IslandPathversion 1.0

IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.43 STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
925	 69.42	+1	1008000..1009487	-	495	148660682	accD3	MRA_0911	-	acetyl-CoA carboxylase carboxyl transferase subunit beta
926	 64.75	0	1009514..1010245	+	243	148660683	echA6	MRA_0912	-	enoyl-CoA hydratase
927	 68.45	0	1010251..1011369	+	372	148660684	-	MRA_0913	-	hypothetical protein
928	 63.65	0	1011354..1013042	+	562	148660685	-	MRA_0914	-	penicillin-binding protein 4
929	 63.53	0	1013039..1015432	+	797	148660686	ctpE	MRA_0915	-	metal cation transporting P-type ATPase CtpE
930	 56.67	-2	1015989..1016168	+	59	148660687	-	MRA_0916	-	hypothetical protein
931	 62.07	0	1016174..1016608	+	144	148660688	-	MRA_0917	-	hypothetical protein
932	 63.44	0	1016706..1017479	+	257	148660689	-	MRA_0918	-	hypothetical protein
933	 67.56	0	1017544..1017993	+	149	148660690	-	MRA_0919	-	putative transmembrane protein
934	 60.90	-1	1018525..1020033	-	502	148660691	-	MRA_0920	-	putative dioxygenase
935	 67.23	0	1020035..1021273	-	412	148660692	-	MRA_0921	-	acetyl-CoA acetyltransferase
936	 69.50	+1	1021366..1022637	-	423	148660693	-	MRA_0922	-	PPE family protein
937	 66.33	0	1022652..1022951	-	99	148660694	-	MRA_0923	-	PE family protein
938	 61.56	-1	1023395..1025176	+	593	148660695	betP	MRA_0924	-	putative glycine betaine transport integral membrane protein BetP
939	 67.83	0	1025173..1025430	+	85	148660696	-	MRA_0925	-	hypothetical protein
940	 66.46	0	1025519..1025995	+	158	148660697	-	MRA_0926	-	hypothetical protein
941	 63.47	0	1025992..1026492	+	166	148660698	-	MRA_0927	-	hypothetical protein
942	 63.48	0	1026805..1028124	-	439	148660699	-	MRA_0928	-	IS2606-like transposase
943	 67.35	0	1028412..1028993	+	193	148660700	-	MRA_0929	-	IS1535 resolvase
944	 67.27	0	1028993..1030645	+	550	148660701	-	MRA_0930	-	IS1535 transposase
945	 68.92	+1	1030821..1031885	-	354	148660702	-	MRA_0931	-	hypothetical protein
946	 65.35	0	1031886..1033172	-	428	148660703	mntH	MRA_0932	-	manganese transport protein MntH
947	 63.14	0	1033204..1033941	-	245	148660704	-	MRA_0933	-	hypothetical protein
948	 64.53	0	1034018..1035094	-	358	148660705	-	MRA_0934	-	hypothetical protein
949	 67.55	0	1035148..1035939	-	263	148660706	-	MRA_0935	-	short chain dehydrogenase
950	 62.44	0	1036211..1037323	+	370	148660707	pstS3	MRA_0936	-	phosphate ABC transporter substrate-binding protein PstS3
951	 63.28	0	1037336..1038310	+	324	148660708	pstC2	MRA_0937	-	phosphate ABC transporter permease protein PstC2
952	 63.28	0	1038307..1039221	+	304	148660709	pstA1	MRA_0938	-	phosphate ABC transporter permease protein PstA1
953	 65.21	0	1039228..1041222	-	664	148660710	pknD	MRA_0939	-	serine/threonine protein kinase
954	 61.37	-1	1041244..1042356	-	370	148660711	pstS2	MRA_0940	-	phosphate ABC transporter substrate-binding protein PstS2
955	 63.06	0	1042572..1043402	+	276	148660712	pstB	MRA_0941	-	phosphate ABC transportert ATP-binding protein PstB
956	 64.44	0	1043423..1044547	+	374	148660713	pstS1	MRA_0942	-	phosphate ABC transporter substrate-binding protein PstS1
957	 65.39	0	1044607..1045623	+	338	148660714	pstC1	MRA_0943	-	phosphate ABC transporter permease protein PstC1
958	 63.02	0	1045625..1046530	+	301	148660715	pstA2	MRA_0944	-	phosphate ABC transporter permease protein PstA2
959	 61.92	-1	1046507..1047328	-	273	148660716	-	MRA_0945	-	hypothetical protein
960	 65.57	0	1047444..1049723	+	759	148660717	-	MRA_0946	-	ATP-dependent DNA ligase
961	 67.18	0	1049720..1051654	+	644	148660718	-	MRA_0947	-	fumarylacetoacetate hydrolase family/metallo-beta-lactamase superfamily protein
962	 62.75	0	1051901..1052767	-	288	148660719	-	MRA_0948	-	FMNH2-dependent monooxygenase-related protein
963	 64.99	0	1052852..1053625	-	257	148660720	-	MRA_0949	-	hypothetical protein
964	 60.57	-1	1053668..1053946	+	92	148660721	-	MRA_0949A	-	hypothetical protein
965	 67.82	0	1054004..1055044	-	346	148660722	-	MRA_0950	-	hypothetical protein
966	 66.46	0	1055073..1055549	+	158	148660723	-	MRA_0951	-	formamidopyrimidine-DNA-glycosylase
967	 65.62	0	1055555..1056316	+	253	148660724	-	MRA_0952	-	short chain dehydrogenase
968	 64.32	0	1056332..1057993	-	553	148660725	pgi	MRA_0953	-	glucose-6-phosphate isomerase
969	 58.79	-1	1058608..1058937	-	109	148660726	-	MRA_0954	-	hypothetical protein
970	 61.01	-1	1058954..1059271	-	105	148660727	-	MRA_0955	-	hypothetical protein
971	 65.20	0	1059568..1061883	+	771	148660728	uvrD1	MRA_0956	-	putative ATP dependent DNA helicase UvrD1
972	 66.47	0	1061964..1062962	-	332	148660729	-	MRA_0957	-	hypothetical protein
973	 63.57	0	1063272..1064435	+	387	148660730	sucC	MRA_0958	-	succinyl-CoA synthetase subunit beta
974	 62.72	0	1064448..1065359	+	303	148660731	sucD	MRA_0959	-	succinyl-CoA synthetase subunit alpha
975	 66.43	0	1065422..1066270	-	282	148660732	-	MRA_0960	-	putative oxidoreductase
976	 66.89	0	1066435..1067346	+	303	148660733	-	MRA_0961	-	putative transmembrane protein
977	 67.69	0	1067386..1068753	+	455	148660734	-	MRA_0962	-	putative integral membrane protein
978	 65.12	0	1068869..1069516	+	215	148660735	purN	MRA_0963	-	phosphoribosylglycinamide formyltransferase
979	 66.73	0	1069513..1071084	+	523	148660736	purH	MRA_0964	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
980	 69.35	+1	1071191..1072570	+	459	148660737	-	MRA_0965	-	putative magnesium chelatase
981	 69.09	+1	1072563..1074581	+	672	148660738	-	MRA_0966	-	hypothetical protein
982	 64.41	0	1074635..1074856	+	73	148660739	-	MRA_0967	-	hypothetical protein
983	 66.15	0	1074853..1075236	+	127	148660740	-	MRA_0968	-	hypothetical protein
984	 58.77	-1	1075388..1075729	+	113	148660741	-	MRA_0969	-	putative integral membrane protein
985	 64.15	0	1075748..1076422	-	224	148660742	lprP	MRA_0970	-	putative lipoprotein LprP
986	 63.17	0	1076605..1077405	-	266	148660743	-	MRA_0971	-	hypothetical protein
987	 67.08	0	1077504..1077986	-	160	148660744	-	MRA_0971A	-	hypothetical protein
988	 65.00	0	1078086..1078505	-	139	148660745	-	MRA_0972	-	hypothetical protein
989	 67.00	0	1078541..1079143	-	200	148660746	-	MRA_0973	-	hypothetical protein
990	 62.78	0	1079283..1079642	+	119	148660747	-	MRA_0974	-	hypothetical protein
991	 67.34	0	1079699..1079995	+	98	148660748	-	MRA_0975	-	hypothetical protein
992	 69.09	+1	1080051..1082363	+	770	148660749	ctpV	MRA_0976	-	metal cation transporting P-type ATPase CtpV
993	 61.93	-1	1082360..1082992	+	210	148660750	-	MRA_0977	-	putative integral membrane protein
994	 71.48	+1	1083083..1083892	-	269	148660751	echA7	MRA_0978	-	enoyl-CoA hydratase
995	 64.44	0	1083892..1085058	-	388	148660752	fadE12	MRA_0979	-	acyl-CoA dehydrogenase FadE12
996	 67.81	0	1085055..1087058	-	667	148660753	accA2	MRA_0980	-	acetyl-/propionyl-coenzyme A carboxylase subunit alpha
997	 66.10	0	1087064..1088653	-	529	148660754	accD2	MRA_0981	-	propionyl-CoA carboxylase subunit beta AccD2
998	 67.80	0	1088656..1089804	-	382	148660755	fadE13	MRA_0982	-	acyl-CoA dehydrogenase FadE13
999	 70.05	+1	1089801..1091483	-	560	148660756	-	MRA_0983	-	hypothetical protein
1000	 72.51	+2	1091681..1094452	+	923	148660757	-	MRA_0984	-	PE-PGRS family protein
1001	 70.98	+1	1094669..1095664	-	331	148660758	-	MRA_0985	-	PE-PGRS family protein
1002	 67.18	0	1095978..1096172	-	64	148660759	-	MRA_0985A	-	hypothetical protein
1003	 66.09	0	1096194..1096367	+	57	148660760	rpmF	MRA_0986	-	50S ribosomal protein L32
1004	 71.25	+1	1096386..1097759	-	457	148660761	-	MRA_0987	-	PE-PGRS family protein
1005	 65.51	0	1098124..1098816	+	230	148660762	mprA	MRA_0988	-	two component response transcriptional regulatory protein MprA
1006	 65.08	0	1098816..1100330	+	504	148660763	mprB	MRA_0989	-	putative two component sensor kinase MprB
1007	 66.67	0	1100374..1101768	+	464	148660764	pepD	MRA_0990	-	serine protease PepD
1008	 66.30	0	1101768..1102313	+	181	148660765	moaB2	MRA_0991	-	pterin-4-alpha-carbinolamine dehydratase MoaB2
1009	 60.09	-1	1102333..1102788	-	151	148660766	mscL	MRA_0992	-	large-conductance mechanosensitive channel
1010	 53.41	-2	1103111..1103857	+	248	148660767	-	MRA_0993	-	adhesion component ABC transporter ATP-binding protein
1011	 54.09	-2	1103850..1106417	+	855	148660768	-	MRA_0994	-	adhesion component ABC transporter permease protein
1012	 53.40	-2	1106424..1107584	+	386	148660769	-	MRA_0995	-	hypothetical protein
1013	 64.62	0	1107713..1108690	-	325	148660770	grcC2	MRA_0996	-	polyprenyl-diphosphate synthase GrcC2
1014	 68.65	0	1108751..1109407	-	218	148660771	-	MRA_0997	-	hypothetical protein
1015	 62.76	0	1109480..1109812	-	110	148660772	-	MRA_0998	-	putative serine rich protein
1016	 71.38	+1	1109886..1110479	-	197	148660773	-	MRA_0999	-	hypothetical protein
1017	 66.12	0	1110580..1111500	+	306	148660774	galU	MRA_1000	-	UTP--glucose-1-phosphate uridylyltransferase
1018	 68.15	0	1111577..1112857	+	426	148660775	moeA1	MRA_1001	-	molybdopterin biosynthesis protein MoeA1
1019	 67.97	0	1112920..1113531	+	203	148660776	rimJ	MRA_1002	-	ribosomal-protein-alanine acetyltransferase RimJ
1020	 67.32	0	1113692..1114768	+	358	148660777	-	MRA_1003	-	putative transmembrane protein
1021	 59.13	-1	1115169..1115420	+	83	148660778	-	MRA_1004	-	hypothetical protein
1022	 65.28	0	1115601..1116032	+	143	148660779	-	MRA_1006	-	hypothetical protein
1023	 65.47	0	1116056..1117057	+	333	148660780	-	MRA_1007	-	hypothetical protein
1024	 66.27	0	1117075..1117833	+	252	148660781	-	MRA_1008	-	hypothetical protein
65.43	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.