	 63.79	0	1883416..1886469	+	1017	148822873	-	TBFG_11682	-	polyketide synthase pks9
1683	 65.35	0	1886616..1887677	+	353	148822874	-	TBFG_11683	-	chalcone synthase pks11
1684	 65.74	0	1887660..1888952	-	430	148822875	-	TBFG_11684	-	cytochrome P450 139 cyp139
1685	 67.62	0	1888967..1890742	-	591	148822876	-	TBFG_11685	-	macrolide ABC transporter ATP-binding protein
1686	 60.61	-1	1890954..1891316	+	120	148822877	-	TBFG_11686	-	hypothetical protein
1687	 61.21	-1	1891349..1891696	+	115	148822878	-	TBFG_11687	-	hypothetical protein
1688	 62.09	0	1891704..1892096	+	130	148822879	-	TBFG_11688	-	hypothetical protein
1689	 67.64	0	1892105..1893436	-	443	148822880	-	TBFG_11689	-	integral membrane transport protein
1690	 63.99	0	1893529..1894461	-	310	148822881	-	TBFG_11690	-	hypothetical protein
1691	 64.54	0	1894489..1895145	-	218	148822882	-	TBFG_11691	-	transcriptional regulator
1692	 64.63	0	1895470..1896204	-	244	148822883	-	TBFG_11692	-	transcriptional regulator
1693	 62.13	0	1896276..1896980	+	234	148822884	-	TBFG_11693	-	hypothetical protein
1694	 63.75	0	1896977..1897525	+	182	148822885	-	TBFG_11694	-	lipoprotein dsbF
1695	 69.10	+1	1897626..1898528	+	300	148822886	-	TBFG_11695	-	hypothetical protein
1696	 67.47	0	1898528..1899649	+	373	148822887	-	TBFG_11696	-	acyl-CoA dehydrogenase fadE16
1697	 64.85	0	1899658..1900482	+	274	148822888	-	TBFG_11697	-	hypothetical protein
1698	 68.28	0	1900479..1901471	+	330	148822889	-	TBFG_11698	-	molybdopterin biosynthesis protein moeX
1699	 60.02	-1	1901632..1902549	+	305	148822890	-	TBFG_11699	-	hypothetical protein
1700	 65.77	0	1902823..1905822	+	999	148822891	-	TBFG_11700	-	acyl-CoA synthetase
1701	 62.82	0	1906005..1906628	-	207	148822892	-	TBFG_11701	-	hypothetical protein
1702	 63.44	0	1906630..1907310	-	226	148822893	-	TBFG_11702	-	ABC-2 type transport system permease protein
1703	 63.93	0	1907382..1908149	-	255	148822894	-	TBFG_11703	-	ATP-binding protein ABC transporter
1704	 70.59	+1	1908208..1908819	+	203	148822895	-	TBFG_11704	-	3-methyladenine DNA glycosylase
1705	 64.71	0	1908831..1910105	+	424	148822896	-	TBFG_11705	-	tyrosyl-tRNA synthetase
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.