IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1566	 68.35	0	1738247..1739374	+	375	148822757	-	TBFG_11566	-	hypothetical protein
1567	 65.49	0	1739371..1740048	+	225	148822758	-	TBFG_11567	-	transcriptional regulator
1568	 68.78	0	1740613..1740849	+	78	148822759	-	TBFG_11568	-	hypothetical protein
1569	 62.60	0	1741156..1744281	+	1041	148822760	ileS	TBFG_11569	-	isoleucyl-tRNA synthetase
1570	 68.10	0	1744493..1745884	+	463	148822761	-	TBFG_11570	-	DNA polymerase IV
1571	 69.62	+1	1745849..1746829	-	326	148822763	-	TBFG_11571	-	L-aparaginase ansA
1572	 64.74	0	1746815..1747489	+	224	148822762	lspA	TBFG_11572	-	lipoprotein signal peptidase
1573	 65.37	0	1747482..1748408	+	308	148822764	-	TBFG_11573	-	pseudouridylate synthase
1574	 63.47	0	1748415..1749008	-	197	148822765	-	TBFG_11574	-	lipoprotein lprI
1575	 62.29	0	1749063..1749473	-	136	148822766	-	TBFG_11575	-	hemoglobin glbN
1576	 61.50	-1	1749701..1750726	+	341	148822767	-	TBFG_11576	-	fatty acyl-CoA reductase
1577	 65.30	0	1750731..1751534	+	267	148822768	-	TBFG_11577	-	ketoacyl reductase
1578	 62.72	0	1751556..1751783	+	75	148822769	-	TBFG_11578	-	hypothetical protein
1579	 65.97	0	1751832..1752263	+	143	148822770	-	TBFG_11579	-	hypothetical protein
1580	 64.16	0	1752331..1755885	+	1184	148822771	dnaE	TBFG_11580	-	DNA polymerase III subunit alpha
1581	 62.64	0	1755934..1758216	-	760	148822772	-	TBFG_11581	-	PPE family protein
1582	 64.63	0	1758354..1760069	+	571	148822773	-	TBFG_11582	-	fatty-acid-CoA ligase fadD11
1583	 64.04	0	1760083..1761948	+	621	148822774	-	TBFG_11583	-	glycerol-3-phosphate acyltransferase
1584	 63.36	0	1762319..1764070	+	583	148822775	-	TBFG_11584	-	fumarate reductase flavoprotein subunit
1585	 63.43	0	1764076..1764816	+	246	148822776	-	TBFG_11585	-	fumarate reductase iron-sulfur subunit frdB
1586	 60.10	-1	1764813..1765193	+	126	148822777	-	TBFG_11586	-	fumarate reductase subunit C
1587	 65.87	0	1765190..1765567	+	125	148822778	-	TBFG_11587	-	fumarate reductase subunit D
1588	 64.86	0	1765635..1766243	+	202	148822779	-	TBFG_11588	-	regulatory protein
1589	 61.64	-1	1766382..1767575	+	397	148822780	-	TBFG_11589	-	transmembrane transport protein mmpL6
1590	 66.44	0	1767585..1768031	+	148	148822781	-	TBFG_11590	-	hypothetical protein
1591	 66.59	0	1768066..1769355	+	429	148822782	-	TBFG_11591	-	threonine dehydratase
1592	 62.10	0	1769393..1769611	+	72	148822783	-	TBFG_11592	-	hypothetical protein
1593	 60.74	-1	1769617..1770021	+	134	148822784	-	TBFG_11593	-	hypothetical protein
1594	 65.17	0	1770038..1771780	-	580	148822785	-	TBFG_11594	-	maltooligosyltrehalose trehalohydrolase treZ
1595	 66.67	0	1771773..1774070	-	765	148822786	-	TBFG_11595	-	maltooligosyltrehalose synthase treY
1596	 61.73	-1	1774074..1776239	-	721	148822787	-	TBFG_11596	-	maltooligosyltrehalose synthase treX
1597	 63.93	0	1776278..1778467	-	729	148822788	-	TBFG_11597	-	hypothetical protein
1598	 68.00	0	1778566..1779315	-	249	148822789	-	TBFG_11598	-	inv protein
1599	 60.91	-1	1779498..1780070	-	190	148822791	-	TBFG_11599	-	hypothetical protein
1600	 69.63	+1	1780030..1781343	+	437	148822790	-	TBFG_11600	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1601	 72.44	+2	1781340..1782500	+	386	148822792	-	TBFG_11601	-	8-amino-7-oxononanoate synthase
1602	 72.69	+2	1782497..1783177	+	226	148822793	bioD	TBFG_11602	-	dithiobiotin synthetase
1603	 71.76	+1	1783177..1783686	+	169	148822794	-	TBFG_11603	-	hypothetical protein
1604	 67.50	0	1783832..1784554	-	240	148822795	-	TBFG_11604	-	REP13E12 repeat-containing protein
1605	 65.92	0	1784559..1785227	-	222	148822796	-	TBFG_11605	-	REP13E12 repeat-containing protein
1606	 67.43	0	1785675..1786724	+	349	148822797	-	TBFG_11606	-	biotin synthase
1607	 66.97	0	1786961..1787626	+	221	148822798	-	TBFG_11607	-	hypothetical protein
1608	 64.88	0	1787791..1789131	-	446	148822799	-	TBFG_11608	-	hypothetical protein
1609	 64.98	0	1789388..1790098	-	236	148822800	-	TBFG_11609	-	hypothetical protein
1610	 65.81	0	1790147..1791196	+	349	148822801	-	TBFG_11610	-	quinolinate synthetase
1611	 70.33	+1	1791196..1792779	+	527	148822802	-	TBFG_11611	-	L-aspartate oxidase
1612	 66.08	0	1792779..1793636	+	285	148822803	-	TBFG_11612	-	nicotinate-nucleotide pyrophosphorylase
1613	 65.35	0	1793685..1794443	+	252	148822804	-	TBFG_11613	-	hypothetical protein
1614	 64.72	0	1794464..1794874	-	136	148822805	-	TBFG_11614	-	hypothetical protein
1615	 69.81	+1	1794956..1796290	+	444	148822806	hisD	TBFG_11615	-	histidinol dehydrogenase
1616	 62.99	0	1796287..1797429	+	380	148822807	-	TBFG_11616	-	histidinol-phosphate aminotransferase
1617	 63.82	0	1797426..1798058	+	210	148822808	hisB	TBFG_11617	-	imidazoleglycerol-phosphate dehydratase
1618	 64.25	0	1798055..1798675	+	206	148822809	hisH	TBFG_11618	-	imidazole glycerol phosphate synthase subunit HisH
1619	 66.67	0	1798688..1799422	+	244	148822810	-	TBFG_11619	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1620	 64.94	0	1799430..1800242	+	270	148822811	-	TBFG_11620	-	inositol-monophosphatase impA
1621	 68.28	0	1800244..1801047	+	267	148822812	-	TBFG_11621	-	imidazole glycerol phosphate synthase subunit HisF
1622	 62.07	-1	1801044..1801391	+	115	148822813	hisI	TBFG_11622	-	phosphoribosyl-AMP cyclohydrolase
1623	 66.48	0	1801572..1802654	+	360	148822814	-	TBFG_11623	-	ionic transporter integral membrane protein chaA
1624	 61.29	-1	1802689..1803153	-	154	148822815	-	TBFG_11624	-	peroxidoxin bcpB
1625	 65.38	0	1803294..1804844	+	516	148822816	-	TBFG_11625	-	anthranilate synthase component I
1626	 70.48	+1	1804834..1805541	+	235	148822817	-	TBFG_11626	-	hypothetical protein
1627	 66.43	0	1805601..1806449	+	282	148822818	trpC	TBFG_11627	-	indole-3-glycerol-phosphate synthase
1628	 62.77	0	1806518..1807750	+	410	148822819	-	TBFG_11628	-	tryptophan synthase subunit beta
1629	 65.81	0	1807750..1808562	+	270	148822820	trpA	TBFG_11629	-	tryptophan synthase subunit alpha
1630	 64.39	0	1808562..1809968	+	468	148822821	-	TBFG_11630	-	prolipoprotein diacylglyceryl transferase
1631	 63.72	0	1810644..1811084	+	146	148822822	-	TBFG_11631	-	hypothetical protein
1632	 63.41	0	1811074..1811472	+	132	148822823	-	TBFG_11632	-	hypothetical protein
1633	 66.31	0	1811580..1812998	+	472	148822824	-	TBFG_11633	-	pyruvate kinase
1634	 62.24	0	1813006..1813908	+	300	148822825	-	TBFG_11634	-	acyl-CoA thioesterase II tesB1
1635	 65.98	0	1813966..1815420	+	484	148822826	-	TBFG_11635	-	hypothetical protein
1636	 69.15	+1	1815354..1817084	-	576	148822827	-	TBFG_11636	-	transmembrane ATP-binding protein ABC transporter cydC
1637	 68.62	0	1817081..1818664	-	527	148822828	-	TBFG_11637	-	transmembrane ATP-binding protein ABC transporter cydD
1638	 63.78	0	1818751..1819791	-	346	148822829	-	TBFG_11638	-	integral membrane cytochrome D ubiquinol oxidase subunit II cydB
1639	 61.39	-1	1819821..1821278	-	485	148822830	-	TBFG_11639	-	integral membrane cytochrome D ubiquinol oxidase subunit I cydA
1640	 61.05	-1	1821389..1821976	-	195	148822831	-	TBFG_11640	-	hypothetical protein
1641	 65.47	0	1822005..1823336	-	443	148822832	-	TBFG_11641	-	membrane-anchored adenylyl cyclase cya
1642	 61.65	-1	1823571..1824188	+	205	148822833	-	TBFG_11642	-	two component system transcriptional regulator
1643	 67.66	0	1824256..1825464	-	402	148822834	-	TBFG_11643	-	lipid-transfer protein
1644	 66.06	0	1825461..1825952	-	163	148822835	-	TBFG_11644	-	hypothetical protein
1645	 67.48	0	1826056..1828770	+	904	148822836	-	TBFG_11645	-	DNA polymerase I
1646	 62.93	0	1828933..1830378	+	481	148822837	rpsA	TBFG_11646	-	30S ribosomal protein S1
1647	 67.16	0	1830404..1831627	+	407	148822838	coaE	TBFG_11647	-	fused dephospho-CoA kinase/unknown domain-containing protein
1648	 67.12	0	1831778..1832221	-	147	148822839	-	TBFG_11648	-	hypothetical protein
1649	 66.00	0	1832466..1834562	+	698	148822840	-	TBFG_11649	-	excinuclease ABC subunit B
1650	 67.02	0	1834559..1835974	+	471	148822841	-	TBFG_11650	-	drug efflux membrane protein
1651	 64.84	0	1835963..1837660	-	565	148822842	-	TBFG_11651	-	transmembrane protein
1652	 63.72	0	1837842..1838282	+	146	148822843	-	TBFG_11652	-	hypothetical protein
1653	 66.54	0	1838289..1839083	-	264	148822844	-	TBFG_11653	-	hypothetical protein
1654	 66.36	0	1839132..1842050	+	972	148822845	uvrA	TBFG_11654	-	excinuclease ABC subunit A
1655	 65.50	0	1842107..1842364	-	85	148822846	-	TBFG_11655	-	hypothetical protein
1656	 66.53	0	1842380..1843849	-	489	148822847	-	TBFG_11656	-	hypothetical protein
1657	 64.65	0	1843908..1847426	-	1172	148822848	lysS	TBFG_11657	-	lysyl-tRNA synthetase
1658	 62.05	-1	1847664..1848269	+	201	148822849	infC	TBFG_11658	-	translation initiation factor IF-3
1659	 68.21	0	1848319..1848513	+	64	148822850	rpmI	TBFG_11659	-	50S ribosomal protein L35
1660	 66.15	0	1848575..1848964	+	129	148822851	rplT	TBFG_11660	-	50S ribosomal protein L20
1661	 69.73	+1	1848997..1849779	+	260	148822852	-	TBFG_11661	-	23S rRNA methyltransferase tsnR
1662	 63.45	0	1849790..1850845	-	351	148822853	-	TBFG_11662	-	hypothetical protein
1663	 65.17	0	1851155..1852087	+	310	148822854	-	TBFG_11663	-	PE family protein
1664	 66.88	0	1852165..1853115	+	316	148822855	-	TBFG_11664	-	hypothetical protein
1665	 66.67	0	1853122..1853928	+	268	148822856	-	TBFG_11665	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.