IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1306	 65.15	0	1435432..1437207	-	591	148822497	-	TBFG_11306	-	periplasmic oligopeptide-binding lipoprotein oppA
1307	 66.23	0	1437200..1439038	-	612	148822498	-	TBFG_11307	-	oligopeptide-transport ATP-binding protein ABC transporter oppD
1308	 61.64	-1	1439035..1439910	-	291	148822499	-	TBFG_11308	-	oligopeptide-transport integral membrane protein ABC transporter oppC
1309	 64.83	0	1439907..1440884	-	325	148822500	-	TBFG_11309	-	oligopeptide-transport integral membrane protein ABC transporter oppB
1310	 63.82	0	1441091..1441582	+	163	148822501	-	TBFG_11310	-	hypothetical protein
1311	 64.46	0	1441676..1442674	+	332	148822502	-	TBFG_11311	-	sulfate adenylyltransferase subunit 2
1312	 63.25	0	1442674..1444518	+	614	148822503	-	TBFG_11312	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
1313	 67.90	0	1444572..1445057	+	161	148822504	-	TBFG_11313	-	hypothetical protein
1314	 64.99	0	1445115..1446485	+	456	148822505	-	TBFG_11314	-	hypothetical protein
1315	 60.03	-1	1446534..1447166	+	210	148822506	-	TBFG_11315	-	hypothetical protein
1316	 65.26	0	1447249..1448814	-	521	148822507	-	TBFG_11316	-	hypothetical protein
1317	 64.13	0	1448825..1449139	+	104	148822508	-	TBFG_11317	-	hypothetical protein
1318	 68.75	0	1449266..1449601	-	111	148822509	-	TBFG_11318	-	hypothetical protein
1319	 65.28	0	1450146..1451798	+	550	148822510	argS	TBFG_11319	-	arginyl-tRNA synthetase
1320	 63.99	0	1451795..1453138	+	447	148822511	-	TBFG_11320	-	diaminopimelate decarboxylase lysA (dap decarboxylase)
1321	 65.38	0	1453142..1454467	+	441	148822512	-	TBFG_11321	-	homoserine dehydrogenase
1322	 65.65	0	1454464..1455546	+	360	148822513	-	TBFG_11322	-	threonine synthase
1323	 63.72	0	1455764..1456714	+	316	148822514	-	TBFG_11323	-	homoserine kinase
1324	 65.51	0	1456971..1458779	+	602	148822515	-	TBFG_11324	-	transcription termination factor Rho
1325	 57.61	-2	1458930..1459172	+	80	148822516	rpmE	TBFG_11325	-	50S ribosomal protein L31
1326	 64.15	0	1459262..1460335	+	357	148822517	prfA	TBFG_11326	-	peptide chain release factor 1
1327	 65.64	0	1460332..1461309	+	325	148822518	-	TBFG_11327	-	hypothetical protein
1328	 66.82	0	1461325..1461978	+	217	148822519	-	TBFG_11328	-	hypothetical protein
1329	 65.10	0	1462062..1463276	+	404	148822520	-	TBFG_11329	-	undecapaprenyl-phosphate alpha-N-acetylglucosaminyltransferase rfe
1330	 61.11	-1	1463533..1464018	+	161	148822521	-	TBFG_11330	-	hypothetical protein
1331	 58.03	-2	1464011..1464763	+	250	148822522	-	TBFG_11331	-	F0F1 ATP synthase subunit A
1332	 60.76	-1	1464770..1465057	+	95	148822523	-	TBFG_11332	-	F0F1 ATP synthase subunit C
1333	 61.63	-1	1465088..1465603	+	171	148822524	-	TBFG_11333	-	F0F1 ATP synthase subunit B
1334	 64.28	0	1465610..1466950	+	446	148822525	-	TBFG_11334	-	F0F1 ATP synthase subunit delta
1335	 62.85	0	1466995..1468644	+	549	148822526	-	TBFG_11335	-	F0F1 ATP synthase subunit alpha
1336	 62.75	0	1468651..1469568	+	305	148822527	-	TBFG_11336	-	F0F1 ATP synthase subunit gamma
1337	 63.52	0	1469608..1471068	+	486	148822528	-	TBFG_11337	-	F0F1 ATP synthase subunit beta
1338	 64.21	0	1471082..1471447	+	121	148822529	atpC	TBFG_11338	-	F0F1 ATP synthase subunit epsilon
1339	 64.41	0	1471455..1471898	+	147	148822530	-	TBFG_11339	-	hypothetical protein
1340	 67.12	0	1471938..1473272	-	444	148822531	-	TBFG_11340	-	transposase
1341	 63.57	0	1473438..1474019	-	193	148822532	-	TBFG_11341	-	hypothetical protein
1342	 64.68	0	1474088..1475344	+	418	148822533	-	TBFG_11342	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1343	 61.85	-1	1480901..1481398	-	165	148822534	-	TBFG_11343	-	methylated-DNA-protein-cysteine methyltransferase ogt
1344	 68.34	0	1481395..1482885	-	496	148822535	-	TBFG_11344	-	Ada regulatory protein alkA
1345	 66.05	0	1482966..1484591	-	541	148822536	-	TBFG_11345	-	adenylate cyclase
1346	 67.43	0	1484661..1485314	-	217	148822537	-	TBFG_11346	-	adenylate cyclase
1347	 65.75	0	1485350..1485676	+	108	148822538	-	TBFG_11347	-	transposase
1348	 63.92	0	1485775..1486611	+	278	148822539	-	TBFG_11348	-	transposase
1349	 63.87	0	1486616..1487617	-	333	148822540	-	TBFG_11349	-	adenylate cyclase
1350	 64.10	0	1487624..1489300	-	558	148822541	-	TBFG_11350	-	adenylate cyclase
1351	 61.91	-1	1489313..1491016	-	567	148822542	-	TBFG_11351	-	adenylate cyclase
1352	 64.46	0	1491078..1491758	+	226	148822543	-	TBFG_11352	-	hypothetical protein
1353	 67.34	0	1491781..1492077	+	98	148822544	-	TBFG_11353	-	hypothetical protein
1354	 63.38	0	1492112..1492567	-	151	148822545	-	TBFG_11354	-	hypothetical protein
1355	 65.56	0	1492661..1493830	+	389	148822546	-	TBFG_11355	-	acetyl-CoA acetyltransferase
1356	 65.57	0	1493960..1494874	+	304	148822547	-	TBFG_11356	-	thioredoxin
1357	 77.65	+2	1494952..1496763	-	603	148822548	-	TBFG_11357	-	PE-PGRS family protein
1358	 64.03	0	1496915..1499110	-	731	148822549	-	TBFG_11358	-	glycogen branching enzyme
1359	 64.43	0	1499118..1501223	-	701	148822550	-	TBFG_11359	-	glucanase glgE
1360	 65.82	0	1501362..1503953	+	863	148822551	-	TBFG_11360	-	glycogen phosphorylase glgP
1361	 67.32	0	1503993..1505987	-	664	148822552	-	TBFG_11361	-	ATP-dependent helicase dinG
1362	 68.82	0	1506011..1507357	-	448	148822553	-	TBFG_11362	-	nicotinate phosphoribosyltransferase
1363	 61.44	-1	1507459..1507764	+	101	148822554	clpS	TBFG_11363	-	ATP-dependent Clp protease adaptor protein ClpS
1364	 63.32	0	1507724..1508380	+	218	148822555	-	TBFG_11364	-	transcriptional regulator
1365	 69.95	+1	1508397..1509431	+	344	148822556	-	TBFG_11365	-	hydrolase
1366	 68.42	0	1509494..1510063	+	189	148822557	-	TBFG_11366	-	cysteine synthase B cysM
1367	 62.93	0	1510054..1510776	+	240	148822558	-	TBFG_11367	-	hypothetical protein
1368	 66.05	0	1510773..1511588	+	271	148822559	-	TBFG_11368	-	glutamate racemase
1369	 64.11	0	1511615..1512436	+	273	148822560	-	TBFG_11369	-	hypothetical protein
1370	 65.26	0	1512453..1513232	+	259	148822561	rph	TBFG_11370	-	ribonuclease PH
1371	 68.62	0	1513271..1513885	+	204	148822562	-	TBFG_11371	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1372	 62.81	0	1513882..1514244	-	120	148822563	-	TBFG_11372	-	hypothetical protein
1373	 62.99	0	1514241..1514621	-	126	148822564	-	TBFG_11373	-	lipoprotein lprD
1374	 59.81	-1	1514666..1514986	+	106	148822565	-	TBFG_11374	-	acyl carrier protein
1375	 67.24	0	1514979..1516544	+	521	148822566	-	TBFG_11375	-	acyl-CoA synthetase
1376	 64.94	0	1516544..1517704	+	386	148822567	-	TBFG_11376	-	acyl-CoA dehydrogenase fadE14
1377	 62.56	0	1517671..1518303	-	210	148822568	-	TBFG_11377	-	hypothetical protein
1378	 66.28	0	1518745..1521324	+	859	148822569	-	TBFG_11378	-	drug ABC transporter ATP-binding protein
1379	 67.13	0	1521321..1523060	+	579	148822570	-	TBFG_11379	-	drug ABC transporter ATP-binding protein
1380	 60.75	-1	1523189..1523932	+	247	148822571	fabG	TBFG_11380	-	3-ketoacyl-(acyl-carrier-protein) reductase
1381	 59.09	-1	1523929..1524258	+	109	148822572	-	TBFG_11381	-	hypothetical protein
1382	 62.10	0	1524461..1524832	+	123	148822573	-	TBFG_11382	-	hypothetical protein
1383	 62.60	0	1524898..1525683	-	261	148822574	-	TBFG_11383	-	transcriptional regulator
1384	 61.59	-1	1525703..1527574	-	623	148822575	-	TBFG_11384	-	hypothetical protein
1385	 61.64	-1	1527583..1529730	-	715	148822576	-	TBFG_11385	-	hypothetical protein
1386	 57.95	-2	1529727..1530518	-	263	148822577	-	TBFG_11386	-	hypothetical protein
1387	 62.34	0	1530991..1531914	-	307	148822578	-	TBFG_11387	-	hypothetical protein
1388	 62.56	0	1532310..1533209	+	299	148822579	-	TBFG_11388	-	transcriptional regulator
1389	 62.35	0	1533127..1535790	+	887	148822580	-	TBFG_11389	-	transcriptional regulator
1390	 62.15	0	1535872..1536624	+	250	148822581	-	TBFG_11390	-	transcriptional regulator
1391	 63.64	0	1537047..1538069	+	340	148822582	-	TBFG_11391	-	oxidoreductase
1392	 67.84	0	1538142..1539332	-	396	148822583	-	TBFG_11392	-	PPE family protein
1393	 61.09	-1	1539647..1540309	-	220	148822584	-	TBFG_11393	-	hypothetical protein
1394	 63.74	0	1540306..1541091	-	261	148822585	-	TBFG_11394	-	hypothetical protein
1395	 65.39	0	1541382..1543343	-	653	148822586	-	TBFG_11395	-	hypothetical protein
1396	 65.12	0	1543482..1543868	-	128	148822587	-	TBFG_11396	-	anti-anti-sigma factor rsfA
1397	 62.41	0	1544089..1544910	+	273	148822588	-	TBFG_11397	-	hypothetical protein
1398	 66.25	0	1545211..1546416	-	401	148822589	-	TBFG_11398	-	hypothetical protein
1399	 64.12	0	1546719..1547504	+	261	148822590	-	TBFG_11399	-	lipoprotein lprF
1400	 60.54	-1	1547700..1549169	+	489	148822591	-	TBFG_11400	-	hypothetical protein
1401	 62.61	0	1549166..1550347	+	393	148822592	-	TBFG_11401	-	hypothetical protein
1402	 64.22	0	1550353..1551333	+	326	148822593	-	TBFG_11402	-	glycolipid sulfotransferase
1403	 60.57	-1	1551413..1551871	-	152	148822594	-	TBFG_11403	-	hypothetical protein
1404	 66.44	0	1552173..1553492	+	439	148822595	-	TBFG_11404	-	hypothetical protein
1405	 66.73	0	1553489..1554982	+	497	148822596	-	TBFG_11405	-	hypothetical protein
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.