IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
983	 65.00	0	1080601..1081020	-	139	148822174	-	TBFG_10983	-	hypothetical protein
984	 65.22	0	1081056..1081748	-	230	148822175	-	TBFG_10984	-	hypothetical protein
985	 62.78	0	1081798..1082157	+	119	148822176	-	TBFG_10985	-	hypothetical protein
986	 67.34	0	1082214..1082510	+	98	148822177	-	TBFG_10986	-	hypothetical protein
987	 68.81	0	1082500..1084878	+	792	148822178	-	TBFG_10987	-	metal cation transporter P-type ATPase ctpV
988	 62.09	0	1084875..1085507	+	210	148822179	-	TBFG_10988	-	integral membrane protein
989	 71.48	+1	1085598..1086407	-	269	148822180	-	TBFG_10989	-	enoyl-CoA hydratase
990	 64.44	0	1086407..1087573	-	388	148822181	-	TBFG_10990	-	acyl-CoA dehydrogenase fadE12
991	 67.81	0	1087570..1089573	-	667	148822182	-	TBFG_10991	-	acetyl-/propionyl-coenzyme A carboxylase subunit alpha
992	 66.10	0	1089579..1091168	-	529	148822183	-	TBFG_10992	-	acetyl-/propionyl-CoA carboxylase beta subunit accD2
993	 67.80	0	1091171..1092319	-	382	148822184	-	TBFG_10993	-	acyl-CoA dehydrogenase fadE13
994	 69.99	+1	1092316..1093998	-	560	148822185	-	TBFG_10994	-	hypothetical protein
995	 72.58	+2	1094196..1096967	+	923	148822186	-	TBFG_10995	-	PE-PGRS family protein
996	 71.02	+1	1097184..1098125	-	313	148822187	-	TBFG_10996	-	PE-PGRS family protein
997	 65.90	0	1098304..1098828	+	174	148822188	rpmF	TBFG_10997	-	50S ribosomal protein L32
998	 71.11	+1	1098847..1100220	-	457	148822189	-	TBFG_10998	-	PE-PGRS family protein
999	 65.51	0	1100585..1101277	+	230	148822190	-	TBFG_10999	-	two component response transcriptional regulatory protein MprA
1000	 65.08	0	1101277..1102791	+	504	148822191	-	TBFG_11000	-	two component system sensor kinase mprB
1001	 66.74	0	1102835..1104229	+	464	148822192	-	TBFG_11001	-	serine protease pepD
1002	 66.30	0	1104229..1104774	+	181	148822193	-	TBFG_11002	-	pterin-4-alpha-carbinolamine dehydratase moaB2
1003	 60.09	-1	1104794..1105249	-	151	148822194	mscL	TBFG_11003	-	large-conductance mechanosensitive channel
1004	 53.64	-2	1105604..1106317	+	237	148822195	-	TBFG_11004	-	adhesion ABC transporter ATP-binding protein
1005	 54.05	-2	1106310..1108877	+	855	148822196	-	TBFG_11005	-	adhesion ABC transporter transmembrane protein
1006	 53.40	-2	1108884..1110044	+	386	148822197	-	TBFG_11006	-	hypothetical protein
1007	 64.72	0	1110173..1111150	-	325	148822198	-	TBFG_11007	-	polyprenyl-diphosphate synthase grcC2
1008	 68.49	0	1111211..1111867	-	218	148822199	-	TBFG_11008	-	hypothetical protein
1009	 62.76	0	1111940..1112272	-	110	148822200	-	TBFG_11009	-	serine rich protein
1010	 71.38	+1	1112346..1112939	-	197	148822201	-	TBFG_11010	-	hypothetical protein
1011	 66.23	0	1113040..1113960	+	306	148822202	-	TBFG_11011	-	UTP-glucose-1-phosphate uridylyltransferase galU
1012	 68.15	0	1114037..1115317	+	426	148822203	-	TBFG_11012	-	molybdopterin biosynthesis protein moeA1
1013	 67.74	0	1115338..1115991	+	217	148822204	-	TBFG_11013	-	ribosomal protein alanine acetyltransferase rimJ
1014	 66.84	0	1116053..1117228	+	391	148822205	-	TBFG_11014	-	transmembrane protein
1015	 59.13	-1	1117629..1117880	+	83	148822206	-	TBFG_11015	-	hypothetical protein
1016	 65.28	0	1118061..1118492	+	143	148822207	-	TBFG_11016	-	hypothetical protein
1017	 65.47	0	1118516..1119517	+	333	148822208	-	TBFG_11017	-	hypothetical protein
1018	 66.27	0	1119535..1120293	+	252	148822209	-	TBFG_11018	-	hypothetical protein
1019	 66.50	0	1120299..1120916	-	205	148822210	-	TBFG_11019	-	hypothetical protein
1020	 65.76	0	1120953..1122161	+	402	148822211	-	TBFG_11020	-	arginine deiminase
1021	 66.48	0	1122196..1123764	-	522	148822212	-	TBFG_11021	-	hypothetical protein
1022	 69.23	+1	1123790..1124647	+	285	148822213	-	TBFG_11022	-	hypothetical protein
1023	 74.44	+2	1124657..1125955	-	432	148822214	-	TBFG_11023	-	hypothetical protein
1024	 68.99	+1	1125990..1127366	-	458	148822215	-	TBFG_11024	-	para-aminobenzoate synthase component I
1025	 65.02	0	1127482..1129185	+	567	148822216	-	TBFG_11025	-	hypothetical protein
1026	 64.10	0	1129212..1130771	-	519	148822217	-	TBFG_11026	-	methionyl-tRNA synthetase
1027	 68.18	0	1130857..1131651	+	264	148822218	-	TBFG_11027	-	deoxyribonuclease tatD (yjjV protein)
1028	 68.23	0	1131859..1132947	+	362	148822219	-	TBFG_11028	-	resuscitation-promoting factor rpfB
1029	 66.98	0	1132920..1133873	+	317	148822220	ksgA	TBFG_11029	-	dimethyladenosine transferase
1030	 68.51	0	1133959..1134879	+	306	148822221	-	TBFG_11030	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1031	 66.24	0	1135393..1137027	+	544	148822222	-	TBFG_11031	-	acyl-CoA synthetase
1032	 66.84	0	1137101..1137676	-	191	148822223	-	TBFG_11032	-	peptidyl-tRNA hydrolase
1033	 66.51	0	1137689..1138336	-	215	148822224	-	TBFG_11033	-	50S ribosomal protein L25/general stress protein Ctc
1034	 61.82	-1	1138553..1139233	-	226	148822225	-	TBFG_11034	-	lipoprotein lpqT
1035	 64.02	0	1139269..1140249	-	326	148822226	-	TBFG_11035	-	ribose-phosphate pyrophosphokinase
1036	 67.47	0	1140341..1141828	-	495	148822227	-	TBFG_11036	-	UDP-N-acetylglucosamine pyrophosphorylase glmU
1037	 64.98	0	1142083..1142676	+	197	148822228	-	TBFG_11037	-	TetR family transcriptional regulator
1038	 68.80	0	1142735..1146439	+	1234	148822229	-	TBFG_11038	-	transcription-repair coupling factor mfd
1039	 62.17	0	1146439..1147416	+	325	148822230	-	TBFG_11039	-	nucleoside triphosphate pyrophosphohydrolase
1040	 67.49	0	1147504..1148235	+	243	148822231	-	TBFG_11040	-	lipoprotein lpqU
1041	 66.74	0	1148332..1149621	+	429	148822232	eno	TBFG_11041	-	phosphopyruvate hydratase
1042	 68.85	0	1149626..1150312	+	228	148822233	-	TBFG_11042	-	hypothetical protein
1043	 68.29	0	1150305..1150796	+	163	148822234	-	TBFG_11043	-	hypothetical protein
1044	 68.96	+1	1150787..1151746	+	319	148822235	-	TBFG_11044	-	hypothetical protein
1045	 63.29	0	1152195..1152875	-	226	148822236	-	TBFG_11045	-	transcriptional regulatory protein kdpE
1046	 67.17	0	1152872..1155454	-	860	148822237	-	TBFG_11046	-	two component system sensor histidine kinase kdpD
1047	 63.46	0	1155780..1157495	+	571	148822238	-	TBFG_11047	-	potassium-transporting ATPase subunit A
1048	 65.63	0	1157492..1159621	+	709	148822239	-	TBFG_11048	-	potassium-transporting ATPase subunit B
1049	 66.32	0	1159621..1160190	+	189	148822240	-	TBFG_11049	-	potassium-transporting ATPase C subunit kdpC
1050	 65.03	0	1160194..1161723	-	509	148822241	-	TBFG_11050	-	two component system sensor histidine kinase trcS
1051	 62.02	-1	1161731..1162504	-	257	148822242	-	TBFG_11051	-	two component system transcriptional regulator trcR
1052	 66.67	0	1162686..1163177	-	163	148822243	-	TBFG_11052	-	transposase
1053	 70.89	+1	1163143..1163829	-	228	148822244	-	TBFG_11053	-	transposase
1054	 61.42	-1	1163863..1164186	-	107	148822245	-	TBFG_11054	-	transposase
1055	 63.16	0	1164312..1164596	-	94	148822246	-	TBFG_11055	-	Esat-6 like protein esxI (Esat-6 like protein 1)
1056	 63.30	0	1164623..1164919	-	98	148822247	-	TBFG_11056	-	Esat-6 like protein esxJ (Esat-6 like protein 2)
1057	 68.96	+1	1165065..1166240	-	391	148822248	-	TBFG_11057	-	PPE family protein
1058	 69.08	+1	1166317..1167144	-	275	148822249	-	TBFG_11058	-	PE family protein
1059	 64.84	0	1168340..1168777	-	145	148822250	-	TBFG_11059	-	transposase
1060	 64.46	0	1168860..1169267	-	135	148822251	-	TBFG_11060	-	transposase
1061	 64.33	0	1169550..1170575	-	341	148822252	-	TBFG_11061	-	hypothetical protein
1062	 64.74	0	1170822..1171445	+	207	148822253	-	TBFG_11062	-	hypothetical protein
1063	 62.36	0	1171442..1172323	+	293	148822254	-	TBFG_11063	-	hypothetical protein
1064	 62.48	0	1172405..1173193	-	262	148822256	-	TBFG_11064	-	hypothetical protein
1065	 66.51	0	1173193..1174440	+	415	148822255	-	TBFG_11065	-	transposase
1066	 61.92	-1	1174808..1175923	-	371	148822257	-	TBFG_11066	-	hypothetical protein
1067	 69.35	+1	1176156..1176602	+	148	148822258	-	TBFG_11067	-	transcriptional repressor
1068	 67.44	0	1176651..1177556	+	301	148822259	-	TBFG_11068	-	oxidoreductase
1069	 65.87	0	1177715..1178470	-	251	148822260	-	TBFG_11069	-	hypothetical protein
1070	 66.51	0	1178765..1179391	-	208	148822261	-	TBFG_11070	-	hypothetical protein
1071	 60.51	-1	1179493..1179882	+	129	148822262	-	TBFG_11071	-	hypothetical protein
1072	 58.33	-2	1179781..1180056	-	91	148822263	-	TBFG_11072	-	hypothetical protein
1073	 65.83	0	1180656..1181012	+	118	148822264	-	TBFG_11073	-	integrase
1074	 64.58	0	1181398..1182162	+	254	148822265	-	TBFG_11074	-	hypothetical protein
1075	 66.99	0	1183115..1184347	+	410	148822266	-	TBFG_11075	-	hypothetical protein
1076	 63.24	0	1184454..1186085	+	543	148822267	-	TBFG_11076	-	acyl-CoA synthetase
1077	 64.88	0	1186161..1187225	+	354	148822268	-	TBFG_11077	-	hypothetical protein
1078	 65.40	0	1187278..1187751	+	157	148822269	-	TBFG_11078	-	hypothetical protein
1079	 63.54	0	1187785..1188648	+	287	148822270	-	TBFG_11079	-	hypothetical protein
1080	 67.91	0	1188626..1189510	+	294	148822271	-	TBFG_11080	-	hypothetical protein
1081	 68.79	0	1189511..1190593	-	360	148822272	-	TBFG_11081	-	hypothetical protein
1082	 69.76	+1	1190674..1191093	-	139	148822273	-	TBFG_11082	-	lipoprotein lpqV
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.