IslandPath Analysis: Mycobacterium tuberculosis H37Ra



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.43   STD DEV: 3.37
Mycobacterium tuberculosis H37Ra, complete genome - 1..4419977
4034 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
889	 69.71	+1	967571..968653	-	360	148660646	moaA	MRA_0876	-	molybdenum cofactor biosynthesis protein A
890	 61.79	-1	968650..969039	-	129	148660647	-	MRA_0877	-	hypothetical protein
891	 67.40	0	969204..969611	+	135	148660648	cspB	MRA_0878	-	cold-shock domain-contain protein
892	 75.07	+2	969730..971550	-	606	148660649	-	MRA_0879	-	PE-PGRS family protein
893	 63.03	0	971811..973763	+	650	148660650	fadE10	MRA_0880	-	acyl-CoA dehydrogenase FadE10
894	 70.46	+1	973852..975012	-	386	148660651	-	MRA_0881	-	hypothetical protein
895	 64.83	0	975112..975600	-	162	148660652	-	MRA_0882	-	hypothetical protein
896	 65.88	0	975597..977243	-	548	148660653	-	MRA_0883	-	hypothetical protein
897	 67.55	0	977381..978169	+	262	148660654	-	MRA_0884	-	hypothetical protein
898	 64.14	0	978164..979510	-	448	148660655	-	MRA_0885	-	PPE family protein
899	 67.75	0	979788..980063	-	91	148660656	-	MRA_0886	-	putative transmembrane protein
900	 66.44	0	980241..980672	+	143	148660657	-	MRA_0887	-	MarR family transcriptional regulator
901	 66.32	0	980669..981535	+	288	148660658	-	MRA_0888	-	putative rRNA methyltransferase
902	 70.18	+1	981532..981816	+	94	148660659	-	MRA_0889	-	putative transmembrane protein
903	 68.64	0	981813..982574	-	253	148660660	-	MRA_0890	-	hypothetical protein
904	 65.78	0	982731..983861	-	376	148660661	serC	MRA_0891	-	phosphoserine aminotransferase
905	 63.44	0	984069..985091	+	340	148660662	-	MRA_0892	-	hypothetical protein
906	 67.77	0	985110..986837	+	575	148660663	fprB	MRA_0893	-	putative ferredoxin/ferredoxin--NADP reductase
907	 64.05	0	986820..987278	-	152	148660664	-	MRA_0894	-	hypothetical protein
908	 59.26	-1	988041..988229	-	62	148660665	-	MRA_0895	-	hypothetical protein
909	 63.20	0	988540..990012	+	490	148660666	-	MRA_0896	-	hypothetical protein
910	 68.63	0	990047..991168	-	373	148660667	citA	MRA_0897	-	citrate synthase 2
911	 64.74	0	991255..993903	-	882	148660668	-	MRA_0898	-	LuxR family transcriptional regulator
912	 60.02	-1	993905..994762	-	285	148660669	-	MRA_0899	-	putative transcriptional regulatory protein
913	 58.74	-1	995160..996647	+	495	148660670	-	MRA_0900	-	putative monooxygenase
914	 60.63	-1	996625..997602	-	325	148660671	-	MRA_0901	-	hypothetical protein
915	 60.74	-1	997831..999012	+	393	148660672	-	MRA_0902	-	MarR family transcriptional regulator
916	 67.26	0	999089..1000606	+	505	148660673	-	MRA_0903	-	hypothetical protein
917	 62.42	0	1000779..1002074	+	431	148660674	gltA	MRA_0904	-	type II citrate synthase
918	 68.28	0	1002115..1003722	-	535	148660675	-	MRA_0905	-	putative oxidoreductase
919	 66.29	0	1003748..1004011	-	87	148660676	-	MRA_0905A	-	hypothetical protein
920	 60.75	-1	1004119..1005099	+	326	148660677	ompA	MRA_0906	-	outer membrane protein A
921	 63.40	0	1005112..1005264	+	50	148660678	-	MRA_0907	-	hypothetical protein
922	 67.42	0	1005264..1005791	+	175	148660679	-	MRA_0908	-	hypothetical protein
923	 68.53	0	1005808..1007148	-	446	148660680	prrB	MRA_0909	-	two component sensor histidine kinase PrrB
924	 66.81	0	1007159..1007869	-	236	148660681	prrA	MRA_0910	-	two component response transcriptional regulatory protein PrrA
925	 69.42	+1	1008000..1009487	-	495	148660682	accD3	MRA_0911	-	acetyl-CoA carboxylase carboxyl transferase subunit beta
926	 64.75	0	1009514..1010245	+	243	148660683	echA6	MRA_0912	-	enoyl-CoA hydratase
927	 68.45	0	1010251..1011369	+	372	148660684	-	MRA_0913	-	hypothetical protein
928	 63.65	0	1011354..1013042	+	562	148660685	-	MRA_0914	-	penicillin-binding protein 4
929	 63.53	0	1013039..1015432	+	797	148660686	ctpE	MRA_0915	-	metal cation transporting P-type ATPase CtpE
930	 56.67	-2	1015989..1016168	+	59	148660687	-	MRA_0916	-	hypothetical protein
931	 62.07	0	1016174..1016608	+	144	148660688	-	MRA_0917	-	hypothetical protein
932	 63.44	0	1016706..1017479	+	257	148660689	-	MRA_0918	-	hypothetical protein
933	 67.56	0	1017544..1017993	+	149	148660690	-	MRA_0919	-	putative transmembrane protein
934	 60.90	-1	1018525..1020033	-	502	148660691	-	MRA_0920	-	putative dioxygenase
935	 67.23	0	1020035..1021273	-	412	148660692	-	MRA_0921	-	acetyl-CoA acetyltransferase
936	 69.50	+1	1021366..1022637	-	423	148660693	-	MRA_0922	-	PPE family protein
937	 66.33	0	1022652..1022951	-	99	148660694	-	MRA_0923	-	PE family protein
938	 61.56	-1	1023395..1025176	+	593	148660695	betP	MRA_0924	-	putative glycine betaine transport integral membrane protein BetP
939	 67.83	0	1025173..1025430	+	85	148660696	-	MRA_0925	-	hypothetical protein
940	 66.46	0	1025519..1025995	+	158	148660697	-	MRA_0926	-	hypothetical protein
941	 63.47	0	1025992..1026492	+	166	148660698	-	MRA_0927	-	hypothetical protein
942	 63.48	0	1026805..1028124	-	439	148660699	-	MRA_0928	-	IS2606-like transposase
943	 67.35	0	1028412..1028993	+	193	148660700	-	MRA_0929	-	IS1535 resolvase
944	 67.27	0	1028993..1030645	+	550	148660701	-	MRA_0930	-	IS1535 transposase
945	 68.92	+1	1030821..1031885	-	354	148660702	-	MRA_0931	-	hypothetical protein
946	 65.35	0	1031886..1033172	-	428	148660703	mntH	MRA_0932	-	manganese transport protein MntH
947	 63.14	0	1033204..1033941	-	245	148660704	-	MRA_0933	-	hypothetical protein
948	 64.53	0	1034018..1035094	-	358	148660705	-	MRA_0934	-	hypothetical protein
949	 67.55	0	1035148..1035939	-	263	148660706	-	MRA_0935	-	short chain dehydrogenase
950	 62.44	0	1036211..1037323	+	370	148660707	pstS3	MRA_0936	-	phosphate ABC transporter substrate-binding protein PstS3
951	 63.28	0	1037336..1038310	+	324	148660708	pstC2	MRA_0937	-	phosphate ABC transporter permease protein PstC2
952	 63.28	0	1038307..1039221	+	304	148660709	pstA1	MRA_0938	-	phosphate ABC transporter permease protein PstA1
953	 65.21	0	1039228..1041222	-	664	148660710	pknD	MRA_0939	-	serine/threonine protein kinase
954	 61.37	-1	1041244..1042356	-	370	148660711	pstS2	MRA_0940	-	phosphate ABC transporter substrate-binding protein PstS2
955	 63.06	0	1042572..1043402	+	276	148660712	pstB	MRA_0941	-	phosphate ABC transportert ATP-binding protein PstB
956	 64.44	0	1043423..1044547	+	374	148660713	pstS1	MRA_0942	-	phosphate ABC transporter substrate-binding protein PstS1
957	 65.39	0	1044607..1045623	+	338	148660714	pstC1	MRA_0943	-	phosphate ABC transporter permease protein PstC1
958	 63.02	0	1045625..1046530	+	301	148660715	pstA2	MRA_0944	-	phosphate ABC transporter permease protein PstA2
959	 61.92	-1	1046507..1047328	-	273	148660716	-	MRA_0945	-	hypothetical protein
960	 65.57	0	1047444..1049723	+	759	148660717	-	MRA_0946	-	ATP-dependent DNA ligase
961	 67.18	0	1049720..1051654	+	644	148660718	-	MRA_0947	-	fumarylacetoacetate hydrolase family/metallo-beta-lactamase superfamily protein
962	 62.75	0	1051901..1052767	-	288	148660719	-	MRA_0948	-	FMNH2-dependent monooxygenase-related protein
963	 64.99	0	1052852..1053625	-	257	148660720	-	MRA_0949	-	hypothetical protein
964	 60.57	-1	1053668..1053946	+	92	148660721	-	MRA_0949A	-	hypothetical protein
965	 67.82	0	1054004..1055044	-	346	148660722	-	MRA_0950	-	hypothetical protein
966	 66.46	0	1055073..1055549	+	158	148660723	-	MRA_0951	-	formamidopyrimidine-DNA-glycosylase
967	 65.62	0	1055555..1056316	+	253	148660724	-	MRA_0952	-	short chain dehydrogenase
968	 64.32	0	1056332..1057993	-	553	148660725	pgi	MRA_0953	-	glucose-6-phosphate isomerase
969	 58.79	-1	1058608..1058937	-	109	148660726	-	MRA_0954	-	hypothetical protein
970	 61.01	-1	1058954..1059271	-	105	148660727	-	MRA_0955	-	hypothetical protein
971	 65.20	0	1059568..1061883	+	771	148660728	uvrD1	MRA_0956	-	putative ATP dependent DNA helicase UvrD1
972	 66.47	0	1061964..1062962	-	332	148660729	-	MRA_0957	-	hypothetical protein
973	 63.57	0	1063272..1064435	+	387	148660730	sucC	MRA_0958	-	succinyl-CoA synthetase subunit beta
974	 62.72	0	1064448..1065359	+	303	148660731	sucD	MRA_0959	-	succinyl-CoA synthetase subunit alpha
975	 66.43	0	1065422..1066270	-	282	148660732	-	MRA_0960	-	putative oxidoreductase
976	 66.89	0	1066435..1067346	+	303	148660733	-	MRA_0961	-	putative transmembrane protein
977	 67.69	0	1067386..1068753	+	455	148660734	-	MRA_0962	-	putative integral membrane protein
978	 65.12	0	1068869..1069516	+	215	148660735	purN	MRA_0963	-	phosphoribosylglycinamide formyltransferase
979	 66.73	0	1069513..1071084	+	523	148660736	purH	MRA_0964	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
980	 69.35	+1	1071191..1072570	+	459	148660737	-	MRA_0965	-	putative magnesium chelatase
981	 69.09	+1	1072563..1074581	+	672	148660738	-	MRA_0966	-	hypothetical protein
982	 64.41	0	1074635..1074856	+	73	148660739	-	MRA_0967	-	hypothetical protein
983	 66.15	0	1074853..1075236	+	127	148660740	-	MRA_0968	-	hypothetical protein
984	 58.77	-1	1075388..1075729	+	113	148660741	-	MRA_0969	-	putative integral membrane protein
985	 64.15	0	1075748..1076422	-	224	148660742	lprP	MRA_0970	-	putative lipoprotein LprP
986	 63.17	0	1076605..1077405	-	266	148660743	-	MRA_0971	-	hypothetical protein
987	 67.08	0	1077504..1077986	-	160	148660744	-	MRA_0971A	-	hypothetical protein
988	 65.00	0	1078086..1078505	-	139	148660745	-	MRA_0972	-	hypothetical protein
65.43	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.