IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1408	 68.21	0	1556995..1557576	+	193	148822598	-	TBFG_11408	-	pyrimidine regulatory protein PyrR
1409	 67.81	0	1557573..1558532	+	319	148822600	pyrB	TBFG_11409	-	aspartate carbamoyltransferase catalytic subunit
1410	 69.68	+1	1558529..1559821	+	430	148822601	pyrC	TBFG_11410	-	dihydroorotase
1411	 67.87	0	1559818..1560315	+	165	148822602	-	TBFG_11411	-	hypothetical protein
1412	 67.73	0	1560312..1561442	+	376	148822603	-	TBFG_11412	-	carbamoyl phosphate synthase small subunit
1413	 67.00	0	1561442..1564789	+	1115	148822604	carB	TBFG_11413	-	carbamoyl phosphate synthase large subunit
1414	 72.97	+2	1564786..1565610	+	274	148822605	pyrF	TBFG_11414	-	orotidine 5'-phosphate decarboxylase
1415	 68.28	0	1565805..1566113	+	102	148822606	-	TBFG_11415	-	PE family protein
1416	 65.49	0	1566110..1567729	+	539	148822607	-	TBFG_11416	-	PPE family protein
1417	 63.00	0	1568035..1568607	+	190	148822608	-	TBFG_11417	-	integration host factor mihF
1418	 66.21	0	1568715..1569368	+	217	148822609	gmk	TBFG_11418	-	guanylate kinase
1419	 62.16	0	1569434..1569766	+	110	148822610	-	TBFG_11419	-	DNA-directed RNA polymerase subunit omega
1420	 67.78	0	1569785..1571038	+	417	148822611	-	TBFG_11420	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1421	 66.67	0	1571166..1572377	+	403	148822612	-	TBFG_11421	-	S-adenosylmethionine synthetase
1422	 64.23	0	1572450..1573925	-	491	148822613	-	TBFG_11422	-	monoxygenase
1423	 64.00	0	1573925..1575310	-	461	148822614	-	TBFG_11423	-	cytochrome P450 132 cyp132
1424	 63.57	0	1575388..1576422	+	344	148822615	-	TBFG_11424	-	transcriptional regulator
1425	 78.16	+2	1576468..1578198	-	576	148822616	-	TBFG_11425	-	PE-PGRS family protein
1426	 62.69	0	1578453..1578854	-	133	148822617	-	TBFG_11426	-	hypothetical protein
1427	 63.57	0	1578851..1579108	-	85	148822618	-	TBFG_11427	-	hypothetical protein
1428	 67.92	0	1579191..1580150	-	319	148822619	-	TBFG_11428	-	lipase lipH
1429	 67.39	0	1580175..1581137	-	320	148822621	-	TBFG_11429	-	lipase lipH
1430	 67.18	0	1581088..1581873	+	261	148822620	-	TBFG_11430	-	hypothetical protein
1431	 72.71	+2	1581954..1583921	+	655	148822622	-	TBFG_11431	-	primosome assembly protein PriA
1432	 65.70	0	1583939..1584763	-	274	148822623	-	TBFG_11432	-	methyltransferase
1433	 63.83	0	1584887..1585414	+	175	148822624	-	TBFG_11433	-	transcriptional regulator
1434	 65.33	0	1585486..1586310	-	274	148822625	-	TBFG_11434	-	methyltransferase
1435	 69.86	+1	1586507..1587445	+	312	148822626	fmt	TBFG_11435	-	methionyl-tRNA formyltransferase
1436	 70.96	+1	1587442..1588815	+	457	148822627	-	TBFG_11436	-	fmu protein (sun protein)
1437	 67.10	0	1588840..1589538	+	232	148822628	-	TBFG_11437	-	ribulose-phosphate 3-epimerase
1438	 67.94	0	1589535..1590554	+	339	148822629	-	TBFG_11438	-	bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase
1439	 65.51	0	1590551..1592107	-	518	148822630	-	TBFG_11439	-	aminoglycosides/tetracycline-transport integral membrane protein
1440	 65.12	0	1592113..1592823	-	236	148822631	-	TBFG_11440	-	lipoprotein lprG
1441	 65.51	0	1592908..1593513	+	201	148822632	-	TBFG_11441	-	riboflavin synthase subunit alpha
1442	 67.83	0	1593727..1594242	+	171	148822633	-	TBFG_11442	-	hypothetical protein
1443	 66.67	0	1594232..1594633	+	133	148822634	-	TBFG_11443	-	hypothetical protein
1444	 64.16	0	1594738..1596015	+	425	148822635	-	TBFG_11444	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1445	 67.49	0	1596012..1596494	+	160	148822636	ribH	TBFG_11445	-	riboflavin synthase subunit beta
1446	 66.67	0	1596491..1596955	+	154	148822637	-	TBFG_11446	-	hypothetical protein
1447	 66.08	0	1596980..1597666	+	228	148822638	-	TBFG_11447	-	lipoprotein lprH
1448	 63.29	0	1597846..1598319	+	157	148822639	-	TBFG_11448	-	hypothetical protein
1449	 65.43	0	1598383..1600323	+	646	148822640	uvrC	TBFG_11449	-	excinuclease ABC subunit C
1450	 64.46	0	1600320..1601225	+	301	148822641	-	TBFG_11450	-	hypothetical protein
1451	 68.71	0	1601222..1602250	+	342	148822642	-	TBFG_11451	-	hypothetical protein
1452	 68.81	0	1602247..1603224	+	325	148822643	-	TBFG_11452	-	transcriptional regulatory protein whiA
1453	 62.47	0	1603234..1603995	-	253	148822644	-	TBFG_11453	-	hypothetical protein
1454	 65.36	0	1603999..1605378	+	459	148822645	-	TBFG_11454	-	hypothetical protein
1455	 67.38	0	1605400..1606662	-	420	148822646	-	TBFG_11455	-	esterase lipO
1456	 66.42	0	1606662..1608269	-	535	148822647	-	TBFG_11456	-	acyl-CoA synthetase
1457	 63.65	0	1608273..1609100	-	275	148822648	-	TBFG_11457	-	hypothetical protein
1458	 65.25	0	1609219..1610487	+	422	148822649	-	TBFG_11458	-	hypothetical protein
1459	 64.02	0	1610727..1612313	+	528	148822650	-	TBFG_11459	-	PE family protein
1460	 62.32	0	1612424..1614193	+	589	148822651	-	TBFG_11460	-	hypothetical protein
1461	 69.97	+1	1614190..1615611	+	473	148822652	-	TBFG_11461	-	dehydrogenase
1462	 64.09	0	1615775..1616590	+	271	148822653	-	TBFG_11462	-	hypothetical protein
1463	 67.87	0	1616683..1617345	-	220	148822654	-	TBFG_11463	-	proline, glycine, valine-rich secreted protein
1464	 63.04	0	1617669..1618688	+	339	148822655	-	TBFG_11464	-	glyceraldehyde-3-phosphate dehydrogenase
1465	 64.57	0	1618691..1619929	+	412	148822656	pgk	TBFG_11465	-	phosphoglycerate kinase
1466	 64.12	0	1619926..1620711	+	261	148822657	tpiA	TBFG_11466	-	triosephosphate isomerase
1467	 62.44	0	1621323..1621748	-	141	148822658	-	TBFG_11467	-	hypothetical protein
1468	 59.83	-1	1622199..1622432	+	77	148822659	secG	TBFG_11468	-	preprotein translocase subunit SecG
1469	 76.02	+2	1622571..1624046	-	491	148822660	-	TBFG_11469	-	PE-PGRS family protein
1470	 67.23	0	1624153..1626453	+	766	148822661	-	TBFG_11470	-	molybdopterin oxidoreductase
1471	 65.64	0	1626569..1627054	-	161	148822662	-	TBFG_11471	-	hypothetical protein
1472	 63.26	0	1627649..1628059	-	136	148822663	-	TBFG_11472	-	hypothetical protein
1473	 67.88	0	1628076..1628819	-	247	148822664	-	TBFG_11473	-	6-phosphogluconolactonase
1474	 66.78	0	1628816..1629727	-	303	148822665	-	TBFG_11474	-	oxpP cycle protein opcA
1475	 65.89	0	1629780..1631324	-	514	148822666	-	TBFG_11475	-	glucose-6-phosphate 1-dehydrogenase
1476	 64.17	0	1631321..1632442	-	373	148822667	-	TBFG_11476	-	transaldolase
1477	 67.81	0	1632459..1634561	-	700	148822668	-	TBFG_11477	-	transketolase
1478	 78.39	+2	1635000..1639223	-	1407	148822669	-	TBFG_11478	-	PE-PGRS family protein
1479	 66.13	0	1639625..1640551	+	308	148822670	-	TBFG_11479	-	protoheme IX farnesyltransferase
1480	 77.51	+2	1640600..1642813	-	737	148822671	-	TBFG_11480	-	PE-PGRS family protein
1481	 63.82	0	1642932..1644230	+	432	148822672	-	TBFG_11481	-	transcriptional activator protein
1482	 67.17	0	1644258..1645244	-	328	148822673	-	TBFG_11482	-	quinone reductase qor (NADPH:quinone reductase) (zeta-crystallin protein)
1483	 66.78	0	1645264..1646127	+	287	148822674	-	TBFG_11483	-	hypothetical protein
1484	 68.70	0	1646077..1647009	-	310	148822675	-	TBFG_11484	-	antibiotic ABC transporter membrane protein
1485	 66.16	0	1647121..1647906	-	261	148822676	-	TBFG_11485	-	antibiotic ABC transporter membrane protein
1486	 67.73	0	1647903..1648844	-	313	148822677	-	TBFG_11486	-	antibiotic ABC transporter ATP-binding protein
1487	 67.00	0	1649000..1650775	-	591	148822678	-	TBFG_11487	-	integral membrane protein
1488	 69.76	+1	1650823..1651629	+	268	148822679	-	TBFG_11488	-	transcriptional regulator
1489	 61.71	-1	1651626..1654166	+	846	148822680	-	TBFG_11489	-	hypothetical protein
1490	 67.67	0	1654163..1655356	+	397	148822681	-	TBFG_11490	-	hypothetical protein
1491	 65.17	0	1655353..1656153	+	266	148822682	-	TBFG_11491	-	ATP-binding protein ABC transporter
1492	 67.86	0	1656155..1657408	+	417	148822683	-	TBFG_11492	-	cysteine desulfurase csd
1493	 64.01	0	1657405..1657893	+	162	148822684	-	TBFG_11493	-	nitrogen fixation-like protein
1494	 65.80	0	1657868..1658215	+	115	148822685	-	TBFG_11494	-	hypothetical protein
1495	 63.77	0	1658310..1660139	-	609	148822686	-	TBFG_11495	-	acyl-CoA dehydrogenase fadE15
1496	 75.27	+2	1660246..1661373	-	375	148822687	-	TBFG_11496	-	PE-PGRS family protein
1497	 66.77	0	1661600..1663573	+	657	148822688	-	TBFG_11497	-	cation transporter ATPase D ctpD
1498	 57.33	-2	1663617..1663991	+	124	148822689	-	TBFG_11498	-	thioredoxin trxA
1499	 63.44	0	1664007..1664378	+	123	148822690	-	TBFG_11499	-	thioredoxin trxB1
1500	 64.92	0	1664400..1665257	+	285	148822691	-	TBFG_11500	-	enoyl-CoA hydratase
1501	 67.10	0	1665293..1666921	+	542	148822692	-	TBFG_11501	-	macrolide ABC transporter ATP-binding protein
1502	 67.71	0	1667018..1667209	+	63	148822693	-	TBFG_11502	-	transcriptional regulator
1503	 66.49	0	1667278..1667841	-	187	148822694	-	TBFG_11503	-	transcriptional regulator
1504	 62.99	0	1667852..1670683	-	943	148822695	-	TBFG_11504	-	aconitate hydratase
1505	 63.46	0	1670841..1671401	+	186	148822696	-	TBFG_11505	-	hypothetical protein
1506	 67.02	0	1671627..1673045	+	472	148822697	-	TBFG_11506	-	invasion protein
1507	 66.27	0	1673020..1673781	+	253	148822698	-	TBFG_11507	-	invasion protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.