IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1277	 67.40	0	1399588..1403007	-	1139	148822468	-	TBFG_11277	-	hypothetical protein
1278	 66.67	0	1403063..1403671	-	202	148822469	-	TBFG_11278	-	lipoprotein lprE
1279	 64.18	0	1403737..1405428	+	563	148822470	-	TBFG_11279	-	cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
1280	 63.80	0	1405425..1406576	+	383	148822471	-	TBFG_11280	-	acyltransferase
1281	 67.00	0	1406545..1407153	-	202	148822472	-	TBFG_11281	-	transcriptional regulator
1282	 67.32	0	1407153..1408370	-	405	148822473	-	TBFG_11282	-	cytochrome P450 130 cyp130
1283	 67.84	0	1408484..1409851	-	455	148822474	-	TBFG_11283	-	oxidoreductase
1284	 67.14	0	1409848..1411107	-	419	148822476	-	TBFG_11284	-	integral membrane transport protein
1285	 68.44	0	1411106..1412005	+	299	148822475	-	TBFG_11285	-	hypothetical protein
1286	 61.04	-1	1412007..1413125	+	372	148822477	-	TBFG_11286	-	hypothetical protein
1287	 63.56	0	1413251..1413700	-	149	148822478	-	TBFG_11287	-	hypothetical protein
1288	 67.13	0	1413705..1414139	-	144	148822479	-	TBFG_11288	-	HIT family protein
1289	 68.03	0	1414198..1415586	+	462	148822480	-	TBFG_11289	-	amidase
1290	 68.43	0	1415661..1416854	+	397	148822481	-	TBFG_11290	-	adenylyl cyclase (ATP pyrophosphate-lyase)
1291	 63.58	0	1417027..1417707	+	226	148822482	-	TBFG_11291	-	hypothetical protein
1292	 66.83	0	1417727..1419607	-	626	148822483	-	TBFG_11292	-	transmembrane serine/threonine-protein kinase H pknH
1293	 65.04	0	1419948..1421114	-	388	148822484	-	TBFG_11293	-	transcriptional regulatory protein embR
1294	 66.52	0	1421425..1422123	-	232	148822485	-	TBFG_11294	-	hypothetical protein
1295	 66.67	0	1422346..1422720	-	124	148822486	-	TBFG_11295	-	hypothetical protein
1296	 62.45	0	1422781..1423515	-	244	148822487	-	TBFG_11296	-	lipoprotein lprA
1297	 62.87	0	1423728..1424069	-	113	148822488	-	TBFG_11297	-	hypothetical protein
1298	 65.03	0	1424177..1426072	-	631	148822489	-	TBFG_11298	-	drug ABC transporter ATP-binding protein
1299	 64.32	0	1426069..1427817	-	582	148822490	-	TBFG_11299	-	drug ABC transporter ATP-binding protein
1300	 62.54	0	1427964..1428521	+	185	148822491	-	TBFG_11300	-	lipoprotein lprB
1301	 65.56	0	1428518..1429060	+	180	148822492	-	TBFG_11301	-	lipoprotein lprC
1302	 69.23	+1	1429205..1429711	-	168	148822493	-	TBFG_11302	-	hypothetical protein
1303	 66.59	0	1429931..1431184	+	417	148822494	-	TBFG_11303	-	hypothetical protein
1304	 68.87	+1	1431181..1433808	+	875	148822495	-	TBFG_11304	-	hypothetical protein
1305	 65.28	0	1433829..1435415	+	528	148822496	-	TBFG_11305	-	dehydrogenase FAD flavoprotein GMC oxidoreductase
1306	 65.15	0	1435432..1437207	-	591	148822497	-	TBFG_11306	-	periplasmic oligopeptide-binding lipoprotein oppA
1307	 66.23	0	1437200..1439038	-	612	148822498	-	TBFG_11307	-	oligopeptide-transport ATP-binding protein ABC transporter oppD
1308	 61.64	-1	1439035..1439910	-	291	148822499	-	TBFG_11308	-	oligopeptide-transport integral membrane protein ABC transporter oppC
1309	 64.83	0	1439907..1440884	-	325	148822500	-	TBFG_11309	-	oligopeptide-transport integral membrane protein ABC transporter oppB
1310	 63.82	0	1441091..1441582	+	163	148822501	-	TBFG_11310	-	hypothetical protein
1311	 64.46	0	1441676..1442674	+	332	148822502	-	TBFG_11311	-	sulfate adenylyltransferase subunit 2
1312	 63.25	0	1442674..1444518	+	614	148822503	-	TBFG_11312	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
1313	 67.90	0	1444572..1445057	+	161	148822504	-	TBFG_11313	-	hypothetical protein
1314	 64.99	0	1445115..1446485	+	456	148822505	-	TBFG_11314	-	hypothetical protein
1315	 60.03	-1	1446534..1447166	+	210	148822506	-	TBFG_11315	-	hypothetical protein
1316	 65.26	0	1447249..1448814	-	521	148822507	-	TBFG_11316	-	hypothetical protein
1317	 64.13	0	1448825..1449139	+	104	148822508	-	TBFG_11317	-	hypothetical protein
1318	 68.75	0	1449266..1449601	-	111	148822509	-	TBFG_11318	-	hypothetical protein
1319	 65.28	0	1450146..1451798	+	550	148822510	argS	TBFG_11319	-	arginyl-tRNA synthetase
1320	 63.99	0	1451795..1453138	+	447	148822511	-	TBFG_11320	-	diaminopimelate decarboxylase lysA (dap decarboxylase)
1321	 65.38	0	1453142..1454467	+	441	148822512	-	TBFG_11321	-	homoserine dehydrogenase
1322	 65.65	0	1454464..1455546	+	360	148822513	-	TBFG_11322	-	threonine synthase
1323	 63.72	0	1455764..1456714	+	316	148822514	-	TBFG_11323	-	homoserine kinase
1324	 65.51	0	1456971..1458779	+	602	148822515	-	TBFG_11324	-	transcription termination factor Rho
1325	 57.61	-2	1458930..1459172	+	80	148822516	rpmE	TBFG_11325	-	50S ribosomal protein L31
1326	 64.15	0	1459262..1460335	+	357	148822517	prfA	TBFG_11326	-	peptide chain release factor 1
1327	 65.64	0	1460332..1461309	+	325	148822518	-	TBFG_11327	-	hypothetical protein
1328	 66.82	0	1461325..1461978	+	217	148822519	-	TBFG_11328	-	hypothetical protein
1329	 65.10	0	1462062..1463276	+	404	148822520	-	TBFG_11329	-	undecapaprenyl-phosphate alpha-N-acetylglucosaminyltransferase rfe
1330	 61.11	-1	1463533..1464018	+	161	148822521	-	TBFG_11330	-	hypothetical protein
1331	 58.03	-2	1464011..1464763	+	250	148822522	-	TBFG_11331	-	F0F1 ATP synthase subunit A
1332	 60.76	-1	1464770..1465057	+	95	148822523	-	TBFG_11332	-	F0F1 ATP synthase subunit C
1333	 61.63	-1	1465088..1465603	+	171	148822524	-	TBFG_11333	-	F0F1 ATP synthase subunit B
1334	 64.28	0	1465610..1466950	+	446	148822525	-	TBFG_11334	-	F0F1 ATP synthase subunit delta
1335	 62.85	0	1466995..1468644	+	549	148822526	-	TBFG_11335	-	F0F1 ATP synthase subunit alpha
1336	 62.75	0	1468651..1469568	+	305	148822527	-	TBFG_11336	-	F0F1 ATP synthase subunit gamma
1337	 63.52	0	1469608..1471068	+	486	148822528	-	TBFG_11337	-	F0F1 ATP synthase subunit beta
1338	 64.21	0	1471082..1471447	+	121	148822529	atpC	TBFG_11338	-	F0F1 ATP synthase subunit epsilon
1339	 64.41	0	1471455..1471898	+	147	148822530	-	TBFG_11339	-	hypothetical protein
1340	 67.12	0	1471938..1473272	-	444	148822531	-	TBFG_11340	-	transposase
1341	 63.57	0	1473438..1474019	-	193	148822532	-	TBFG_11341	-	hypothetical protein
1342	 64.68	0	1474088..1475344	+	418	148822533	-	TBFG_11342	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1343	 61.85	-1	1480901..1481398	-	165	148822534	-	TBFG_11343	-	methylated-DNA-protein-cysteine methyltransferase ogt
1344	 68.34	0	1481395..1482885	-	496	148822535	-	TBFG_11344	-	Ada regulatory protein alkA
1345	 66.05	0	1482966..1484591	-	541	148822536	-	TBFG_11345	-	adenylate cyclase
1346	 67.43	0	1484661..1485314	-	217	148822537	-	TBFG_11346	-	adenylate cyclase
1347	 65.75	0	1485350..1485676	+	108	148822538	-	TBFG_11347	-	transposase
1348	 63.92	0	1485775..1486611	+	278	148822539	-	TBFG_11348	-	transposase
1349	 63.87	0	1486616..1487617	-	333	148822540	-	TBFG_11349	-	adenylate cyclase
1350	 64.10	0	1487624..1489300	-	558	148822541	-	TBFG_11350	-	adenylate cyclase
1351	 61.91	-1	1489313..1491016	-	567	148822542	-	TBFG_11351	-	adenylate cyclase
1352	 64.46	0	1491078..1491758	+	226	148822543	-	TBFG_11352	-	hypothetical protein
1353	 67.34	0	1491781..1492077	+	98	148822544	-	TBFG_11353	-	hypothetical protein
1354	 63.38	0	1492112..1492567	-	151	148822545	-	TBFG_11354	-	hypothetical protein
1355	 65.56	0	1492661..1493830	+	389	148822546	-	TBFG_11355	-	acetyl-CoA acetyltransferase
1356	 65.57	0	1493960..1494874	+	304	148822547	-	TBFG_11356	-	thioredoxin
1357	 77.65	+2	1494952..1496763	-	603	148822548	-	TBFG_11357	-	PE-PGRS family protein
1358	 64.03	0	1496915..1499110	-	731	148822549	-	TBFG_11358	-	glycogen branching enzyme
1359	 64.43	0	1499118..1501223	-	701	148822550	-	TBFG_11359	-	glucanase glgE
1360	 65.82	0	1501362..1503953	+	863	148822551	-	TBFG_11360	-	glycogen phosphorylase glgP
1361	 67.32	0	1503993..1505987	-	664	148822552	-	TBFG_11361	-	ATP-dependent helicase dinG
1362	 68.82	0	1506011..1507357	-	448	148822553	-	TBFG_11362	-	nicotinate phosphoribosyltransferase
1363	 61.44	-1	1507459..1507764	+	101	148822554	clpS	TBFG_11363	-	ATP-dependent Clp protease adaptor protein ClpS
1364	 63.32	0	1507724..1508380	+	218	148822555	-	TBFG_11364	-	transcriptional regulator
1365	 69.95	+1	1508397..1509431	+	344	148822556	-	TBFG_11365	-	hydrolase
1366	 68.42	0	1509494..1510063	+	189	148822557	-	TBFG_11366	-	cysteine synthase B cysM
1367	 62.93	0	1510054..1510776	+	240	148822558	-	TBFG_11367	-	hypothetical protein
1368	 66.05	0	1510773..1511588	+	271	148822559	-	TBFG_11368	-	glutamate racemase
1369	 64.11	0	1511615..1512436	+	273	148822560	-	TBFG_11369	-	hypothetical protein
1370	 65.26	0	1512453..1513232	+	259	148822561	rph	TBFG_11370	-	ribonuclease PH
1371	 68.62	0	1513271..1513885	+	204	148822562	-	TBFG_11371	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1372	 62.81	0	1513882..1514244	-	120	148822563	-	TBFG_11372	-	hypothetical protein
1373	 62.99	0	1514241..1514621	-	126	148822564	-	TBFG_11373	-	lipoprotein lprD
1374	 59.81	-1	1514666..1514986	+	106	148822565	-	TBFG_11374	-	acyl carrier protein
1375	 67.24	0	1514979..1516544	+	521	148822566	-	TBFG_11375	-	acyl-CoA synthetase
1376	 64.94	0	1516544..1517704	+	386	148822567	-	TBFG_11376	-	acyl-CoA dehydrogenase fadE14
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.