IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1469	 76.02	+2	1622571..1624046	-	491	148822660	-	TBFG_11469	-	PE-PGRS family protein
1470	 67.23	0	1624153..1626453	+	766	148822661	-	TBFG_11470	-	molybdopterin oxidoreductase
1471	 65.64	0	1626569..1627054	-	161	148822662	-	TBFG_11471	-	hypothetical protein
1472	 63.26	0	1627649..1628059	-	136	148822663	-	TBFG_11472	-	hypothetical protein
1473	 67.88	0	1628076..1628819	-	247	148822664	-	TBFG_11473	-	6-phosphogluconolactonase
1474	 66.78	0	1628816..1629727	-	303	148822665	-	TBFG_11474	-	oxpP cycle protein opcA
1475	 65.89	0	1629780..1631324	-	514	148822666	-	TBFG_11475	-	glucose-6-phosphate 1-dehydrogenase
1476	 64.17	0	1631321..1632442	-	373	148822667	-	TBFG_11476	-	transaldolase
1477	 67.81	0	1632459..1634561	-	700	148822668	-	TBFG_11477	-	transketolase
1478	 78.39	+2	1635000..1639223	-	1407	148822669	-	TBFG_11478	-	PE-PGRS family protein
1479	 66.13	0	1639625..1640551	+	308	148822670	-	TBFG_11479	-	protoheme IX farnesyltransferase
1480	 77.51	+2	1640600..1642813	-	737	148822671	-	TBFG_11480	-	PE-PGRS family protein
1481	 63.82	0	1642932..1644230	+	432	148822672	-	TBFG_11481	-	transcriptional activator protein
1482	 67.17	0	1644258..1645244	-	328	148822673	-	TBFG_11482	-	quinone reductase qor (NADPH:quinone reductase) (zeta-crystallin protein)
1483	 66.78	0	1645264..1646127	+	287	148822674	-	TBFG_11483	-	hypothetical protein
1484	 68.70	0	1646077..1647009	-	310	148822675	-	TBFG_11484	-	antibiotic ABC transporter membrane protein
1485	 66.16	0	1647121..1647906	-	261	148822676	-	TBFG_11485	-	antibiotic ABC transporter membrane protein
1486	 67.73	0	1647903..1648844	-	313	148822677	-	TBFG_11486	-	antibiotic ABC transporter ATP-binding protein
1487	 67.00	0	1649000..1650775	-	591	148822678	-	TBFG_11487	-	integral membrane protein
1488	 69.76	+1	1650823..1651629	+	268	148822679	-	TBFG_11488	-	transcriptional regulator
1489	 61.71	-1	1651626..1654166	+	846	148822680	-	TBFG_11489	-	hypothetical protein
1490	 67.67	0	1654163..1655356	+	397	148822681	-	TBFG_11490	-	hypothetical protein
1491	 65.17	0	1655353..1656153	+	266	148822682	-	TBFG_11491	-	ATP-binding protein ABC transporter
1492	 67.86	0	1656155..1657408	+	417	148822683	-	TBFG_11492	-	cysteine desulfurase csd
1493	 64.01	0	1657405..1657893	+	162	148822684	-	TBFG_11493	-	nitrogen fixation-like protein
1494	 65.80	0	1657868..1658215	+	115	148822685	-	TBFG_11494	-	hypothetical protein
1495	 63.77	0	1658310..1660139	-	609	148822686	-	TBFG_11495	-	acyl-CoA dehydrogenase fadE15
1496	 75.27	+2	1660246..1661373	-	375	148822687	-	TBFG_11496	-	PE-PGRS family protein
1497	 66.77	0	1661600..1663573	+	657	148822688	-	TBFG_11497	-	cation transporter ATPase D ctpD
1498	 57.33	-2	1663617..1663991	+	124	148822689	-	TBFG_11498	-	thioredoxin trxA
1499	 63.44	0	1664007..1664378	+	123	148822690	-	TBFG_11499	-	thioredoxin trxB1
1500	 64.92	0	1664400..1665257	+	285	148822691	-	TBFG_11500	-	enoyl-CoA hydratase
1501	 67.10	0	1665293..1666921	+	542	148822692	-	TBFG_11501	-	macrolide ABC transporter ATP-binding protein
1502	 67.71	0	1667018..1667209	+	63	148822693	-	TBFG_11502	-	transcriptional regulator
1503	 66.49	0	1667278..1667841	-	187	148822694	-	TBFG_11503	-	transcriptional regulator
1504	 62.99	0	1667852..1670683	-	943	148822695	-	TBFG_11504	-	aconitate hydratase
1505	 63.46	0	1670841..1671401	+	186	148822696	-	TBFG_11505	-	hypothetical protein
1506	 67.02	0	1671627..1673045	+	472	148822697	-	TBFG_11506	-	invasion protein
1507	 66.27	0	1673020..1673781	+	253	148822698	-	TBFG_11507	-	invasion protein
1508	 65.70	0	1673920..1675053	+	377	148822699	-	TBFG_11508	-	transcriptional regulatory protein moxR1
1509	 68.34	0	1675050..1676003	+	317	148822700	-	TBFG_11509	-	hypothetical protein
1510	 65.58	0	1676014..1677021	+	335	148822701	-	TBFG_11510	-	hypothetical protein
1511	 65.72	0	1677094..1677936	-	280	148822702	-	TBFG_11511	-	hypothetical protein
1512	 64.38	0	1678077..1678820	+	247	148822703	-	TBFG_11512	-	3-oxoacyl-[acyl-carrier protein] reductase fabG1
1513	 65.43	0	1678839..1679648	+	269	148822704	-	TBFG_11513	-	enoyl-(acyl carrier protein) reductase
1514	 66.09	0	1679654..1680688	+	344	148822705	hemH	TBFG_11514	-	ferrochelatase
1515	 65.90	0	1680654..1681562	-	302	148822706	-	TBFG_11515	-	hypothetical protein
1516	 67.13	0	1681578..1682012	+	144	148822707	-	TBFG_11516	-	hypothetical protein
1517	 66.58	0	1682034..1683179	+	381	148822708	-	TBFG_11517	-	hypothetical protein
1518	 63.03	0	1683189..1683545	+	118	148822709	-	TBFG_11518	-	hypothetical protein
1519	 68.83	0	1683579..1683809	+	76	148822710	-	TBFG_11519	-	hypothetical protein
1520	 57.03	-2	1683959..1685266	+	435	148822711	-	TBFG_11520	-	hypothetical protein
1521	 66.93	0	1685845..1686603	-	252	148822712	-	TBFG_11521	-	hypothetical protein
1522	 70.09	+1	1686770..1688641	+	623	148822713	-	TBFG_11522	-	methylmalonyl-CoA mutase small subunit mutA
1523	 67.11	0	1688642..1690894	+	750	148822714	-	TBFG_11523	-	methylmalonyl-CoA mutase
1524	 64.03	0	1690908..1691210	+	100	148822715	-	TBFG_11524	-	hypothetical protein
1525	 63.21	0	1691207..1691524	+	105	148822716	-	TBFG_11525	-	hypothetical protein
1526	 67.76	0	1691521..1692525	+	334	148822717	-	TBFG_11526	-	arginine/ornithine transport system ATPase
1527	 67.52	0	1692581..1693867	+	428	148822718	-	TBFG_11527	-	esterase lipL
1528	 58.58	-2	1693940..1694557	-	205	148822719	-	TBFG_11528	-	methyltransferase
1529	 62.91	0	1694771..1694983	-	70	148822720	-	TBFG_11529	-	hypothetical protein
1530	 66.17	0	1695044..1695442	+	132	148822721	-	TBFG_11530	-	hypothetical protein
1531	 54.91	-2	1695487..1696515	+	342	148822722	-	TBFG_11531	-	glycosyltransferase
1532	 54.14	-2	1696527..1697348	+	273	148822723	-	TBFG_11532	-	hypothetical protein
1533	 56.33	-2	1697561..1698460	+	299	148822724	-	TBFG_11533	-	hypothetical protein
1534	 59.48	-1	1698633..1699175	-	180	148822725	-	TBFG_11534	-	hypothetical protein
1535	 60.83	-1	1699182..1699781	-	199	148822726	-	TBFG_11535	-	hypothetical protein
1536	 54.65	-2	1699918..1700583	-	221	148822727	-	TBFG_11536	-	hypothetical protein
1537	 54.29	-2	1700580..1701080	-	166	148822728	-	TBFG_11537	-	hypothetical protein
1538	 51.58	-2	1701364..1702059	-	231	148822730	-	TBFG_11538	-	hypothetical protein
1539	 55.56	-2	1701993..1702496	+	167	148822729	-	TBFG_11539	-	hypothetical protein
1540	 62.89	0	1702732..1704531	-	599	148822732	-	TBFG_11540	-	hypothetical protein
1541	 58.95	-1	1704503..1704865	+	120	148822731	-	TBFG_11541	-	hypothetical protein
1542	 57.03	-2	1704849..1705730	+	293	148822733	-	TBFG_11542	-	hypothetical protein
1543	 68.59	0	1705932..1707230	+	432	148822734	-	TBFG_11543	-	hypothetical protein
1544	 61.19	-1	1707234..1707653	+	139	148822735	-	TBFG_11544	-	hypothetical protein
1545	 63.34	0	1707711..1708733	+	340	148822736	-	TBFG_11545	-	GDP-D-mannose dehydratase gmdA
1546	 67.60	0	1708730..1709698	+	322	148822737	-	TBFG_11546	-	nucleotide-sugar epimerase epiA
1547	 62.57	0	1709695..1710426	+	243	148822738	-	TBFG_11547	-	hypothetical protein
1548	 62.36	0	1710444..1711232	-	262	148822739	-	TBFG_11548	-	hypothetical protein
1549	 59.31	-1	1711267..1712163	-	298	148822740	-	TBFG_11549	-	hypothetical protein
1550	 66.37	0	1712166..1713176	-	336	148822741	-	TBFG_11550	-	sugar transferase
1551	 64.31	0	1713508..1714272	+	254	148822742	-	TBFG_11551	-	hypothetical protein
1552	 63.23	0	1714281..1715240	+	319	148822743	-	TBFG_11552	-	hypothetical protein
1553	 63.22	0	1715632..1716705	+	357	148822744	-	TBFG_11553	-	sugar transferase
1554	 59.99	-1	1716939..1718690	+	583	148822745	-	TBFG_11554	-	acyl-CoA synthetase
1555	 61.73	-1	1718809..1722249	-	1146	148822746	-	TBFG_11555	-	transmembrane transport protein mmpL12
1556	 63.89	0	1722290..1723333	+	347	148822747	-	TBFG_11556	-	methyltransferase
1557	 65.38	0	1723363..1724607	+	414	148822748	-	TBFG_11557	-	glycosyltransferase
1558	 62.34	0	1724654..1725439	+	261	148822749	-	TBFG_11558	-	rhamnosyl transferase wbbL2
1559	 65.18	0	1725417..1726697	-	426	148822750	-	TBFG_11559	-	glycosyltransferase
1560	 67.82	0	1726720..1733046	-	2108	148822751	-	TBFG_11560	-	polyketide synthase pks5
1561	 63.45	0	1733590..1734087	-	165	148822752	-	TBFG_11561	-	polyketide synthase associated protein papA4
1562	 61.94	-1	1734139..1735893	+	584	148822753	-	TBFG_11562	-	acyl-CoA synthetase
1563	 68.03	0	1736010..1737113	+	367	148822754	-	TBFG_11563	-	alcohol dehydrogenase adh
1564	 62.26	0	1737110..1737676	+	188	148822755	-	TBFG_11564	-	hypothetical protein
1565	 64.83	0	1737753..1738187	-	144	148822756	-	TBFG_11565	-	hypothetical protein
1566	 68.35	0	1738247..1739374	+	375	148822757	-	TBFG_11566	-	hypothetical protein
1567	 65.49	0	1739371..1740048	+	225	148822758	-	TBFG_11567	-	transcriptional regulator
1568	 68.78	0	1740613..1740849	+	78	148822759	-	TBFG_11568	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.