IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1235	 65.35	0	1358007..1358234	+	75	148822426	-	TBFG_11235	-	hypothetical protein
1236	 64.69	0	1358262..1359425	-	387	148822427	-	TBFG_11236	-	glycosyl transferase
1237	 62.63	0	1359600..1360814	+	404	148822428	glgC	TBFG_11237	-	glucose-1-phosphate adenylyltransferase
1238	 65.47	0	1361058..1361390	-	110	148822429	-	TBFG_11238	-	PE family protein
1239	 68.45	0	1361524..1363209	-	561	148822430	-	TBFG_11239	-	hypothetical protein
1240	 59.85	-1	1363237..1363911	-	224	148822431	-	TBFG_11240	-	integral membrane protein
1241	 69.95	+1	1363920..1365566	-	548	148822432	-	TBFG_11241	-	tetronasin ABC transporter membrane protein
1242	 64.53	0	1365563..1366498	-	311	148822433	-	TBFG_11242	-	tetronasin ABC transporter ATP-binding protein
1243	 63.38	0	1366488..1367126	-	212	148822434	-	TBFG_11243	-	transcriptional regulator
1244	 70.97	+1	1367268..1368011	-	247	148822435	-	TBFG_11244	-	methyltransferase
1245	 62.92	0	1368178..1368951	+	257	148822436	-	TBFG_11245	-	RNA polymerase sigma factor SigE
1246	 66.84	0	1368992..1369573	+	193	148822437	-	TBFG_11246	-	hypothetical protein
1247	 64.97	0	1369641..1371227	+	528	148822438	-	TBFG_11247	-	serine protease htrA
1248	 64.65	0	1371229..1371624	+	131	148822439	-	TBFG_11248	-	sec-independent translocase
1249	 69.43	+1	1371657..1372487	-	276	148822440	-	TBFG_11249	-	hypothetical protein
1250	 70.70	+1	1372598..1374061	-	487	148822441	-	TBFG_11250	-	hypothetical protein
1251	 69.85	+1	1374058..1374591	-	177	148822442	-	TBFG_11251	-	hypothetical protein
1252	 65.95	0	1374686..1375243	+	185	148822443	-	TBFG_11252	-	lipoprotein lpqX
1253	 61.49	-1	1375295..1375468	+	57	148822444	-	TBFG_11253	-	hypothetical protein
1254	 67.43	0	1375543..1376715	-	390	148822445	-	TBFG_11254	-	hypothetical protein
1255	 69.66	+1	1376728..1377963	-	411	148822446	-	TBFG_11255	-	hypothetical protein
1256	 66.85	0	1378088..1378630	-	180	148822447	-	TBFG_11256	-	hypothetical protein
1257	 66.97	0	1378627..1379934	-	435	148822448	-	TBFG_11257	-	hypothetical protein
1258	 67.17	0	1379996..1380592	-	198	148822449	-	TBFG_11258	-	hypothetical protein
1259	 62.88	0	1380742..1381269	+	175	148822450	-	TBFG_11259	-	hypothetical protein
1260	 66.10	0	1381290..1382696	+	468	148822451	-	TBFG_11260	-	lipoprotein (sugar-binding) lpqY
1261	 62.55	0	1382693..1383616	+	307	148822452	-	TBFG_11261	-	sugar-transport integral membrane protein ABC transporter sugA
1262	 61.09	-1	1383621..1384445	+	274	148822453	-	TBFG_11262	-	sugar-transport integral membrane protein ABC transporter sugB
1263	 60.24	-1	1384450..1385631	+	393	148822454	-	TBFG_11263	-	sugar-transport ATP-binding protein ABC transporter sugC
1264	 62.22	0	1385708..1386808	-	366	148822455	-	TBFG_11264	-	magnesium and cobalt transport transmembrane protein corA
1265	 67.27	0	1386979..1387968	+	329	148822456	-	TBFG_11265	-	malate dehydrogenase
1266	 65.13	0	1388044..1388304	+	86	148822457	-	TBFG_11266	-	hypothetical protein
1267	 63.66	0	1388301..1388732	+	143	148822458	-	TBFG_11267	-	hypothetical protein
1268	 78.74	+2	1388755..1389309	-	184	148822459	-	TBFG_11268	-	PE-PGRS family protein
1269	 72.13	+1	1389272..1390516	-	414	148822460	-	TBFG_11269	-	PE-PGRS family protein
1270	 70.15	+1	1390624..1391484	+	286	148822461	-	TBFG_11270	-	lipoprotein lpqZ
1271	 64.98	0	1391565..1392395	-	276	148822462	-	TBFG_11271	-	short-chain type dehydrogenase/reductase
1272	 61.90	-1	1392452..1392745	-	97	148822463	-	TBFG_11272	-	hypothetical protein
1273	 63.33	0	1392742..1393011	-	89	148822464	-	TBFG_11273	-	hypothetical protein
1274	 64.31	0	1393124..1396819	-	1231	148822465	kgd	TBFG_11274	-	alpha-ketoglutarate decarboxylase
1275	 67.05	0	1396961..1397749	-	262	148822466	-	TBFG_11275	-	hypothetical protein
1276	 64.94	0	1397946..1399685	+	579	148822467	-	TBFG_11276	-	drug-transport integral membrane protein
1277	 67.40	0	1399588..1403007	-	1139	148822468	-	TBFG_11277	-	hypothetical protein
1278	 66.67	0	1403063..1403671	-	202	148822469	-	TBFG_11278	-	lipoprotein lprE
1279	 64.18	0	1403737..1405428	+	563	148822470	-	TBFG_11279	-	cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
1280	 63.80	0	1405425..1406576	+	383	148822471	-	TBFG_11280	-	acyltransferase
1281	 67.00	0	1406545..1407153	-	202	148822472	-	TBFG_11281	-	transcriptional regulator
1282	 67.32	0	1407153..1408370	-	405	148822473	-	TBFG_11282	-	cytochrome P450 130 cyp130
1283	 67.84	0	1408484..1409851	-	455	148822474	-	TBFG_11283	-	oxidoreductase
1284	 67.14	0	1409848..1411107	-	419	148822476	-	TBFG_11284	-	integral membrane transport protein
1285	 68.44	0	1411106..1412005	+	299	148822475	-	TBFG_11285	-	hypothetical protein
1286	 61.04	-1	1412007..1413125	+	372	148822477	-	TBFG_11286	-	hypothetical protein
1287	 63.56	0	1413251..1413700	-	149	148822478	-	TBFG_11287	-	hypothetical protein
1288	 67.13	0	1413705..1414139	-	144	148822479	-	TBFG_11288	-	HIT family protein
1289	 68.03	0	1414198..1415586	+	462	148822480	-	TBFG_11289	-	amidase
1290	 68.43	0	1415661..1416854	+	397	148822481	-	TBFG_11290	-	adenylyl cyclase (ATP pyrophosphate-lyase)
1291	 63.58	0	1417027..1417707	+	226	148822482	-	TBFG_11291	-	hypothetical protein
1292	 66.83	0	1417727..1419607	-	626	148822483	-	TBFG_11292	-	transmembrane serine/threonine-protein kinase H pknH
1293	 65.04	0	1419948..1421114	-	388	148822484	-	TBFG_11293	-	transcriptional regulatory protein embR
1294	 66.52	0	1421425..1422123	-	232	148822485	-	TBFG_11294	-	hypothetical protein
1295	 66.67	0	1422346..1422720	-	124	148822486	-	TBFG_11295	-	hypothetical protein
1296	 62.45	0	1422781..1423515	-	244	148822487	-	TBFG_11296	-	lipoprotein lprA
1297	 62.87	0	1423728..1424069	-	113	148822488	-	TBFG_11297	-	hypothetical protein
1298	 65.03	0	1424177..1426072	-	631	148822489	-	TBFG_11298	-	drug ABC transporter ATP-binding protein
1299	 64.32	0	1426069..1427817	-	582	148822490	-	TBFG_11299	-	drug ABC transporter ATP-binding protein
1300	 62.54	0	1427964..1428521	+	185	148822491	-	TBFG_11300	-	lipoprotein lprB
1301	 65.56	0	1428518..1429060	+	180	148822492	-	TBFG_11301	-	lipoprotein lprC
1302	 69.23	+1	1429205..1429711	-	168	148822493	-	TBFG_11302	-	hypothetical protein
1303	 66.59	0	1429931..1431184	+	417	148822494	-	TBFG_11303	-	hypothetical protein
1304	 68.87	+1	1431181..1433808	+	875	148822495	-	TBFG_11304	-	hypothetical protein
1305	 65.28	0	1433829..1435415	+	528	148822496	-	TBFG_11305	-	dehydrogenase FAD flavoprotein GMC oxidoreductase
1306	 65.15	0	1435432..1437207	-	591	148822497	-	TBFG_11306	-	periplasmic oligopeptide-binding lipoprotein oppA
1307	 66.23	0	1437200..1439038	-	612	148822498	-	TBFG_11307	-	oligopeptide-transport ATP-binding protein ABC transporter oppD
1308	 61.64	-1	1439035..1439910	-	291	148822499	-	TBFG_11308	-	oligopeptide-transport integral membrane protein ABC transporter oppC
1309	 64.83	0	1439907..1440884	-	325	148822500	-	TBFG_11309	-	oligopeptide-transport integral membrane protein ABC transporter oppB
1310	 63.82	0	1441091..1441582	+	163	148822501	-	TBFG_11310	-	hypothetical protein
1311	 64.46	0	1441676..1442674	+	332	148822502	-	TBFG_11311	-	sulfate adenylyltransferase subunit 2
1312	 63.25	0	1442674..1444518	+	614	148822503	-	TBFG_11312	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
1313	 67.90	0	1444572..1445057	+	161	148822504	-	TBFG_11313	-	hypothetical protein
1314	 64.99	0	1445115..1446485	+	456	148822505	-	TBFG_11314	-	hypothetical protein
1315	 60.03	-1	1446534..1447166	+	210	148822506	-	TBFG_11315	-	hypothetical protein
1316	 65.26	0	1447249..1448814	-	521	148822507	-	TBFG_11316	-	hypothetical protein
1317	 64.13	0	1448825..1449139	+	104	148822508	-	TBFG_11317	-	hypothetical protein
1318	 68.75	0	1449266..1449601	-	111	148822509	-	TBFG_11318	-	hypothetical protein
1319	 65.28	0	1450146..1451798	+	550	148822510	argS	TBFG_11319	-	arginyl-tRNA synthetase
1320	 63.99	0	1451795..1453138	+	447	148822511	-	TBFG_11320	-	diaminopimelate decarboxylase lysA (dap decarboxylase)
1321	 65.38	0	1453142..1454467	+	441	148822512	-	TBFG_11321	-	homoserine dehydrogenase
1322	 65.65	0	1454464..1455546	+	360	148822513	-	TBFG_11322	-	threonine synthase
1323	 63.72	0	1455764..1456714	+	316	148822514	-	TBFG_11323	-	homoserine kinase
1324	 65.51	0	1456971..1458779	+	602	148822515	-	TBFG_11324	-	transcription termination factor Rho
1325	 57.61	-2	1458930..1459172	+	80	148822516	rpmE	TBFG_11325	-	50S ribosomal protein L31
1326	 64.15	0	1459262..1460335	+	357	148822517	prfA	TBFG_11326	-	peptide chain release factor 1
1327	 65.64	0	1460332..1461309	+	325	148822518	-	TBFG_11327	-	hypothetical protein
1328	 66.82	0	1461325..1461978	+	217	148822519	-	TBFG_11328	-	hypothetical protein
1329	 65.10	0	1462062..1463276	+	404	148822520	-	TBFG_11329	-	undecapaprenyl-phosphate alpha-N-acetylglucosaminyltransferase rfe
1330	 61.11	-1	1463533..1464018	+	161	148822521	-	TBFG_11330	-	hypothetical protein
1331	 58.03	-2	1464011..1464763	+	250	148822522	-	TBFG_11331	-	F0F1 ATP synthase subunit A
1332	 60.76	-1	1464770..1465057	+	95	148822523	-	TBFG_11332	-	F0F1 ATP synthase subunit C
1333	 61.63	-1	1465088..1465603	+	171	148822524	-	TBFG_11333	-	F0F1 ATP synthase subunit B
1334	 64.28	0	1465610..1466950	+	446	148822525	-	TBFG_11334	-	F0F1 ATP synthase subunit delta
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.