IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.47 STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1196	 65.76	0	1305071..1305511	+	146	148822387	-	TBFG_11196	-	hypothetical protein
1197	 64.94	0	1305519..1306445	-	308	148822388	-	TBFG_11197	-	PE family protein
1198	 66.63	0	1306695..1309265	+	856	148822389	fbiC	TBFG_11198	-	FO synthase
1199	 63.96	0	1309433..1309765	-	110	148822390	-	TBFG_11199	-	putative antigen
1200	 65.23	0	1309966..1311990	-	674	148822391	-	TBFG_11200	-	NADPH dependent 2,4-dienoyl-CoA reductase fadH
1201	 64.39	0	1311987..1312556	-	189	148822392	-	TBFG_11201	-	hypothetical protein
1202	 60.37	-1	1312715..1313095	+	126	148822393	-	TBFG_11202	-	ferredoxin fdxC
1203	 68.69	0	1313128..1314216	+	362	148822394	-	TBFG_11203	-	N-succinyldiaminopimelate aminotransferase
1204	 68.55	0	1314244..1317063	-	939	148822395	-	TBFG_11204	-	hypothetical protein
1205	 65.81	0	1317442..1323747	+	2101	148822396	-	TBFG_11205	-	polyketide beta-ketoacyl synthase pks4
1206	 60.25	-1	1323800..1325218	+	472	148822397	-	TBFG_11206	-	polyketide synthase associated protein papA3
1207	 61.38	-1	1325285..1328293	+	1002	148822398	-	TBFG_11207	-	transmembrane transport protein mmpL10
1208	 63.43	0	1328297..1329376	-	359	148822399	-	TBFG_11208	-	hypothetical protein
1209	 59.93	-1	1329541..1331277	-	578	148822400	-	TBFG_11209	-	acyl-CoA synthetase
1210	 68.46	0	1331454..1333070	-	538	148822401	-	TBFG_11210	-	hypothetical protein
1211	 66.79	0	1333155..1334786	+	543	148822402	-	TBFG_11211	-	pyrroline-5-carboxylate dehydrogenase rocA
1212	 69.29	+1	1334786..1335775	+	329	148822403	-	TBFG_11212	-	proline dehydrogenase
1213	 65.52	0	1335857..1336729	+	290	148822404	sigI	TBFG_11213	-	RNA polymerase sigma factor SigI
1214	 67.46	0	1336745..1337623	+	292	148822405	-	TBFG_11214	-	hypothetical protein
1215	 67.98	0	1337696..1338610	+	304	148822406	-	TBFG_11215	-	hypothetical protein
1216	 67.75	0	1338692..1339519	+	275	148822407	-	TBFG_11216	-	hypothetical protein
1217	 68.35	0	1339559..1340980	+	473	148822408	-	TBFG_11217	-	acyl-CoA synthetase
1218	 64.61	0	1341013..1342278	-	421	148822409	-	TBFG_11218	-	hypothetical protein
1219	 66.06	0	1342738..1343067	+	109	148822410	-	TBFG_11219	-	PE family protein
1220	 69.05	+1	1343114..1344289	+	391	148822411	-	TBFG_11220	-	PPE family protein
1221	 62.96	0	1344423..1344719	+	98	148822412	-	TBFG_11221	-	Esat-6 like protein esxK (Esat-6 like protein 3)
1222	 63.16	0	1344770..1345054	+	94	148822413	-	TBFG_11222	-	Esat-6 like protein esxL (Esat-6 like protein 4)
1223	 66.35	0	1345122..1346369	-	415	148822414	-	TBFG_11223	-	transposase
1224	 64.08	0	1346706..1347983	+	425	148822415	-	TBFG_11224	-	integral membrane transport protein
1225	 67.19	0	1347980..1348933	-	317	148822416	-	TBFG_11225	-	transferase
1226	 66.67	0	1349024..1350088	+	354	148822417	-	TBFG_11226	-	dipeptidase
1227	 69.06	+1	1350085..1350669	-	194	148822418	-	TBFG_11227	-	hypothetical protein
1228	 70.52	+1	1350700..1352388	-	562	148822419	-	TBFG_11228	-	hypothetical protein
1229	 62.23	0	1352483..1353046	+	187	148822420	-	TBFG_11229	-	hypothetical protein
1230	 65.44	0	1353096..1354889	+	597	148822421	-	TBFG_11230	-	acyl-CoA synthetase
1231	 68.03	0	1354955..1355911	+	318	148822422	-	TBFG_11231	-	dihydropteroate synthase 2 folP2
1232	 66.36	0	1355908..1356882	+	324	148822423	-	TBFG_11232	-	hypothetical protein
1233	 69.11	+1	1356921..1357289	+	122	148822424	-	TBFG_11233	-	hypothetical protein
1234	 64.55	0	1357286..1357900	+	204	148822425	-	TBFG_11234	-	DNA-3-methyladenine glycosylase I tagA
1235	 65.35	0	1358007..1358234	+	75	148822426	-	TBFG_11235	-	hypothetical protein
1236	 64.69	0	1358262..1359425	-	387	148822427	-	TBFG_11236	-	glycosyl transferase
1237	 62.63	0	1359600..1360814	+	404	148822428	glgC	TBFG_11237	-	glucose-1-phosphate adenylyltransferase
1238	 65.47	0	1361058..1361390	-	110	148822429	-	TBFG_11238	-	PE family protein
1239	 68.45	0	1361524..1363209	-	561	148822430	-	TBFG_11239	-	hypothetical protein
1240	 59.85	-1	1363237..1363911	-	224	148822431	-	TBFG_11240	-	integral membrane protein
1241	 69.95	+1	1363920..1365566	-	548	148822432	-	TBFG_11241	-	tetronasin ABC transporter membrane protein
1242	 64.53	0	1365563..1366498	-	311	148822433	-	TBFG_11242	-	tetronasin ABC transporter ATP-binding protein
1243	 63.38	0	1366488..1367126	-	212	148822434	-	TBFG_11243	-	transcriptional regulator
1244	 70.97	+1	1367268..1368011	-	247	148822435	-	TBFG_11244	-	methyltransferase
1245	 62.92	0	1368178..1368951	+	257	148822436	-	TBFG_11245	-	RNA polymerase sigma factor SigE
1246	 66.84	0	1368992..1369573	+	193	148822437	-	TBFG_11246	-	hypothetical protein
1247	 64.97	0	1369641..1371227	+	528	148822438	-	TBFG_11247	-	serine protease htrA
1248	 64.65	0	1371229..1371624	+	131	148822439	-	TBFG_11248	-	sec-independent translocase
1249	 69.43	+1	1371657..1372487	-	276	148822440	-	TBFG_11249	-	hypothetical protein
1250	 70.70	+1	1372598..1374061	-	487	148822441	-	TBFG_11250	-	hypothetical protein
1251	 69.85	+1	1374058..1374591	-	177	148822442	-	TBFG_11251	-	hypothetical protein
1252	 65.95	0	1374686..1375243	+	185	148822443	-	TBFG_11252	-	lipoprotein lpqX
1253	 61.49	-1	1375295..1375468	+	57	148822444	-	TBFG_11253	-	hypothetical protein
1254	 67.43	0	1375543..1376715	-	390	148822445	-	TBFG_11254	-	hypothetical protein
1255	 69.66	+1	1376728..1377963	-	411	148822446	-	TBFG_11255	-	hypothetical protein
1256	 66.85	0	1378088..1378630	-	180	148822447	-	TBFG_11256	-	hypothetical protein
1257	 66.97	0	1378627..1379934	-	435	148822448	-	TBFG_11257	-	hypothetical protein
1258	 67.17	0	1379996..1380592	-	198	148822449	-	TBFG_11258	-	hypothetical protein
1259	 62.88	0	1380742..1381269	+	175	148822450	-	TBFG_11259	-	hypothetical protein
1260	 66.10	0	1381290..1382696	+	468	148822451	-	TBFG_11260	-	lipoprotein (sugar-binding) lpqY
1261	 62.55	0	1382693..1383616	+	307	148822452	-	TBFG_11261	-	sugar-transport integral membrane protein ABC transporter sugA
1262	 61.09	-1	1383621..1384445	+	274	148822453	-	TBFG_11262	-	sugar-transport integral membrane protein ABC transporter sugB
1263	 60.24	-1	1384450..1385631	+	393	148822454	-	TBFG_11263	-	sugar-transport ATP-binding protein ABC transporter sugC
1264	 62.22	0	1385708..1386808	-	366	148822455	-	TBFG_11264	-	magnesium and cobalt transport transmembrane protein corA
1265	 67.27	0	1386979..1387968	+	329	148822456	-	TBFG_11265	-	malate dehydrogenase
1266	 65.13	0	1388044..1388304	+	86	148822457	-	TBFG_11266	-	hypothetical protein
1267	 63.66	0	1388301..1388732	+	143	148822458	-	TBFG_11267	-	hypothetical protein
1268	 78.74	+2	1388755..1389309	-	184	148822459	-	TBFG_11268	-	PE-PGRS family protein
1269	 72.13	+1	1389272..1390516	-	414	148822460	-	TBFG_11269	-	PE-PGRS family protein
1270	 70.15	+1	1390624..1391484	+	286	148822461	-	TBFG_11270	-	lipoprotein lpqZ
1271	 64.98	0	1391565..1392395	-	276	148822462	-	TBFG_11271	-	short-chain type dehydrogenase/reductase
1272	 61.90	-1	1392452..1392745	-	97	148822463	-	TBFG_11272	-	hypothetical protein
1273	 63.33	0	1392742..1393011	-	89	148822464	-	TBFG_11273	-	hypothetical protein
1274	 64.31	0	1393124..1396819	-	1231	148822465	kgd	TBFG_11274	-	alpha-ketoglutarate decarboxylase
1275	 67.05	0	1396961..1397749	-	262	148822466	-	TBFG_11275	-	hypothetical protein
1276	 64.94	0	1397946..1399685	+	579	148822467	-	TBFG_11276	-	drug-transport integral membrane protein
1277	 67.40	0	1399588..1403007	-	1139	148822468	-	TBFG_11277	-	hypothetical protein
1278	 66.67	0	1403063..1403671	-	202	148822469	-	TBFG_11278	-	lipoprotein lprE
1279	 64.18	0	1403737..1405428	+	563	148822470	-	TBFG_11279	-	cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
1280	 63.80	0	1405425..1406576	+	383	148822471	-	TBFG_11280	-	acyltransferase
1281	 67.00	0	1406545..1407153	-	202	148822472	-	TBFG_11281	-	transcriptional regulator
1282	 67.32	0	1407153..1408370	-	405	148822473	-	TBFG_11282	-	cytochrome P450 130 cyp130
1283	 67.84	0	1408484..1409851	-	455	148822474	-	TBFG_11283	-	oxidoreductase
1284	 67.14	0	1409848..1411107	-	419	148822476	-	TBFG_11284	-	integral membrane transport protein
1285	 68.44	0	1411106..1412005	+	299	148822475	-	TBFG_11285	-	hypothetical protein
1286	 61.04	-1	1412007..1413125	+	372	148822477	-	TBFG_11286	-	hypothetical protein
1287	 63.56	0	1413251..1413700	-	149	148822478	-	TBFG_11287	-	hypothetical protein
1288	 67.13	0	1413705..1414139	-	144	148822479	-	TBFG_11288	-	HIT family protein
1289	 68.03	0	1414198..1415586	+	462	148822480	-	TBFG_11289	-	amidase
1290	 68.43	0	1415661..1416854	+	397	148822481	-	TBFG_11290	-	adenylyl cyclase (ATP pyrophosphate-lyase)
1291	 63.58	0	1417027..1417707	+	226	148822482	-	TBFG_11291	-	hypothetical protein
1292	 66.83	0	1417727..1419607	-	626	148822483	-	TBFG_11292	-	transmembrane serine/threonine-protein kinase H pknH
1293	 65.04	0	1419948..1421114	-	388	148822484	-	TBFG_11293	-	transcriptional regulatory protein embR
1294	 66.52	0	1421425..1422123	-	232	148822485	-	TBFG_11294	-	hypothetical protein
1295	 66.67	0	1422346..1422720	-	124	148822486	-	TBFG_11295	-	hypothetical protein
65.47	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.