IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1372	 62.81	0	1513882..1514244	-	120	148822563	-	TBFG_11372	-	hypothetical protein
1373	 62.99	0	1514241..1514621	-	126	148822564	-	TBFG_11373	-	lipoprotein lprD
1374	 59.81	-1	1514666..1514986	+	106	148822565	-	TBFG_11374	-	acyl carrier protein
1375	 67.24	0	1514979..1516544	+	521	148822566	-	TBFG_11375	-	acyl-CoA synthetase
1376	 64.94	0	1516544..1517704	+	386	148822567	-	TBFG_11376	-	acyl-CoA dehydrogenase fadE14
1377	 62.56	0	1517671..1518303	-	210	148822568	-	TBFG_11377	-	hypothetical protein
1378	 66.28	0	1518745..1521324	+	859	148822569	-	TBFG_11378	-	drug ABC transporter ATP-binding protein
1379	 67.13	0	1521321..1523060	+	579	148822570	-	TBFG_11379	-	drug ABC transporter ATP-binding protein
1380	 60.75	-1	1523189..1523932	+	247	148822571	fabG	TBFG_11380	-	3-ketoacyl-(acyl-carrier-protein) reductase
1381	 59.09	-1	1523929..1524258	+	109	148822572	-	TBFG_11381	-	hypothetical protein
1382	 62.10	0	1524461..1524832	+	123	148822573	-	TBFG_11382	-	hypothetical protein
1383	 62.60	0	1524898..1525683	-	261	148822574	-	TBFG_11383	-	transcriptional regulator
1384	 61.59	-1	1525703..1527574	-	623	148822575	-	TBFG_11384	-	hypothetical protein
1385	 61.64	-1	1527583..1529730	-	715	148822576	-	TBFG_11385	-	hypothetical protein
1386	 57.95	-2	1529727..1530518	-	263	148822577	-	TBFG_11386	-	hypothetical protein
1387	 62.34	0	1530991..1531914	-	307	148822578	-	TBFG_11387	-	hypothetical protein
1388	 62.56	0	1532310..1533209	+	299	148822579	-	TBFG_11388	-	transcriptional regulator
1389	 62.35	0	1533127..1535790	+	887	148822580	-	TBFG_11389	-	transcriptional regulator
1390	 62.15	0	1535872..1536624	+	250	148822581	-	TBFG_11390	-	transcriptional regulator
1391	 63.64	0	1537047..1538069	+	340	148822582	-	TBFG_11391	-	oxidoreductase
1392	 67.84	0	1538142..1539332	-	396	148822583	-	TBFG_11392	-	PPE family protein
1393	 61.09	-1	1539647..1540309	-	220	148822584	-	TBFG_11393	-	hypothetical protein
1394	 63.74	0	1540306..1541091	-	261	148822585	-	TBFG_11394	-	hypothetical protein
1395	 65.39	0	1541382..1543343	-	653	148822586	-	TBFG_11395	-	hypothetical protein
1396	 65.12	0	1543482..1543868	-	128	148822587	-	TBFG_11396	-	anti-anti-sigma factor rsfA
1397	 62.41	0	1544089..1544910	+	273	148822588	-	TBFG_11397	-	hypothetical protein
1398	 66.25	0	1545211..1546416	-	401	148822589	-	TBFG_11398	-	hypothetical protein
1399	 64.12	0	1546719..1547504	+	261	148822590	-	TBFG_11399	-	lipoprotein lprF
1400	 60.54	-1	1547700..1549169	+	489	148822591	-	TBFG_11400	-	hypothetical protein
1401	 62.61	0	1549166..1550347	+	393	148822592	-	TBFG_11401	-	hypothetical protein
1402	 64.22	0	1550353..1551333	+	326	148822593	-	TBFG_11402	-	glycolipid sulfotransferase
1403	 60.57	-1	1551413..1551871	-	152	148822594	-	TBFG_11403	-	hypothetical protein
1404	 66.44	0	1552173..1553492	+	439	148822595	-	TBFG_11404	-	hypothetical protein
1405	 66.73	0	1553489..1554982	+	497	148822596	-	TBFG_11405	-	hypothetical protein
1406	 66.67	0	1554920..1555558	-	212	148822597	-	TBFG_11406	-	transferase
1407	 69.61	+1	1555569..1556996	-	475	148822599	-	TBFG_11407	-	hypothetical protein
1408	 68.21	0	1556995..1557576	+	193	148822598	-	TBFG_11408	-	pyrimidine regulatory protein PyrR
1409	 67.81	0	1557573..1558532	+	319	148822600	pyrB	TBFG_11409	-	aspartate carbamoyltransferase catalytic subunit
1410	 69.68	+1	1558529..1559821	+	430	148822601	pyrC	TBFG_11410	-	dihydroorotase
1411	 67.87	0	1559818..1560315	+	165	148822602	-	TBFG_11411	-	hypothetical protein
1412	 67.73	0	1560312..1561442	+	376	148822603	-	TBFG_11412	-	carbamoyl phosphate synthase small subunit
1413	 67.00	0	1561442..1564789	+	1115	148822604	carB	TBFG_11413	-	carbamoyl phosphate synthase large subunit
1414	 72.97	+2	1564786..1565610	+	274	148822605	pyrF	TBFG_11414	-	orotidine 5'-phosphate decarboxylase
1415	 68.28	0	1565805..1566113	+	102	148822606	-	TBFG_11415	-	PE family protein
1416	 65.49	0	1566110..1567729	+	539	148822607	-	TBFG_11416	-	PPE family protein
1417	 63.00	0	1568035..1568607	+	190	148822608	-	TBFG_11417	-	integration host factor mihF
1418	 66.21	0	1568715..1569368	+	217	148822609	gmk	TBFG_11418	-	guanylate kinase
1419	 62.16	0	1569434..1569766	+	110	148822610	-	TBFG_11419	-	DNA-directed RNA polymerase subunit omega
1420	 67.78	0	1569785..1571038	+	417	148822611	-	TBFG_11420	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1421	 66.67	0	1571166..1572377	+	403	148822612	-	TBFG_11421	-	S-adenosylmethionine synthetase
1422	 64.23	0	1572450..1573925	-	491	148822613	-	TBFG_11422	-	monoxygenase
1423	 64.00	0	1573925..1575310	-	461	148822614	-	TBFG_11423	-	cytochrome P450 132 cyp132
1424	 63.57	0	1575388..1576422	+	344	148822615	-	TBFG_11424	-	transcriptional regulator
1425	 78.16	+2	1576468..1578198	-	576	148822616	-	TBFG_11425	-	PE-PGRS family protein
1426	 62.69	0	1578453..1578854	-	133	148822617	-	TBFG_11426	-	hypothetical protein
1427	 63.57	0	1578851..1579108	-	85	148822618	-	TBFG_11427	-	hypothetical protein
1428	 67.92	0	1579191..1580150	-	319	148822619	-	TBFG_11428	-	lipase lipH
1429	 67.39	0	1580175..1581137	-	320	148822621	-	TBFG_11429	-	lipase lipH
1430	 67.18	0	1581088..1581873	+	261	148822620	-	TBFG_11430	-	hypothetical protein
1431	 72.71	+2	1581954..1583921	+	655	148822622	-	TBFG_11431	-	primosome assembly protein PriA
1432	 65.70	0	1583939..1584763	-	274	148822623	-	TBFG_11432	-	methyltransferase
1433	 63.83	0	1584887..1585414	+	175	148822624	-	TBFG_11433	-	transcriptional regulator
1434	 65.33	0	1585486..1586310	-	274	148822625	-	TBFG_11434	-	methyltransferase
1435	 69.86	+1	1586507..1587445	+	312	148822626	fmt	TBFG_11435	-	methionyl-tRNA formyltransferase
1436	 70.96	+1	1587442..1588815	+	457	148822627	-	TBFG_11436	-	fmu protein (sun protein)
1437	 67.10	0	1588840..1589538	+	232	148822628	-	TBFG_11437	-	ribulose-phosphate 3-epimerase
1438	 67.94	0	1589535..1590554	+	339	148822629	-	TBFG_11438	-	bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase
1439	 65.51	0	1590551..1592107	-	518	148822630	-	TBFG_11439	-	aminoglycosides/tetracycline-transport integral membrane protein
1440	 65.12	0	1592113..1592823	-	236	148822631	-	TBFG_11440	-	lipoprotein lprG
1441	 65.51	0	1592908..1593513	+	201	148822632	-	TBFG_11441	-	riboflavin synthase subunit alpha
1442	 67.83	0	1593727..1594242	+	171	148822633	-	TBFG_11442	-	hypothetical protein
1443	 66.67	0	1594232..1594633	+	133	148822634	-	TBFG_11443	-	hypothetical protein
1444	 64.16	0	1594738..1596015	+	425	148822635	-	TBFG_11444	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1445	 67.49	0	1596012..1596494	+	160	148822636	ribH	TBFG_11445	-	riboflavin synthase subunit beta
1446	 66.67	0	1596491..1596955	+	154	148822637	-	TBFG_11446	-	hypothetical protein
1447	 66.08	0	1596980..1597666	+	228	148822638	-	TBFG_11447	-	lipoprotein lprH
1448	 63.29	0	1597846..1598319	+	157	148822639	-	TBFG_11448	-	hypothetical protein
1449	 65.43	0	1598383..1600323	+	646	148822640	uvrC	TBFG_11449	-	excinuclease ABC subunit C
1450	 64.46	0	1600320..1601225	+	301	148822641	-	TBFG_11450	-	hypothetical protein
1451	 68.71	0	1601222..1602250	+	342	148822642	-	TBFG_11451	-	hypothetical protein
1452	 68.81	0	1602247..1603224	+	325	148822643	-	TBFG_11452	-	transcriptional regulatory protein whiA
1453	 62.47	0	1603234..1603995	-	253	148822644	-	TBFG_11453	-	hypothetical protein
1454	 65.36	0	1603999..1605378	+	459	148822645	-	TBFG_11454	-	hypothetical protein
1455	 67.38	0	1605400..1606662	-	420	148822646	-	TBFG_11455	-	esterase lipO
1456	 66.42	0	1606662..1608269	-	535	148822647	-	TBFG_11456	-	acyl-CoA synthetase
1457	 63.65	0	1608273..1609100	-	275	148822648	-	TBFG_11457	-	hypothetical protein
1458	 65.25	0	1609219..1610487	+	422	148822649	-	TBFG_11458	-	hypothetical protein
1459	 64.02	0	1610727..1612313	+	528	148822650	-	TBFG_11459	-	PE family protein
1460	 62.32	0	1612424..1614193	+	589	148822651	-	TBFG_11460	-	hypothetical protein
1461	 69.97	+1	1614190..1615611	+	473	148822652	-	TBFG_11461	-	dehydrogenase
1462	 64.09	0	1615775..1616590	+	271	148822653	-	TBFG_11462	-	hypothetical protein
1463	 67.87	0	1616683..1617345	-	220	148822654	-	TBFG_11463	-	proline, glycine, valine-rich secreted protein
1464	 63.04	0	1617669..1618688	+	339	148822655	-	TBFG_11464	-	glyceraldehyde-3-phosphate dehydrogenase
1465	 64.57	0	1618691..1619929	+	412	148822656	pgk	TBFG_11465	-	phosphoglycerate kinase
1466	 64.12	0	1619926..1620711	+	261	148822657	tpiA	TBFG_11466	-	triosephosphate isomerase
1467	 62.44	0	1621323..1621748	-	141	148822658	-	TBFG_11467	-	hypothetical protein
1468	 59.83	-1	1622199..1622432	+	77	148822659	secG	TBFG_11468	-	preprotein translocase subunit SecG
1469	 76.02	+2	1622571..1624046	-	491	148822660	-	TBFG_11469	-	PE-PGRS family protein
1470	 67.23	0	1624153..1626453	+	766	148822661	-	TBFG_11470	-	molybdopterin oxidoreductase
1471	 65.64	0	1626569..1627054	-	161	148822662	-	TBFG_11471	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.